RNA–Protein interactions for RNA: ENST00000477554.5

PTPN7-209, Transcript of protein tyrosine phosphatase, non-receptor type 7, humanhuman

APPRIS ALT2 TSL 2

Gene PTPN7, Length 1,432 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN7-209ENST00000477554 PTPRKQ15262 1439 aa27.33■■□□□ 1.97
PTPN7-209ENST00000477554 RNF17Q9BXT8 1623 aaKnown RBP27.33■■□□□ 1.97
PTPN7-209ENST00000477554 DUOX2Q9NRD8 1548 aa27.31■■□□□ 1.96
PTPN7-209ENST00000477554 SETD1BQ9UPS6 1966 aaKnown RBP27.3■■□□□ 1.96
PTPN7-209ENST00000477554 KDM5DQ9BY66 1539 aa27.3■■□□□ 1.96
PTPN7-209ENST00000477554 EIF2AK4Q9P2K8 1649 aaKnown RBP27.29■■□□□ 1.96
PTPN7-209ENST00000477554 UHRF1BP1Q6BDS2 1440 aa27.28■■□□□ 1.96
PTPN7-209ENST00000477554 FBXO31Q5XUX0 539 aaPredicted RBP27.27■■□□□ 1.96
PTPN7-209ENST00000477554 NCOA1Q15788 1441 aa27.26■■□□□ 1.95
PTPN7-209ENST00000477554 PPP6R1Q9UPN7 881 aa27.25■■□□□ 1.95
PTPN7-209ENST00000477554 WASHC2CQ9Y4E1 1318 aa27.25■■□□□ 1.95
PTPN7-209ENST00000477554 CEP152O94986 1710 aa27.25■■□□□ 1.95
PTPN7-209ENST00000477554 ABCC3O15438 1527 aa27.24■■□□□ 1.95
PTPN7-209ENST00000477554 NPATQ14207 1427 aa27.24■■□□□ 1.95
PTPN7-209ENST00000477554 STRCQ7RTU9 1775 aa27.24■■□□□ 1.95
PTPN7-209ENST00000477554 MYO3AQ8NEV4 1616 aa27.23■■□□□ 1.95
PTPN7-209ENST00000477554 ADGRL2O95490 1459 aa27.22■■□□□ 1.95
PTPN7-209ENST00000477554 ANKRD30AQ9BXX3 1397 aa27.21■■□□□ 1.95
PTPN7-209ENST00000477554 ERBINQ96RT1 1412 aa27.21■■□□□ 1.95
PTPN7-209ENST00000477554 PZPP20742 1482 aa27.19■■□□□ 1.94
PTPN7-209ENST00000477554 ITGAEP38570 1179 aa27.17■■□□□ 1.94
PTPN7-209ENST00000477554 PRDM15P57071 1507 aaPredicted RBP27.17■■□□□ 1.94
PTPN7-209ENST00000477554 DEPDC5O75140 1603 aa27.17■■□□□ 1.94
PTPN7-209ENST00000477554 FAM135AQ9P2D6 1515 aa27.16■■□□□ 1.94
PTPN7-209ENST00000477554 GRWD1Q9BQ67 446 aaKnown RBP eCLIP27.16■■□□□ 1.94
PTPN7-209ENST00000477554 ZC3H13Q5T200 1668 aaKnown RBP27.15■■□□□ 1.94
PTPN7-209ENST00000477554 CAMSAP1Q5T5Y3 1602 aa27.15■■□□□ 1.94
PTPN7-209ENST00000477554 ZNF142P52746 1687 aaPredicted RBP27.14■■□□□ 1.94
PTPN7-209ENST00000477554 CEP170BQ9Y4F5 1589 aaPredicted RBP27.14■■□□□ 1.94
PTPN7-209ENST00000477554 CFAP65Q6ZU64 1925 aaKnown RBP27.14■■□□□ 1.93
PTPN7-209ENST00000477554 TNRQ92752 1358 aa27.11■■□□□ 1.93
PTPN7-209ENST00000477554 RRBP1Q9P2E9 1410 aaKnown RBP27.09■■□□□ 1.93
PTPN7-209ENST00000477554 VWDEQ8N2E2 1590 aa27.07■■□□□ 1.92
PTPN7-209ENST00000477554 ANKRD50Q9ULJ7 1429 aa27.07■■□□□ 1.92
PTPN7-209ENST00000477554 A2ML1A8K2U0 1454 aa27.05■■□□□ 1.92
PTPN7-209ENST00000477554 ERVK-7P63135 1459 aa27.05■■□□□ 1.92
PTPN7-209ENST00000477554 SPATA31D1Q6ZQQ2 1576 aa27.05■■□□□ 1.92
PTPN7-209ENST00000477554 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP27.05■■□□□ 1.92
PTPN7-209ENST00000477554 NCKAP5LQ9HCH0 1330 aa27.04■■□□□ 1.92
PTPN7-209ENST00000477554 ROCK1Q13464 1354 aa27.01■■□□□ 1.92
PTPN7-209ENST00000477554 LMTK2Q8IWU2 1503 aa26.98■■□□□ 1.91
PTPN7-209ENST00000477554 ARHGAP31Q2M1Z3 1444 aa26.96■■□□□ 1.91
PTPN7-209ENST00000477554 UNC13BO14795 1591 aa26.96■■□□□ 1.91
PTPN7-209ENST00000477554 KANK1Q14678 1352 aa26.96■■□□□ 1.91
PTPN7-209ENST00000477554 EFCAB6Q5THR3 1501 aa26.95■■□□□ 1.9
PTPN7-209ENST00000477554 PLA2R1Q13018 1463 aa26.94■■□□□ 1.9
PTPN7-209ENST00000477554 NLRP1Q9C000 1473 aa26.94■■□□□ 1.9
PTPN7-209ENST00000477554 ILDR1Q86SU0 546 aaPredicted RBP26.93■■□□□ 1.9
PTPN7-209ENST00000477554 UGGT1Q9NYU2 1555 aa26.93■■□□□ 1.9
PTPN7-209ENST00000477554 PTPRTO14522 1441 aa26.91■■□□□ 1.9
PTPN7-209ENST00000477554 SYNMO15061 1565 aa26.91■■□□□ 1.9
PTPN7-209ENST00000477554 NEURL4Q96JN8 1562 aa26.91■■□□□ 1.9
PTPN7-209ENST00000477554 UBR1Q8IWV7 1749 aa26.89■■□□□ 1.9
PTPN7-209ENST00000477554 TET3O43151 1660 aa26.87■■□□□ 1.89
PTPN7-209ENST00000477554 PIK3C2BO00750 1634 aa26.87■■□□□ 1.89
PTPN7-209ENST00000477554 POLR1AO95602 1720 aaPredicted RBP26.86■■□□□ 1.89
PTPN7-209ENST00000477554 DMRT2Q9Y5R5 561 aa26.86■■□□□ 1.89
PTPN7-209ENST00000477554 NAIPQ13075 1403 aa26.85■■□□□ 1.89
PTPN7-209ENST00000477554 IQGAP3Q86VI3 1631 aa26.85■■□□□ 1.89
PTPN7-209ENST00000477554 NOS1P29475 1434 aa26.84■■□□□ 1.89
PTPN7-209ENST00000477554 E9PCH4 1651 aa26.84■■□□□ 1.89
PTPN7-209ENST00000477554 GCC2Q8IWJ2 1684 aa26.83■■□□□ 1.89
PTPN7-209ENST00000477554 PKD2Q13563 968 aa26.82■■□□□ 1.88
PTPN7-209ENST00000477554 LTBP4Q8N2S1 1624 aa26.82■■□□□ 1.88
PTPN7-209ENST00000477554 NUP155O75694 1391 aa26.81■■□□□ 1.88
PTPN7-209ENST00000477554 IDI1Q13907 227 aa26.81■■□□□ 1.88
PTPN7-209ENST00000477554 THEMISQ8N1K5 641 aaPredicted RBP26.81■■□□□ 1.88
PTPN7-209ENST00000477554 ZNF335Q9H4Z2 1342 aaPredicted RBP26.8■■□□□ 1.88
PTPN7-209ENST00000477554 CERKQ8TCT0 537 aa26.79■■□□□ 1.88
PTPN7-209ENST00000477554 LTKP29376 864 aa26.75■■□□□ 1.87
PTPN7-209ENST00000477554 RPRD2Q5VT52 1461 aaKnown RBP26.74■■□□□ 1.87
PTPN7-209ENST00000477554 ANKLE2Q86XL3 938 aa26.74■■□□□ 1.87
PTPN7-209ENST00000477554 HFM1A2PYH4 1435 aa26.74■■□□□ 1.87
PTPN7-209ENST00000477554 MYO5BQ9ULV0 1848 aa26.74■■□□□ 1.87
PTPN7-209ENST00000477554 ARHGAP23Q9P227 1491 aa26.73■■□□□ 1.87
PTPN7-209ENST00000477554 NPHP4O75161 1426 aaPredicted RBP26.71■■□□□ 1.87
PTPN7-209ENST00000477554 SLIT1O75093 1534 aa26.71■■□□□ 1.87
PTPN7-209ENST00000477554 MED14O60244 1454 aa26.71■■□□□ 1.87
PTPN7-209ENST00000477554 IQGAP1P46940 1657 aa26.7■■□□□ 1.87
PTPN7-209ENST00000477554 ADGRB3O60242 1522 aa26.69■■□□□ 1.86
PTPN7-209ENST00000477554 FBXO41Q8TF61 875 aa26.69■■□□□ 1.86
PTPN7-209ENST00000477554 SCAF11Q99590 1463 aaKnown RBP26.67■■□□□ 1.86
PTPN7-209ENST00000477554 TMEM2Q9UHN6 1383 aa26.67■■□□□ 1.86
PTPN7-209ENST00000477554 KDM5AP29375 1690 aaKnown RBP26.66■■□□□ 1.86
PTPN7-209ENST00000477554 STRCP1A6NGW2 1772 aa26.65■■□□□ 1.86
PTPN7-209ENST00000477554 TXNDC2Q86VQ3 553 aa26.65■■□□□ 1.86
PTPN7-209ENST00000477554 SENP3Q9H4L4 574 aaPredicted RBP26.65■■□□□ 1.86
PTPN7-209ENST00000477554 STAG3Q9UJ98 1225 aa26.65■■□□□ 1.86
PTPN7-209ENST00000477554 TMEM131LA2VDJ0 1609 aa26.64■■□□□ 1.86
PTPN7-209ENST00000477554 SLC52A1Q9NWF4 448 aa26.63■■□□□ 1.85
PTPN7-209ENST00000477554 SPHKAPQ2M3C7 1700 aa26.61■■□□□ 1.85
PTPN7-209ENST00000477554 TRIM52Q96A61 297 aa26.6■■□□□ 1.85
PTPN7-209ENST00000477554 CHGAP10645 457 aaKnown RBP26.56■■□□□ 1.84
PTPN7-209ENST00000477554 ZFYVE9O95405 1425 aa26.56■■□□□ 1.84
PTPN7-209ENST00000477554 NUTM2DQ5VT03 806 aaPredicted RBP26.56■■□□□ 1.84
PTPN7-209ENST00000477554 CLTCL1P53675 1640 aa26.54■■□□□ 1.84
PTPN7-209ENST00000477554 FOXD1Q16676 465 aa26.54■■□□□ 1.84
PTPN7-209ENST00000477554 EID1Q9Y6B2 187 aa26.53■■□□□ 1.84
PTPN7-209ENST00000477554 RIMS2Q9UQ26 1411 aa26.52■■□□□ 1.84
PTPN7-209ENST00000477554 SLC26A8Q96RN1 970 aa26.5■■□□□ 1.83
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms