RNA–Protein interactions for RNA: ENST00000476494.1

CLDN4-205, Transcript of claudin 4, humanhuman

TSL 4

Gene CLDN4, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN4-205ENST00000476494 PREX2Q70Z35 1606 aa11□□□□□ -0.65
CLDN4-205ENST00000476494 A2MP01023 1474 aa11□□□□□ -0.65
CLDN4-205ENST00000476494 ZNF772Q68DY9 489 aaPredicted RBP10.99□□□□□ -0.65
CLDN4-205ENST00000476494 JCADQ9P266 1359 aa10.99□□□□□ -0.65
CLDN4-205ENST00000476494 MIA2Q96PC5 1412 aa10.99□□□□□ -0.65
CLDN4-205ENST00000476494 UGGT1Q9NYU2 1555 aa10.99□□□□□ -0.65
CLDN4-205ENST00000476494 RXRBP28702 533 aa10.98□□□□□ -0.65
CLDN4-205ENST00000476494 PZPP20742 1482 aa10.98□□□□□ -0.65
CLDN4-205ENST00000476494 RANGAP1P46060 587 aaPredicted RBP10.97□□□□□ -0.65
CLDN4-205ENST00000476494 CDK11AQ9UQ88 783 aaPredicted RBP10.97□□□□□ -0.65
CLDN4-205ENST00000476494 SPAG9O60271 1321 aaKnown RBP10.97□□□□□ -0.65
CLDN4-205ENST00000476494 NLRP1Q9C000 1473 aa10.97□□□□□ -0.65
CLDN4-205ENST00000476494 ATP7AQ04656 1500 aa10.96□□□□□ -0.65
CLDN4-205ENST00000476494 KDM5DQ9BY66 1539 aa10.96□□□□□ -0.65
CLDN4-205ENST00000476494 FAM135AQ9P2D6 1515 aa10.96□□□□□ -0.65
CLDN4-205ENST00000476494 INO80Q9ULG1 1556 aaPredicted RBP10.95□□□□□ -0.66
CLDN4-205ENST00000476494 PHLPP1O60346 1717 aa10.94□□□□□ -0.66
CLDN4-205ENST00000476494 CDC42BPAQ5VT25 1732 aa10.94□□□□□ -0.66
CLDN4-205ENST00000476494 COL16A1Q07092 1604 aaPredicted RBP10.94□□□□□ -0.66
CLDN4-205ENST00000476494 MAP3K1Q13233 1512 aa10.94□□□□□ -0.66
CLDN4-205ENST00000476494 LRRIQ1Q96JM4 1722 aa10.93□□□□□ -0.66
CLDN4-205ENST00000476494 HNRNPMP52272 730 aaKnown RBP eCLIP10.93□□□□□ -0.66
CLDN4-205ENST00000476494 ZRANB1Q9UGI0 708 aa10.93□□□□□ -0.66
CLDN4-205ENST00000476494 TMEM94Q12767 1356 aa10.92□□□□□ -0.66
CLDN4-205ENST00000476494 SPATA31A6Q5VVP1 1343 aa10.92□□□□□ -0.66
CLDN4-205ENST00000476494 LTKP29376 864 aa10.92□□□□□ -0.66
CLDN4-205ENST00000476494 SYCP2Q9BX26 1530 aa10.92□□□□□ -0.66
CLDN4-205ENST00000476494 CLIP1P30622 1438 aa10.92□□□□□ -0.66
CLDN4-205ENST00000476494 CSRNP3Q8WYN3 585 aa10.91□□□□□ -0.66
CLDN4-205ENST00000476494 RGS12O14924 1447 aa10.91□□□□□ -0.66
CLDN4-205ENST00000476494 FGD6Q6ZV73 1430 aa10.91□□□□□ -0.66
CLDN4-205ENST00000476494 ADGBQ8N7X0 1667 aa10.89□□□□□ -0.67
CLDN4-205ENST00000476494 KIAA1107Q9UPP5 1409 aa10.89□□□□□ -0.67
CLDN4-205ENST00000476494 LRRC9Q6ZRR7 1453 aa10.88□□□□□ -0.67
CLDN4-205ENST00000476494 ARHGAP23Q9P227 1491 aa10.88□□□□□ -0.67
CLDN4-205ENST00000476494 EP400Q96L91 3159 aa10.88□□□□□ -0.67
CLDN4-205ENST00000476494 SLAIN2Q9P270 581 aa10.88□□□□□ -0.67
CLDN4-205ENST00000476494 NCOA2Q15596 1464 aa10.87□□□□□ -0.67
CLDN4-205ENST00000476494 SCAF11Q99590 1463 aaKnown RBP10.87□□□□□ -0.67
CLDN4-205ENST00000476494 RBM33Q96EV2 1170 aaKnown RBP10.87□□□□□ -0.67
CLDN4-205ENST00000476494 DHX29Q7Z478 1369 aaKnown RBP10.87□□□□□ -0.67
CLDN4-205ENST00000476494 SHPRHQ149N8 1683 aa10.86□□□□□ -0.67
CLDN4-205ENST00000476494 FMN1Q68DA7 1419 aa10.86□□□□□ -0.67
CLDN4-205ENST00000476494 IFFO2Q5TF58 517 aa10.86□□□□□ -0.67
CLDN4-205ENST00000476494 ATP1B4Q9UN42 357 aaPredicted RBP10.86□□□□□ -0.67
CLDN4-205ENST00000476494 UBR1Q8IWV7 1749 aa10.86□□□□□ -0.67
CLDN4-205ENST00000476494 SLIT1O75093 1534 aa10.85□□□□□ -0.67
CLDN4-205ENST00000476494 GPATCH8Q9UKJ3 1502 aaKnown RBP10.85□□□□□ -0.67
CLDN4-205ENST00000476494 KCNA6P17658 529 aa10.85□□□□□ -0.67
CLDN4-205ENST00000476494 MEX3CQ5U5Q3 659 aaKnown RBP10.85□□□□□ -0.67
CLDN4-205ENST00000476494 AFF2P51816 1311 aa10.84□□□□□ -0.67
CLDN4-205ENST00000476494 LRP5O75197 1615 aa10.84□□□□□ -0.67
CLDN4-205ENST00000476494 RBM6P78332 1123 aaKnown RBP10.84□□□□□ -0.67
CLDN4-205ENST00000476494 ZNF777Q9ULD5 760 aaPredicted RBP10.84□□□□□ -0.67
CLDN4-205ENST00000476494 PRDM15P57071 1507 aaPredicted RBP10.84□□□□□ -0.67
CLDN4-205ENST00000476494 TXNDC2Q86VQ3 553 aa10.83□□□□□ -0.68
CLDN4-205ENST00000476494 WASHC2CQ9Y4E1 1318 aa10.83□□□□□ -0.68
CLDN4-205ENST00000476494 DIP2AQ14689 1571 aa10.82□□□□□ -0.68
CLDN4-205ENST00000476494 NUTM2BA6NNL0 878 aaPredicted RBP10.82□□□□□ -0.68
CLDN4-205ENST00000476494 NUTM2EB1AL46 878 aaPredicted RBP10.82□□□□□ -0.68
CLDN4-205ENST00000476494 KIF3BO15066 747 aa10.82□□□□□ -0.68
CLDN4-205ENST00000476494 NUTM2DQ5VT03 806 aaPredicted RBP10.82□□□□□ -0.68
CLDN4-205ENST00000476494 PROSER2Q86WR7 435 aaPredicted RBP10.82□□□□□ -0.68
CLDN4-205ENST00000476494 NUTM2AQ8IVF1 878 aaPredicted RBP10.82□□□□□ -0.68
CLDN4-205ENST00000476494 QTRT2Q9H974 415 aaKnown RBP10.82□□□□□ -0.68
CLDN4-205ENST00000476494 TIAM1Q13009 1591 aa10.82□□□□□ -0.68
CLDN4-205ENST00000476494 FOXD1Q16676 465 aa10.81□□□□□ -0.68
CLDN4-205ENST00000476494 TET3O43151 1660 aa10.81□□□□□ -0.68
CLDN4-205ENST00000476494 RTEL1-TNFRSF6BF6WH68 1400 aa10.81□□□□□ -0.68
CLDN4-205ENST00000476494 ARHGAP35Q9NRY4 1499 aa10.81□□□□□ -0.68
CLDN4-205ENST00000476494 MBD5Q9P267 1494 aa10.81□□□□□ -0.68
CLDN4-205ENST00000476494 AHDC1Q5TGY3 1603 aaPredicted RBP10.8□□□□□ -0.68
CLDN4-205ENST00000476494 ATAD2Q6PL18 1390 aa10.8□□□□□ -0.68
CLDN4-205ENST00000476494 ERVK-7P63135 1459 aa10.79□□□□□ -0.68
CLDN4-205ENST00000476494 PLEKHH2Q8IVE3 1493 aa10.79□□□□□ -0.68
CLDN4-205ENST00000476494 ABCC3O15438 1527 aa10.79□□□□□ -0.68
CLDN4-205ENST00000476494 MSH6P52701 1360 aa10.78□□□□□ -0.68
CLDN4-205ENST00000476494 NWD1Q149M9 1564 aa10.78□□□□□ -0.68
CLDN4-205ENST00000476494 CFAP65Q6ZU64 1925 aaKnown RBP10.78□□□□□ -0.68
CLDN4-205ENST00000476494 NKTRP30414 1462 aaKnown RBP10.77□□□□□ -0.69
CLDN4-205ENST00000476494 CCDC125Q86Z20 511 aa10.77□□□□□ -0.69
CLDN4-205ENST00000476494 KDM5AP29375 1690 aaKnown RBP10.76□□□□□ -0.69
CLDN4-205ENST00000476494 ZNF644Q9H582 1327 aaPredicted RBP10.76□□□□□ -0.69
CLDN4-205ENST00000476494 CAMSAP2Q08AD1 1489 aa10.74□□□□□ -0.69
CLDN4-205ENST00000476494 SLC26A8Q96RN1 970 aa10.74□□□□□ -0.69
CLDN4-205ENST00000476494 CFDP1Q9UEE9 299 aaPredicted RBP10.74□□□□□ -0.69
CLDN4-205ENST00000476494 TMEM2Q9UHN6 1383 aa10.74□□□□□ -0.69
CLDN4-205ENST00000476494 EID1Q9Y6B2 187 aa10.73□□□□□ -0.69
CLDN4-205ENST00000476494 MAST1Q9Y2H9 1570 aa10.73□□□□□ -0.69
CLDN4-205ENST00000476494 NGLY1Q96IV0 654 aa10.72□□□□□ -0.69
CLDN4-205ENST00000476494 SETD5Q9C0A6 1442 aa10.72□□□□□ -0.69
CLDN4-205ENST00000476494 CCDC18Q5T9S5 1454 aa10.72□□□□□ -0.69
CLDN4-205ENST00000476494 CHD2O14647 1828 aaKnown RBP10.71□□□□□ -0.69
CLDN4-205ENST00000476494 NHSL1Q5SYE7 1610 aa10.71□□□□□ -0.69
CLDN4-205ENST00000476494 C8orf37Q96NL8 207 aa10.71□□□□□ -0.69
CLDN4-205ENST00000476494 NCOA3Q9Y6Q9 1424 aa10.71□□□□□ -0.69
CLDN4-205ENST00000476494 BCL9LQ86UU0 1499 aa10.7□□□□□ -0.7
CLDN4-205ENST00000476494 CASKIN1Q8WXD9 1431 aa10.7□□□□□ -0.7
CLDN4-205ENST00000476494 BRINP3Q76B58 766 aa10.7□□□□□ -0.7
CLDN4-205ENST00000476494 HRCP23327 699 aa10.69□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms