RNA–Protein interactions for RNA: ENST00000479602.5

DDX56-211, Transcript of DEAD-box helicase 56, humanhuman

TSL 2

Gene DDX56, Length 440 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56-211ENST00000479602 ZNF335Q9H4Z2 1342 aaPredicted RBP13.88□□□□□ -0.19
DDX56-211ENST00000479602 CAMSAP2Q08AD1 1489 aa13.87□□□□□ -0.19
DDX56-211ENST00000479602 CLTCQ00610 1675 aaKnown RBP13.87□□□□□ -0.19
DDX56-211ENST00000479602 A2ML1A8K2U0 1454 aa13.87□□□□□ -0.19
DDX56-211ENST00000479602 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.86□□□□□ -0.19
DDX56-211ENST00000479602 TSPY4P0CV99 314 aa13.86□□□□□ -0.19
DDX56-211ENST00000479602 TSPY10P0CW01 314 aa13.86□□□□□ -0.19
DDX56-211ENST00000479602 FAM135AQ9P2D6 1515 aa13.85□□□□□ -0.19
DDX56-211ENST00000479602 ARHGEF5Q12774 1597 aa13.85□□□□□ -0.19
DDX56-211ENST00000479602 CEP170BQ9Y4F5 1589 aaPredicted RBP13.85□□□□□ -0.19
DDX56-211ENST00000479602 PZPP20742 1482 aa13.85□□□□□ -0.19
DDX56-211ENST00000479602 WASHC2CQ9Y4E1 1318 aa13.85□□□□□ -0.19
DDX56-211ENST00000479602 ZNF142P52746 1687 aaPredicted RBP13.85□□□□□ -0.19
DDX56-211ENST00000479602 TNRQ92752 1358 aa13.83□□□□□ -0.19
DDX56-211ENST00000479602 DNMT1P26358 1616 aaKnown RBP13.82□□□□□ -0.2
DDX56-211ENST00000479602 MYO3AQ8NEV4 1616 aa13.82□□□□□ -0.2
DDX56-211ENST00000479602 ILDR2Q71H61 639 aa13.82□□□□□ -0.2
DDX56-211ENST00000479602 FGD6Q6ZV73 1430 aa13.81□□□□□ -0.2
DDX56-211ENST00000479602 THEMISQ8N1K5 641 aaPredicted RBP13.8□□□□□ -0.2
DDX56-211ENST00000479602 RRBP1Q9P2E9 1410 aaKnown RBP13.8□□□□□ -0.2
DDX56-211ENST00000479602 KDM5DQ9BY66 1539 aa13.8□□□□□ -0.2
DDX56-211ENST00000479602 MED14O60244 1454 aa13.79□□□□□ -0.2
DDX56-211ENST00000479602 SHANK2Q9UPX8 1470 aa13.79□□□□□ -0.2
DDX56-211ENST00000479602 MAST1Q9Y2H9 1570 aa13.79□□□□□ -0.2
DDX56-211ENST00000479602 ANKLE2Q86XL3 938 aa13.78□□□□□ -0.2
DDX56-211ENST00000479602 NLRP1Q9C000 1473 aa13.78□□□□□ -0.2
DDX56-211ENST00000479602 PTPN23Q9H3S7 1636 aa13.77□□□□□ -0.21
DDX56-211ENST00000479602 NEURL4Q96JN8 1562 aa13.76□□□□□ -0.21
DDX56-211ENST00000479602 UBAP1LF5GYI3 381 aa13.76□□□□□ -0.21
DDX56-211ENST00000479602 DISP3Q9P2K9 1392 aa13.75□□□□□ -0.21
DDX56-211ENST00000479602 ABCC3O15438 1527 aa13.74□□□□□ -0.21
DDX56-211ENST00000479602 ABCC5O15440 1437 aa13.74□□□□□ -0.21
DDX56-211ENST00000479602 CROCC2H7BZ55 1655 aa13.74□□□□□ -0.21
DDX56-211ENST00000479602 RNF17Q9BXT8 1623 aaKnown RBP13.74□□□□□ -0.21
DDX56-211ENST00000479602 ARHGAP31Q2M1Z3 1444 aa13.73□□□□□ -0.21
DDX56-211ENST00000479602 MROH1Q8NDA8 1641 aa13.73□□□□□ -0.21
DDX56-211ENST00000479602 SPATA31D1Q6ZQQ2 1576 aa13.73□□□□□ -0.21
DDX56-211ENST00000479602 SOCS7O14512 581 aa13.72□□□□□ -0.21
DDX56-211ENST00000479602 VWDEQ8N2E2 1590 aa13.71□□□□□ -0.21
DDX56-211ENST00000479602 UGGT1Q9NYU2 1555 aa13.71□□□□□ -0.21
DDX56-211ENST00000479602 ERVK-7P63135 1459 aa13.71□□□□□ -0.21
DDX56-211ENST00000479602 NPHP4O75161 1426 aaPredicted RBP13.71□□□□□ -0.22
DDX56-211ENST00000479602 CPS1P31327 1500 aa13.7□□□□□ -0.22
DDX56-211ENST00000479602 ADGRL2O95490 1459 aa13.7□□□□□ -0.22
DDX56-211ENST00000479602 DUOX2Q9NRD8 1548 aa13.69□□□□□ -0.22
DDX56-211ENST00000479602 DEPDC5O75140 1603 aa13.69□□□□□ -0.22
DDX56-211ENST00000479602 LTKP29376 864 aa13.69□□□□□ -0.22
DDX56-211ENST00000479602 KIF15Q9NS87 1388 aa13.69□□□□□ -0.22
DDX56-211ENST00000479602 EIF2AK4Q9P2K8 1649 aaKnown RBP13.68□□□□□ -0.22
DDX56-211ENST00000479602 TOM1O60784 492 aa13.68□□□□□ -0.22
DDX56-211ENST00000479602 RRP7BPQ9NSQ0 103 aa13.68□□□□□ -0.22
DDX56-211ENST00000479602 ARHGAP23Q9P227 1491 aa13.67□□□□□ -0.22
DDX56-211ENST00000479602 ERBINQ96RT1 1412 aa13.67□□□□□ -0.22
DDX56-211ENST00000479602 HSPA1LP34931 641 aa13.67□□□□□ -0.22
DDX56-211ENST00000479602 ALKQ9UM73 1620 aa13.67□□□□□ -0.22
DDX56-211ENST00000479602 DAPK1P53355 1430 aa13.66□□□□□ -0.22
DDX56-211ENST00000479602 ROCK1Q13464 1354 aa13.65□□□□□ -0.22
DDX56-211ENST00000479602 ZC3H13Q5T200 1668 aaKnown RBP13.64□□□□□ -0.23
DDX56-211ENST00000479602 SLIT1O75093 1534 aa13.64□□□□□ -0.23
DDX56-211ENST00000479602 PRDM15P57071 1507 aaPredicted RBP13.64□□□□□ -0.23
DDX56-211ENST00000479602 IDI1Q13907 227 aa13.63□□□□□ -0.23
DDX56-211ENST00000479602 POLR1AO95602 1720 aaPredicted RBP13.63□□□□□ -0.23
DDX56-211ENST00000479602 LMTK2Q8IWU2 1503 aa13.63□□□□□ -0.23
DDX56-211ENST00000479602 LRRC7Q96NW7 1537 aa13.63□□□□□ -0.23
DDX56-211ENST00000479602 TXNDC2Q86VQ3 553 aa13.62□□□□□ -0.23
DDX56-211ENST00000479602 ANKRD30AQ9BXX3 1397 aa13.6□□□□□ -0.23
DDX56-211ENST00000479602 TMEM2Q9UHN6 1383 aa13.6□□□□□ -0.23
DDX56-211ENST00000479602 NOS1P29475 1434 aa13.6□□□□□ -0.23
DDX56-211ENST00000479602 PIP4K2BP78356 416 aa13.6□□□□□ -0.23
DDX56-211ENST00000479602 CHIC2Q9UKJ5 165 aa13.6□□□□□ -0.23
DDX56-211ENST00000479602 SCAF11Q99590 1463 aaKnown RBP13.6□□□□□ -0.23
DDX56-211ENST00000479602 UBR1Q8IWV7 1749 aa13.59□□□□□ -0.23
DDX56-211ENST00000479602 STRCP1A6NGW2 1772 aa13.58□□□□□ -0.23
DDX56-211ENST00000479602 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.58□□□□□ -0.24
DDX56-211ENST00000479602 IQGAP1P46940 1657 aa13.58□□□□□ -0.24
DDX56-211ENST00000479602 SLC52A1Q9NWF4 448 aa13.57□□□□□ -0.24
DDX56-211ENST00000479602 EID1Q9Y6B2 187 aa13.56□□□□□ -0.24
DDX56-211ENST00000479602 TET3O43151 1660 aa13.56□□□□□ -0.24
DDX56-211ENST00000479602 GCC2Q8IWJ2 1684 aa13.56□□□□□ -0.24
DDX56-211ENST00000479602 KANK1Q14678 1352 aa13.56□□□□□ -0.24
DDX56-211ENST00000479602 CEP152O94986 1710 aa13.56□□□□□ -0.24
DDX56-211ENST00000479602 CFAP65Q6ZU64 1925 aaKnown RBP13.55□□□□□ -0.24
DDX56-211ENST00000479602 KCNA6P17658 529 aa13.55□□□□□ -0.24
DDX56-211ENST00000479602 ACIN1Q9UKV3 1341 aaKnown RBP13.55□□□□□ -0.24
DDX56-211ENST00000479602 HFM1A2PYH4 1435 aa13.55□□□□□ -0.24
DDX56-211ENST00000479602 FAM135BQ49AJ0 1406 aa13.52□□□□□ -0.25
DDX56-211ENST00000479602 ANKRD50Q9ULJ7 1429 aa13.52□□□□□ -0.25
DDX56-211ENST00000479602 KDM5AP29375 1690 aaKnown RBP13.51□□□□□ -0.25
DDX56-211ENST00000479602 PIK3C2BO00750 1634 aa13.51□□□□□ -0.25
DDX56-211ENST00000479602 SYNMO15061 1565 aa13.51□□□□□ -0.25
DDX56-211ENST00000479602 SCAF1Q9H7N4 1312 aaKnown RBP13.51□□□□□ -0.25
DDX56-211ENST00000479602 EFCAB6Q5THR3 1501 aa13.5□□□□□ -0.25
DDX56-211ENST00000479602 RPRD2Q5VT52 1461 aaKnown RBP13.5□□□□□ -0.25
DDX56-211ENST00000479602 UNC13BO14795 1591 aa13.49□□□□□ -0.25
DDX56-211ENST00000479602 SLC26A8Q96RN1 970 aa13.49□□□□□ -0.25
DDX56-211ENST00000479602 RGS17Q9UGC6 210 aaPredicted RBP13.49□□□□□ -0.25
DDX56-211ENST00000479602 ZFYVE9O95405 1425 aa13.48□□□□□ -0.25
DDX56-211ENST00000479602 NAIPQ13075 1403 aa13.48□□□□□ -0.25
DDX56-211ENST00000479602 TMEM94Q12767 1356 aa13.48□□□□□ -0.25
DDX56-211ENST00000479602 FAM50AQ14320 339 aaKnown RBP13.48□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms