RNA–Protein interactions for RNA: ENST00000479080.1

CHD3-210, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 5

Gene CHD3, Length 519 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-210ENST00000479080 RNF17Q9BXT8 1623 aaKnown RBP19.6■□□□□ 0.73
CHD3-210ENST00000479080 AGLP35573 1532 aa19.6■□□□□ 0.73
CHD3-210ENST00000479080 KDM5DQ9BY66 1539 aa19.6■□□□□ 0.73
CHD3-210ENST00000479080 PZPP20742 1482 aa19.59■□□□□ 0.73
CHD3-210ENST00000479080 VWDEQ8N2E2 1590 aa19.57■□□□□ 0.72
CHD3-210ENST00000479080 PRDM15P57071 1507 aaPredicted RBP19.57■□□□□ 0.72
CHD3-210ENST00000479080 DHX57Q6P158 1386 aaKnown RBP19.57■□□□□ 0.72
CHD3-210ENST00000479080 KIF3BO15066 747 aa19.54■□□□□ 0.72
CHD3-210ENST00000479080 IQGAP3Q86VI3 1631 aa19.52■□□□□ 0.72
CHD3-210ENST00000479080 FAM135AQ9P2D6 1515 aa19.51■□□□□ 0.71
CHD3-210ENST00000479080 NUP155O75694 1391 aa19.5■□□□□ 0.71
CHD3-210ENST00000479080 TRIM52Q96A61 297 aa19.48■□□□□ 0.71
CHD3-210ENST00000479080 ABCC3O15438 1527 aa19.47■□□□□ 0.71
CHD3-210ENST00000479080 LMTK2Q8IWU2 1503 aa19.47■□□□□ 0.71
CHD3-210ENST00000479080 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.46■□□□□ 0.714e-6■□□□□ 11
CHD3-210ENST00000479080 CEP152O94986 1710 aa19.45■□□□□ 0.7
CHD3-210ENST00000479080 GGT6Q6P531 493 aa19.44■□□□□ 0.7
CHD3-210ENST00000479080 MPHOSPH9Q99550 1183 aa19.44■□□□□ 0.7
CHD3-210ENST00000479080 TET3O43151 1660 aa19.42■□□□□ 0.7
CHD3-210ENST00000479080 EFCAB6Q5THR3 1501 aa19.41■□□□□ 0.7
CHD3-210ENST00000479080 E9PCH4 1651 aa19.4■□□□□ 0.7
CHD3-210ENST00000479080 ZC3H13Q5T200 1668 aaKnown RBP19.4■□□□□ 0.7
CHD3-210ENST00000479080 MLECQ14165 292 aa19.39■□□□□ 0.69
CHD3-210ENST00000479080 FOXD1Q16676 465 aa19.39■□□□□ 0.69
CHD3-210ENST00000479080 SLC4A1APQ9BWU0 796 aaKnown RBP19.39■□□□□ 0.69
CHD3-210ENST00000479080 ACIN1Q9UKV3 1341 aaKnown RBP19.39■□□□□ 0.69
CHD3-210ENST00000479080 CAMSAP1Q5T5Y3 1602 aa19.39■□□□□ 0.69
CHD3-210ENST00000479080 KANK1Q14678 1352 aa19.38■□□□□ 0.69
CHD3-210ENST00000479080 PLA2R1Q13018 1463 aa19.37■□□□□ 0.69
CHD3-210ENST00000479080 ARID4BQ4LE39 1312 aaPredicted RBP19.37■□□□□ 0.69
CHD3-210ENST00000479080 PKD2Q13563 968 aa19.37■□□□□ 0.69
CHD3-210ENST00000479080 CLTCQ00610 1675 aaKnown RBP19.36■□□□□ 0.69
CHD3-210ENST00000479080 NPATQ14207 1427 aa19.36■□□□□ 0.69
CHD3-210ENST00000479080 ADAMTSL3P82987 1691 aa19.35■□□□□ 0.69
CHD3-210ENST00000479080 ANKRD30BQ9BXX2 1392 aa19.34■□□□□ 0.69
CHD3-210ENST00000479080 ARHGAP31Q2M1Z3 1444 aa19.34■□□□□ 0.69
CHD3-210ENST00000479080 WASHC2CQ9Y4E1 1318 aa19.33■□□□□ 0.69
CHD3-210ENST00000479080 MADDQ8WXG6 1647 aa19.33■□□□□ 0.68
CHD3-210ENST00000479080 CCER1Q8TC90 406 aaPredicted RBP19.32■□□□□ 0.68
CHD3-210ENST00000479080 PPP6R1Q9UPN7 881 aa19.32■□□□□ 0.68
CHD3-210ENST00000479080 PTPRTO14522 1441 aa19.31■□□□□ 0.68
CHD3-210ENST00000479080 FER1L4A9Z1Z3 1794 aa19.29■□□□□ 0.68
CHD3-210ENST00000479080 RPRD2Q5VT52 1461 aaKnown RBP19.29■□□□□ 0.68
CHD3-210ENST00000479080 MROH2AA6NES4 1674 aa19.29■□□□□ 0.68
CHD3-210ENST00000479080 NOS1P29475 1434 aa19.28■□□□□ 0.68
CHD3-210ENST00000479080 TRPM2O94759 1503 aa19.28■□□□□ 0.68
CHD3-210ENST00000479080 SYNMO15061 1565 aa19.27■□□□□ 0.68
CHD3-210ENST00000479080 SPHKAPQ2M3C7 1700 aa19.27■□□□□ 0.68
CHD3-210ENST00000479080 CNTLNQ9NXG0 1405 aa19.26■□□□□ 0.67
CHD3-210ENST00000479080 SIN3AQ96ST3 1273 aa19.26■□□□□ 0.67
CHD3-210ENST00000479080 ERVK-7P63135 1459 aa19.26■□□□□ 0.67
CHD3-210ENST00000479080 UGGT1Q9NYU2 1555 aa19.26■□□□□ 0.67
CHD3-210ENST00000479080 CLSPNQ9HAW4 1339 aa19.25■□□□□ 0.67
CHD3-210ENST00000479080 RIMS1Q86UR5 1692 aaKnown RBP19.25■□□□□ 0.67
CHD3-210ENST00000479080 PREX1Q8TCU6 1659 aa19.25■□□□□ 0.67
CHD3-210ENST00000479080 ZMYM3Q14202 1370 aa19.25■□□□□ 0.67
CHD3-210ENST00000479080 SPATA31D1Q6ZQQ2 1576 aa19.24■□□□□ 0.67
CHD3-210ENST00000479080 CLTCL1P53675 1640 aa19.24■□□□□ 0.67
CHD3-210ENST00000479080 C3P01024 1663 aa19.24■□□□□ 0.67
CHD3-210ENST00000479080 FBXO31Q5XUX0 539 aaPredicted RBP19.23■□□□□ 0.67
CHD3-210ENST00000479080 PIK3C2BO00750 1634 aa19.21■□□□□ 0.67
CHD3-210ENST00000479080 CEBPAP49715 358 aaPredicted RBP19.19■□□□□ 0.66
CHD3-210ENST00000479080 ILDR1Q86SU0 546 aaPredicted RBP19.18■□□□□ 0.66
CHD3-210ENST00000479080 KDM4FA0A1W2PPD8 638 aa19.16■□□□□ 0.66
CHD3-210ENST00000479080 CCDC144AA2RUR9 1427 aa19.16■□□□□ 0.66
CHD3-210ENST00000479080 ESF1Q9H501 851 aaKnown RBP19.15■□□□□ 0.66
CHD3-210ENST00000479080 SPATA31E1Q6ZUB1 1445 aa19.15■□□□□ 0.66
CHD3-210ENST00000479080 PTPRMP28827 1452 aa19.15■□□□□ 0.66
CHD3-210ENST00000479080 CFAP65Q6ZU64 1925 aaKnown RBP19.14■□□□□ 0.65
CHD3-210ENST00000479080 NEUROD1Q13562 356 aa19.13■□□□□ 0.65
CHD3-210ENST00000479080 ADGRB3O60242 1522 aa19.12■□□□□ 0.65
CHD3-210ENST00000479080 TNRQ92752 1358 aa19.12■□□□□ 0.65
CHD3-210ENST00000479080 IDI1Q13907 227 aa19.09■□□□□ 0.65
CHD3-210ENST00000479080 NEURL4Q96JN8 1562 aa19.09■□□□□ 0.65
CHD3-210ENST00000479080 TMEM131LA2VDJ0 1609 aa19.07■□□□□ 0.64
CHD3-210ENST00000479080 MYO3AQ8NEV4 1616 aa19.07■□□□□ 0.64
CHD3-210ENST00000479080 PLPPR3Q6T4P5 718 aa19.06■□□□□ 0.64
CHD3-210ENST00000479080 A2ML1A8K2U0 1454 aa19.04■□□□□ 0.64
CHD3-210ENST00000479080 L3MBTL2Q969R5 705 aa19.04■□□□□ 0.64
CHD3-210ENST00000479080 SLC52A1Q9NWF4 448 aa19.04■□□□□ 0.64
CHD3-210ENST00000479080 NLRP1Q9C000 1473 aa19.03■□□□□ 0.64
CHD3-210ENST00000479080 KIF1BO60333 1816 aa19.02■□□□□ 0.64
CHD3-210ENST00000479080 TONSLQ96HA7 1378 aa19.02■□□□□ 0.64
CHD3-210ENST00000479080 MYO5BQ9ULV0 1848 aa19.02■□□□□ 0.63
CHD3-210ENST00000479080 UBR1Q8IWV7 1749 aa19.01■□□□□ 0.63
CHD3-210ENST00000479080 IFT172Q9UG01 1749 aa19.01■□□□□ 0.63
CHD3-210ENST00000479080 NEXMIFQ5QGS0 1516 aa19■□□□□ 0.63
CHD3-210ENST00000479080 ZNF142P52746 1687 aaPredicted RBP19■□□□□ 0.63
CHD3-210ENST00000479080 CEP170BQ9Y4F5 1589 aaPredicted RBP18.99■□□□□ 0.63
CHD3-210ENST00000479080 RGL3Q3MIN7 710 aa18.99■□□□□ 0.63
CHD3-210ENST00000479080 KDM5AP29375 1690 aaKnown RBP18.98■□□□□ 0.63
CHD3-210ENST00000479080 TIMELESSQ9UNS1 1208 aa18.98■□□□□ 0.63
CHD3-210ENST00000479080 CHGAP10645 457 aaKnown RBP18.96■□□□□ 0.63
CHD3-210ENST00000479080 ZFYVE9O95405 1425 aa18.96■□□□□ 0.63
CHD3-210ENST00000479080 PPLO60437 1756 aa18.96■□□□□ 0.63
CHD3-210ENST00000479080 PPP1R15AO75807 674 aaPredicted RBP18.95■□□□□ 0.62
CHD3-210ENST00000479080 MYOM2P54296 1465 aa18.95■□□□□ 0.62
CHD3-210ENST00000479080 UHRF1BP1Q6BDS2 1440 aa18.94■□□□□ 0.62
CHD3-210ENST00000479080 NBPF8Q3BBV2 869 aa18.94■□□□□ 0.62
CHD3-210ENST00000479080 ARHGAP23Q9P227 1491 aa18.94■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms