RNA–Protein interactions for RNA: ENST00000477538.1

VHL-203, Transcript of von Hippel-Lindau tumor suppressor, humanhuman

TSL 1 (best)

Gene VHL, Length 958 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VHL-203ENST00000477538 KIF3BO15066 747 aa24.16■■□□□ 1.46
VHL-203ENST00000477538 PRDM15P57071 1507 aaPredicted RBP24.15■■□□□ 1.46
VHL-203ENST00000477538 CEP152O94986 1710 aa24.14■■□□□ 1.45
VHL-203ENST00000477538 IQGAP3Q86VI3 1631 aa24.12■■□□□ 1.45
VHL-203ENST00000477538 ARID4BQ4LE39 1312 aaPredicted RBP24.11■■□□□ 1.45
VHL-203ENST00000477538 ZC3H13Q5T200 1668 aaKnown RBP24.11■■□□□ 1.45
VHL-203ENST00000477538 KDM5DQ9BY66 1539 aa24.1■■□□□ 1.45
VHL-203ENST00000477538 FER1L4A9Z1Z3 1794 aa24.09■■□□□ 1.45
VHL-203ENST00000477538 HRCP23327 699 aa24.09■■□□□ 1.45
VHL-203ENST00000477538 ACIN1Q9UKV3 1341 aaKnown RBP24.08■■□□□ 1.44
VHL-203ENST00000477538 VWDEQ8N2E2 1590 aa24.08■■□□□ 1.44
VHL-203ENST00000477538 GGT6Q6P531 493 aa24.07■■□□□ 1.44
VHL-203ENST00000477538 CLTCQ00610 1675 aaKnown RBP24.07■■□□□ 1.44
VHL-203ENST00000477538 TRIM52Q96A61 297 aa24.05■■□□□ 1.44
VHL-203ENST00000477538 GRWD1Q9BQ67 446 aaKnown RBP eCLIP24.05■■□□□ 1.449e-12■□□□□ 9.2
VHL-203ENST00000477538 FAM135AQ9P2D6 1515 aa24.05■■□□□ 1.44
VHL-203ENST00000477538 KANK1Q14678 1352 aa24.04■■□□□ 1.44
VHL-203ENST00000477538 MLECQ14165 292 aa24.04■■□□□ 1.44
VHL-203ENST00000477538 TET3O43151 1660 aa24.04■■□□□ 1.44
VHL-203ENST00000477538 CFAP65Q6ZU64 1925 aaKnown RBP24.04■■□□□ 1.44
VHL-203ENST00000477538 NUP155O75694 1391 aa24.03■■□□□ 1.44
VHL-203ENST00000477538 CAMSAP1Q5T5Y3 1602 aa24.02■■□□□ 1.44
VHL-203ENST00000477538 ADAMTSL3P82987 1691 aa24.02■■□□□ 1.44
VHL-203ENST00000477538 ABCC3O15438 1527 aa24.02■■□□□ 1.44
VHL-203ENST00000477538 PZPP20742 1482 aa24.01■■□□□ 1.43
VHL-203ENST00000477538 MROH2AA6NES4 1674 aa24■■□□□ 1.43
VHL-203ENST00000477538 MADDQ8WXG6 1647 aa23.99■■□□□ 1.43
VHL-203ENST00000477538 LMTK2Q8IWU2 1503 aa23.99■■□□□ 1.43
VHL-203ENST00000477538 E9PCH4 1651 aa23.98■■□□□ 1.43
VHL-203ENST00000477538 RIMS1Q86UR5 1692 aaKnown RBP23.98■■□□□ 1.43
VHL-203ENST00000477538 PPP6R1Q9UPN7 881 aa23.97■■□□□ 1.43
VHL-203ENST00000477538 WASHC2CQ9Y4E1 1318 aa23.96■■□□□ 1.43
VHL-203ENST00000477538 EFCAB6Q5THR3 1501 aa23.95■■□□□ 1.43
VHL-203ENST00000477538 CNTLNQ9NXG0 1405 aa23.93■■□□□ 1.42
VHL-203ENST00000477538 SLC4A1APQ9BWU0 796 aaKnown RBP23.92■■□□□ 1.42
VHL-203ENST00000477538 ESF1Q9H501 851 aaKnown RBP23.92■■□□□ 1.42
VHL-203ENST00000477538 C3P01024 1663 aa23.92■■□□□ 1.42
VHL-203ENST00000477538 MPHOSPH9Q99550 1183 aa23.91■■□□□ 1.42
VHL-203ENST00000477538 SPHKAPQ2M3C7 1700 aa23.9■■□□□ 1.42
VHL-203ENST00000477538 DHX57Q6P158 1386 aaKnown RBP23.89■■□□□ 1.41
VHL-203ENST00000477538 PREX1Q8TCU6 1659 aa23.88■■□□□ 1.41
VHL-203ENST00000477538 ARHGAP31Q2M1Z3 1444 aa23.85■■□□□ 1.41
VHL-203ENST00000477538 RPRD2Q5VT52 1461 aaKnown RBP23.85■■□□□ 1.41
VHL-203ENST00000477538 NPATQ14207 1427 aa23.84■■□□□ 1.41
VHL-203ENST00000477538 PKD2Q13563 968 aa23.84■■□□□ 1.41
VHL-203ENST00000477538 ZMYM3Q14202 1370 aa23.82■■□□□ 1.4
VHL-203ENST00000477538 FOXD1Q16676 465 aa23.79■■□□□ 1.4
VHL-203ENST00000477538 SPATA31D1Q6ZQQ2 1576 aa23.77■■□□□ 1.4
VHL-203ENST00000477538 ERVK-7P63135 1459 aa23.76■■□□□ 1.39
VHL-203ENST00000477538 SETD1BQ9UPS6 1966 aaKnown RBP23.76■■□□□ 1.39
VHL-203ENST00000477538 PTPRMP28827 1452 aa23.75■■□□□ 1.39
VHL-203ENST00000477538 TRPM2O94759 1503 aa23.75■■□□□ 1.39
VHL-203ENST00000477538 SYNMO15061 1565 aa23.75■■□□□ 1.39
VHL-203ENST00000477538 KIF1BO60333 1816 aa23.74■■□□□ 1.39
VHL-203ENST00000477538 PTPRTO14522 1441 aa23.74■■□□□ 1.39
VHL-203ENST00000477538 KDM4FA0A1W2PPD8 638 aa23.73■■□□□ 1.39
VHL-203ENST00000477538 CCER1Q8TC90 406 aaPredicted RBP23.73■■□□□ 1.39
VHL-203ENST00000477538 NOS1P29475 1434 aa23.73■■□□□ 1.39
VHL-203ENST00000477538 CEBPAP49715 358 aaPredicted RBP23.72■■□□□ 1.39
VHL-203ENST00000477538 PIK3C2BO00750 1634 aa23.72■■□□□ 1.39
VHL-203ENST00000477538 CLTCL1P53675 1640 aa23.72■■□□□ 1.39
VHL-203ENST00000477538 PLA2R1Q13018 1463 aa23.71■■□□□ 1.39
VHL-203ENST00000477538 ANKRD30BQ9BXX2 1392 aa23.71■■□□□ 1.39
VHL-203ENST00000477538 FBXO31Q5XUX0 539 aaPredicted RBP23.71■■□□□ 1.39
VHL-203ENST00000477538 PLPPR3Q6T4P5 718 aa23.7■■□□□ 1.38
VHL-203ENST00000477538 MYO5BQ9ULV0 1848 aa23.69■■□□□ 1.38
VHL-203ENST00000477538 UGGT1Q9NYU2 1555 aa23.69■■□□□ 1.38
VHL-203ENST00000477538 MYO3AQ8NEV4 1616 aa23.67■■□□□ 1.38
VHL-203ENST00000477538 TNRQ92752 1358 aa23.65■■□□□ 1.38
VHL-203ENST00000477538 CCDC144AA2RUR9 1427 aa23.65■■□□□ 1.38
VHL-203ENST00000477538 CLSPNQ9HAW4 1339 aa23.64■■□□□ 1.38
VHL-203ENST00000477538 ZNF142P52746 1687 aaPredicted RBP23.61■■□□□ 1.37
VHL-203ENST00000477538 KDM5AP29375 1690 aaKnown RBP23.6■■□□□ 1.37
VHL-203ENST00000477538 UBR1Q8IWV7 1749 aa23.59■■□□□ 1.37
VHL-203ENST00000477538 NLRP1Q9C000 1473 aa23.59■■□□□ 1.37
VHL-203ENST00000477538 SLC52A1Q9NWF4 448 aa23.58■■□□□ 1.37
VHL-203ENST00000477538 TMEM131LA2VDJ0 1609 aa23.58■■□□□ 1.36
VHL-203ENST00000477538 SIN3AQ96ST3 1273 aa23.57■■□□□ 1.36
VHL-203ENST00000477538 ADGRB3O60242 1522 aa23.57■■□□□ 1.36
VHL-203ENST00000477538 CEP170BQ9Y4F5 1589 aaPredicted RBP23.56■■□□□ 1.36
VHL-203ENST00000477538 IDI1Q13907 227 aa23.55■■□□□ 1.36
VHL-203ENST00000477538 NEURL4Q96JN8 1562 aa23.55■■□□□ 1.36
VHL-203ENST00000477538 NEUROD1Q13562 356 aa23.53■■□□□ 1.36
VHL-203ENST00000477538 A2ML1A8K2U0 1454 aa23.53■■□□□ 1.36
VHL-203ENST00000477538 IFT172Q9UG01 1749 aa23.52■■□□□ 1.36
VHL-203ENST00000477538 PPLO60437 1756 aa23.51■■□□□ 1.35
VHL-203ENST00000477538 UHRF1BP1Q6BDS2 1440 aa23.5■■□□□ 1.35
VHL-203ENST00000477538 SPATA31E1Q6ZUB1 1445 aa23.5■■□□□ 1.35
VHL-203ENST00000477538 CHGAP10645 457 aaKnown RBP23.49■■□□□ 1.35
VHL-203ENST00000477538 STAG3Q9UJ98 1225 aa23.47■■□□□ 1.35
VHL-203ENST00000477538 TONSLQ96HA7 1378 aa23.43■■□□□ 1.34
VHL-203ENST00000477538 RGL3Q3MIN7 710 aa23.42■■□□□ 1.34
VHL-203ENST00000477538 NEXMIFQ5QGS0 1516 aa23.42■■□□□ 1.34
VHL-203ENST00000477538 ZNF326Q5BKZ1 582 aaKnown RBP23.41■■□□□ 1.34
VHL-203ENST00000477538 POLR1AO95602 1720 aaPredicted RBP23.4■■□□□ 1.34
VHL-203ENST00000477538 SLIT1O75093 1534 aa23.38■■□□□ 1.33
VHL-203ENST00000477538 LMTK3Q96Q04 1460 aa23.38■■□□□ 1.33
VHL-203ENST00000477538 THEMISQ8N1K5 641 aaPredicted RBP23.37■■□□□ 1.33
VHL-203ENST00000477538 L3MBTL2Q969R5 705 aa23.36■■□□□ 1.33
VHL-203ENST00000477538 ARHGAP23Q9P227 1491 aa23.36■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms