RNA–Protein interactions for RNA: ENST00000479161.5

C9orf3-217, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 5

Gene C9orf3, Length 942 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-217ENST00000479161 PPARGC1BQ86YN6 1023 aaKnown RBP23.69■■□□□ 1.38
C9orf3-217ENST00000479161 ROCK1Q13464 1354 aa23.68■■□□□ 1.38
C9orf3-217ENST00000479161 C3P01024 1663 aa23.67■■□□□ 1.38
C9orf3-217ENST00000479161 ZMYM3Q14202 1370 aa23.65■■□□□ 1.38
C9orf3-217ENST00000479161 RRP7BPQ9NSQ0 103 aa23.65■■□□□ 1.38
C9orf3-217ENST00000479161 CLTCQ00610 1675 aaKnown RBP23.64■■□□□ 1.38
C9orf3-217ENST00000479161 NPATQ14207 1427 aa23.64■■□□□ 1.37
C9orf3-217ENST00000479161 PTPRKQ15262 1439 aa23.64■■□□□ 1.37
C9orf3-217ENST00000479161 KDM5DQ9BY66 1539 aa23.64■■□□□ 1.37
C9orf3-217ENST00000479161 ILDR1Q86SU0 546 aaPredicted RBP23.63■■□□□ 1.37
C9orf3-217ENST00000479161 CHIC2Q9UKJ5 165 aa23.62■■□□□ 1.37
C9orf3-217ENST00000479161 ZC3H13Q5T200 1668 aaKnown RBP23.62■■□□□ 1.37
C9orf3-217ENST00000479161 DEPDC5O75140 1603 aa23.61■■□□□ 1.37
C9orf3-217ENST00000479161 MROH1Q8NDA8 1641 aa23.6■■□□□ 1.37
C9orf3-217ENST00000479161 PRDM15P57071 1507 aaPredicted RBP23.59■■□□□ 1.37
C9orf3-217ENST00000479161 CEBPAP49715 358 aaPredicted RBP23.59■■□□□ 1.37
C9orf3-217ENST00000479161 WASHC2CQ9Y4E1 1318 aa23.59■■□□□ 1.37
C9orf3-217ENST00000479161 PREX1Q8TCU6 1659 aa23.58■■□□□ 1.37
C9orf3-217ENST00000479161 LMTK3Q96Q04 1460 aa23.57■■□□□ 1.36
C9orf3-217ENST00000479161 ANKRD50Q9ULJ7 1429 aa23.57■■□□□ 1.36
C9orf3-217ENST00000479161 ABCC3O15438 1527 aa23.54■■□□□ 1.36
C9orf3-217ENST00000479161 PZPP20742 1482 aa23.54■■□□□ 1.36
C9orf3-217ENST00000479161 VWDEQ8N2E2 1590 aa23.52■■□□□ 1.36
C9orf3-217ENST00000479161 ARHGAP31Q2M1Z3 1444 aa23.51■■□□□ 1.35
C9orf3-217ENST00000479161 KANK1Q14678 1352 aa23.51■■□□□ 1.35
C9orf3-217ENST00000479161 UHRF1BP1Q6BDS2 1440 aa23.5■■□□□ 1.35
C9orf3-217ENST00000479161 LMTK2Q8IWU2 1503 aa23.5■■□□□ 1.35
C9orf3-217ENST00000479161 CEP152O94986 1710 aa23.46■■□□□ 1.35
C9orf3-217ENST00000479161 CAMSAP1Q5T5Y3 1602 aa23.46■■□□□ 1.35
C9orf3-217ENST00000479161 PLPPR3Q6T4P5 718 aa23.46■■□□□ 1.35
C9orf3-217ENST00000479161 ITGAEP38570 1179 aa23.45■■□□□ 1.34
C9orf3-217ENST00000479161 UNC13BO14795 1591 aa23.44■■□□□ 1.34
C9orf3-217ENST00000479161 ZNF142P52746 1687 aaPredicted RBP23.42■■□□□ 1.34
C9orf3-217ENST00000479161 SPATA31D1Q6ZQQ2 1576 aa23.42■■□□□ 1.34
C9orf3-217ENST00000479161 HFM1A2PYH4 1435 aa23.41■■□□□ 1.34
C9orf3-217ENST00000479161 NAIPQ13075 1403 aa23.41■■□□□ 1.34
C9orf3-217ENST00000479161 GCC2Q8IWJ2 1684 aa23.4■■□□□ 1.34
C9orf3-217ENST00000479161 MYO3AQ8NEV4 1616 aa23.4■■□□□ 1.34
C9orf3-217ENST00000479161 TNRQ92752 1358 aa23.4■■□□□ 1.34
C9orf3-217ENST00000479161 NLRP1Q9C000 1473 aa23.39■■□□□ 1.34
C9orf3-217ENST00000479161 GRWD1Q9BQ67 446 aaKnown RBP eCLIP23.39■■□□□ 1.332e-13■■□□□ 12.2
C9orf3-217ENST00000479161 RPRD2Q5VT52 1461 aaKnown RBP23.38■■□□□ 1.33
C9orf3-217ENST00000479161 FBXO31Q5XUX0 539 aaPredicted RBP23.38■■□□□ 1.33
C9orf3-217ENST00000479161 ERVK-7P63135 1459 aa23.37■■□□□ 1.33
C9orf3-217ENST00000479161 EFCAB6Q5THR3 1501 aa23.37■■□□□ 1.33
C9orf3-217ENST00000479161 A2ML1A8K2U0 1454 aa23.36■■□□□ 1.33
C9orf3-217ENST00000479161 CEP170BQ9Y4F5 1589 aaPredicted RBP23.36■■□□□ 1.33
C9orf3-217ENST00000479161 TET3O43151 1660 aa23.36■■□□□ 1.33
C9orf3-217ENST00000479161 IQGAP3Q86VI3 1631 aa23.36■■□□□ 1.33
C9orf3-217ENST00000479161 CFAP65Q6ZU64 1925 aaKnown RBP23.35■■□□□ 1.33
C9orf3-217ENST00000479161 ACIN1Q9UKV3 1341 aaKnown RBP23.33■■□□□ 1.33
C9orf3-217ENST00000479161 HSPA2P54652 639 aa23.33■■□□□ 1.33
C9orf3-217ENST00000479161 PLA2R1Q13018 1463 aa23.31■■□□□ 1.32
C9orf3-217ENST00000479161 NOS1P29475 1434 aa23.3■■□□□ 1.32
C9orf3-217ENST00000479161 STRCQ7RTU9 1775 aa23.29■■□□□ 1.32
C9orf3-217ENST00000479161 NUP155O75694 1391 aa23.29■■□□□ 1.32
C9orf3-217ENST00000479161 DMRT2Q9Y5R5 561 aa23.29■■□□□ 1.32
C9orf3-217ENST00000479161 KDM5AP29375 1690 aaKnown RBP23.26■■□□□ 1.31
C9orf3-217ENST00000479161 THEMISQ8N1K5 641 aaPredicted RBP23.26■■□□□ 1.31
C9orf3-217ENST00000479161 UGGT1Q9NYU2 1555 aa23.24■■□□□ 1.31
C9orf3-217ENST00000479161 PKD2Q13563 968 aa23.24■■□□□ 1.31
C9orf3-217ENST00000479161 SLC52A1Q9NWF4 448 aa23.24■■□□□ 1.31
C9orf3-217ENST00000479161 E9PCH4 1651 aa23.23■■□□□ 1.31
C9orf3-217ENST00000479161 PTPRTO14522 1441 aa23.23■■□□□ 1.31
C9orf3-217ENST00000479161 SYNMO15061 1565 aa23.21■■□□□ 1.31
C9orf3-217ENST00000479161 UBR1Q8IWV7 1749 aa23.19■■□□□ 1.3
C9orf3-217ENST00000479161 FBXO41Q8TF61 875 aa23.18■■□□□ 1.3
C9orf3-217ENST00000479161 SETD5Q9C0A6 1442 aa23.16■■□□□ 1.3
C9orf3-217ENST00000479161 PIK3C2BO00750 1634 aa23.16■■□□□ 1.3
C9orf3-217ENST00000479161 IDI1Q13907 227 aa23.16■■□□□ 1.3
C9orf3-217ENST00000479161 HRCP23327 699 aa23.15■■□□□ 1.3
C9orf3-217ENST00000479161 SLIT1O75093 1534 aa23.14■■□□□ 1.3
C9orf3-217ENST00000479161 POLR1AO95602 1720 aaPredicted RBP23.14■■□□□ 1.3
C9orf3-217ENST00000479161 ANKLE2Q86XL3 938 aa23.14■■□□□ 1.29
C9orf3-217ENST00000479161 MED14O60244 1454 aa23.13■■□□□ 1.29
C9orf3-217ENST00000479161 ARHGAP23Q9P227 1491 aa23.13■■□□□ 1.29
C9orf3-217ENST00000479161 SPHKAPQ2M3C7 1700 aa23.11■■□□□ 1.29
C9orf3-217ENST00000479161 TRIM52Q96A61 297 aa23.1■■□□□ 1.29
C9orf3-217ENST00000479161 ADGRB3O60242 1522 aa23.09■■□□□ 1.29
C9orf3-217ENST00000479161 NCKAP5LQ9HCH0 1330 aa23.08■■□□□ 1.29
C9orf3-217ENST00000479161 NEURL4Q96JN8 1562 aa23.07■■□□□ 1.28
C9orf3-217ENST00000479161 TMEM2Q9UHN6 1383 aa23.07■■□□□ 1.28
C9orf3-217ENST00000479161 SLC4A1APQ9BWU0 796 aaKnown RBP23.07■■□□□ 1.28
C9orf3-217ENST00000479161 STAG3Q9UJ98 1225 aa23.06■■□□□ 1.28
C9orf3-217ENST00000479161 TMEM131LA2VDJ0 1609 aa23.06■■□□□ 1.28
C9orf3-217ENST00000479161 RAB3GAP2Q9H2M9 1393 aa23.04■■□□□ 1.28
C9orf3-217ENST00000479161 TRPM2O94759 1503 aa23.04■■□□□ 1.28
C9orf3-217ENST00000479161 SCAF11Q99590 1463 aaKnown RBP23.04■■□□□ 1.28
C9orf3-217ENST00000479161 EID1Q9Y6B2 187 aa23.03■■□□□ 1.28
C9orf3-217ENST00000479161 MPHOSPH9Q99550 1183 aa23.02■■□□□ 1.28
C9orf3-217ENST00000479161 NPHP4O75161 1426 aaPredicted RBP23.01■■□□□ 1.27
C9orf3-217ENST00000479161 HDGFP51858 240 aaKnown RBP23.01■■□□□ 1.27
C9orf3-217ENST00000479161 TXNDC2Q86VQ3 553 aa23■■□□□ 1.27
C9orf3-217ENST00000479161 MYO5BQ9ULV0 1848 aa23■■□□□ 1.27
C9orf3-217ENST00000479161 IQGAP1P46940 1657 aa23■■□□□ 1.27
C9orf3-217ENST00000479161 LTKP29376 864 aa22.98■■□□□ 1.27
C9orf3-217ENST00000479161 ZFYVE9O95405 1425 aa22.98■■□□□ 1.27
C9orf3-217ENST00000479161 KIF1BO60333 1816 aa22.95■■□□□ 1.26
C9orf3-217ENST00000479161 CLTCL1P53675 1640 aa22.95■■□□□ 1.26
C9orf3-217ENST00000479161 LTBP4Q8N2S1 1624 aa22.95■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms