RNA–Protein interactions for RNA: ENST00000475375.1

VPS36-203, Transcript of vacuolar protein sorting 36 homolog, humanhuman

TSL 2

Gene VPS36, Length 754 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS36-203ENST00000475375 TNRQ92752 1358 aa32.82■■■□□ 2.84
VPS36-203ENST00000475375 FBXO31Q5XUX0 539 aaPredicted RBP32.81■■■□□ 2.84
VPS36-203ENST00000475375 CCDC141Q6ZP82 1450 aa32.8■■■□□ 2.84
VPS36-203ENST00000475375 SCAF1Q9H7N4 1312 aaKnown RBP32.77■■■□□ 2.84
VPS36-203ENST00000475375 WASHC2CQ9Y4E1 1318 aa32.77■■■□□ 2.84
VPS36-203ENST00000475375 CAMSAP2Q08AD1 1489 aa32.76■■■□□ 2.84
VPS36-203ENST00000475375 KDM5DQ9BY66 1539 aa32.76■■■□□ 2.83
VPS36-203ENST00000475375 NCOA2Q15596 1464 aa32.74■■■□□ 2.83
VPS36-203ENST00000475375 PZPP20742 1482 aa32.74■■■□□ 2.83
VPS36-203ENST00000475375 RSPH4AQ5TD94 716 aa32.73■■■□□ 2.83
VPS36-203ENST00000475375 PIP4K2BP78356 416 aa32.71■■■□□ 2.83
VPS36-203ENST00000475375 POLR1AO95602 1720 aaPredicted RBP32.71■■■□□ 2.83
VPS36-203ENST00000475375 FAM135AQ9P2D6 1515 aa32.7■■■□□ 2.83
VPS36-203ENST00000475375 ANKLE2Q86XL3 938 aa32.69■■■□□ 2.82
VPS36-203ENST00000475375 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP32.68■■■□□ 2.82
VPS36-203ENST00000475375 NEURL4Q96JN8 1562 aa32.67■■■□□ 2.82
VPS36-203ENST00000475375 TSPY4P0CV99 314 aa32.67■■■□□ 2.82
VPS36-203ENST00000475375 TSPY10P0CW01 314 aa32.67■■■□□ 2.82
VPS36-203ENST00000475375 CPS1P31327 1500 aa32.67■■■□□ 2.82
VPS36-203ENST00000475375 TOM1O60784 492 aa32.66■■■□□ 2.82
VPS36-203ENST00000475375 THEMISQ8N1K5 641 aaPredicted RBP32.66■■■□□ 2.82
VPS36-203ENST00000475375 SHANK2Q9UPX8 1470 aa32.66■■■□□ 2.82
VPS36-203ENST00000475375 MIA2Q96PC5 1412 aa32.64■■■□□ 2.82
VPS36-203ENST00000475375 HSPA1LP34931 641 aa32.63■■■□□ 2.81
VPS36-203ENST00000475375 NLRP1Q9C000 1473 aa32.61■■■□□ 2.81
VPS36-203ENST00000475375 UGGT1Q9NYU2 1555 aa32.6■■■□□ 2.81
VPS36-203ENST00000475375 ARHGEF5Q12774 1597 aa32.59■■■□□ 2.81
VPS36-203ENST00000475375 NPHP4O75161 1426 aaPredicted RBP32.57■■■□□ 2.8
VPS36-203ENST00000475375 VWDEQ8N2E2 1590 aa32.53■■■□□ 2.8
VPS36-203ENST00000475375 MED14O60244 1454 aa32.5■■■□□ 2.79
VPS36-203ENST00000475375 DEPDC5O75140 1603 aa32.5■■■□□ 2.79
VPS36-203ENST00000475375 MED1Q15648 1581 aaPredicted RBP32.49■■■□□ 2.79
VPS36-203ENST00000475375 ABCC3O15438 1527 aa32.48■■■□□ 2.79
VPS36-203ENST00000475375 LRRC9Q6ZRR7 1453 aa32.48■■■□□ 2.79
VPS36-203ENST00000475375 RNF17Q9BXT8 1623 aaKnown RBP32.48■■■□□ 2.79
VPS36-203ENST00000475375 IQGAP1P46940 1657 aa32.46■■■□□ 2.79
VPS36-203ENST00000475375 ZC3H13Q5T200 1668 aaKnown RBP32.43■■■□□ 2.78
VPS36-203ENST00000475375 MAST1Q9Y2H9 1570 aa32.43■■■□□ 2.78
VPS36-203ENST00000475375 ERVK-7P63135 1459 aa32.42■■■□□ 2.78
VPS36-203ENST00000475375 SENP3Q9H4L4 574 aaPredicted RBP32.42■■■□□ 2.78
VPS36-203ENST00000475375 VPS8Q8N3P4 1428 aa32.42■■■□□ 2.78
VPS36-203ENST00000475375 PHF23Q9BUL5 403 aaPredicted RBP32.39■■■□□ 2.78
VPS36-203ENST00000475375 EIF2AK4Q9P2K8 1649 aaKnown RBP32.39■■■□□ 2.78
VPS36-203ENST00000475375 KANK4Q5T7N3 995 aaPredicted RBP32.35■■■□□ 2.77
VPS36-203ENST00000475375 ALKQ9UM73 1620 aa32.34■■■□□ 2.77
VPS36-203ENST00000475375 LRRC7Q96NW7 1537 aa32.34■■■□□ 2.77
VPS36-203ENST00000475375 MYOM3Q5VTT5 1437 aa32.34■■■□□ 2.77
VPS36-203ENST00000475375 MROH1Q8NDA8 1641 aa32.33■■■□□ 2.77
VPS36-203ENST00000475375 CEP152O94986 1710 aa32.33■■■□□ 2.77
VPS36-203ENST00000475375 STRCP1A6NGW2 1772 aa32.31■■■□□ 2.76
VPS36-203ENST00000475375 DUOX2Q9NRD8 1548 aa32.31■■■□□ 2.76
VPS36-203ENST00000475375 CFAP65Q6ZU64 1925 aaKnown RBP32.3■■■□□ 2.76
VPS36-203ENST00000475375 LOC105371045A0A1W2PR82 267 aa32.3■■■□□ 2.76
VPS36-203ENST00000475375 SCAF11Q99590 1463 aaKnown RBP32.29■■■□□ 2.76
VPS36-203ENST00000475375 SYNMO15061 1565 aa32.29■■■□□ 2.76
VPS36-203ENST00000475375 UBR1Q8IWV7 1749 aa32.28■■■□□ 2.76
VPS36-203ENST00000475375 TXNDC2Q86VQ3 553 aa32.27■■■□□ 2.76
VPS36-203ENST00000475375 KIF15Q9NS87 1388 aa32.26■■■□□ 2.75
VPS36-203ENST00000475375 MAP3K1Q13233 1512 aa32.25■■■□□ 2.75
VPS36-203ENST00000475375 GRWD1Q9BQ67 446 aaKnown RBP eCLIP32.24■■■□□ 2.751e-8■□□□□ 11.1
VPS36-203ENST00000475375 RRP7BPQ9NSQ0 103 aa32.24■■■□□ 2.75
VPS36-203ENST00000475375 LTKP29376 864 aa32.23■■■□□ 2.75
VPS36-203ENST00000475375 EID1Q9Y6B2 187 aa32.22■■■□□ 2.75
VPS36-203ENST00000475375 ERBINQ96RT1 1412 aa32.19■■■□□ 2.74
VPS36-203ENST00000475375 STAG3Q9UJ98 1225 aa32.19■■■□□ 2.74
VPS36-203ENST00000475375 ARHGAP31Q2M1Z3 1444 aa32.18■■■□□ 2.74
VPS36-203ENST00000475375 ARHGAP23Q9P227 1491 aa32.18■■■□□ 2.74
VPS36-203ENST00000475375 SLIT1O75093 1534 aa32.18■■■□□ 2.74
VPS36-203ENST00000475375 PRDM15P57071 1507 aaPredicted RBP32.18■■■□□ 2.74
VPS36-203ENST00000475375 ABCC5O15440 1437 aa32.16■■■□□ 2.74
VPS36-203ENST00000475375 KANK1Q14678 1352 aa32.15■■■□□ 2.74
VPS36-203ENST00000475375 APLP2Q06481 763 aa32.13■■■□□ 2.73
VPS36-203ENST00000475375 CROCC2H7BZ55 1655 aa32.12■■■□□ 2.73
VPS36-203ENST00000475375 PTPN23Q9H3S7 1636 aa32.11■■■□□ 2.73
VPS36-203ENST00000475375 PIK3C2BO00750 1634 aa32.1■■■□□ 2.73
VPS36-203ENST00000475375 TMEM2Q9UHN6 1383 aa32.09■■■□□ 2.73
VPS36-203ENST00000475375 DAPK1P53355 1430 aa32.08■■■□□ 2.73
VPS36-203ENST00000475375 CHIC2Q9UKJ5 165 aa32.06■■■□□ 2.72
VPS36-203ENST00000475375 EFCAB6Q5THR3 1501 aa32.03■■■□□ 2.72
VPS36-203ENST00000475375 ANKRD30AQ9BXX3 1397 aa32.03■■■□□ 2.72
VPS36-203ENST00000475375 XIRP1Q702N8 1843 aaKnown RBP32.03■■■□□ 2.72
VPS36-203ENST00000475375 IDI1Q13907 227 aa32.02■■■□□ 2.72
VPS36-203ENST00000475375 TMEM94Q12767 1356 aa32.01■■■□□ 2.71
VPS36-203ENST00000475375 FGD6Q6ZV73 1430 aa32■■■□□ 2.71
VPS36-203ENST00000475375 SLC26A8Q96RN1 970 aa31.99■■■□□ 2.71
VPS36-203ENST00000475375 KCNA6P17658 529 aa31.97■■■□□ 2.71
VPS36-203ENST00000475375 PROSER2Q86WR7 435 aaPredicted RBP31.97■■■□□ 2.71
VPS36-203ENST00000475375 FAM135BQ49AJ0 1406 aa31.97■■■□□ 2.71
VPS36-203ENST00000475375 LMTK2Q8IWU2 1503 aa31.96■■■□□ 2.71
VPS36-203ENST00000475375 BCANQ96GW7 911 aa31.96■■■□□ 2.71
VPS36-203ENST00000475375 RBM33Q96EV2 1170 aaKnown RBP31.95■■■□□ 2.71
VPS36-203ENST00000475375 RGS17Q9UGC6 210 aaPredicted RBP31.95■■■□□ 2.71
VPS36-203ENST00000475375 KDM5AP29375 1690 aaKnown RBP31.94■■■□□ 2.7
VPS36-203ENST00000475375 NOS1P29475 1434 aa31.89■■■□□ 2.7
VPS36-203ENST00000475375 ADGRB3O60242 1522 aa31.89■■■□□ 2.7
VPS36-203ENST00000475375 TET3O43151 1660 aa31.88■■■□□ 2.69
VPS36-203ENST00000475375 SLC52A1Q9NWF4 448 aa31.87■■■□□ 2.69
VPS36-203ENST00000475375 ROBO1Q9Y6N7 1651 aa31.86■■■□□ 2.69
VPS36-203ENST00000475375 FAM50AQ14320 339 aaKnown RBP31.83■■■□□ 2.69
VPS36-203ENST00000475375 NKTRP30414 1462 aaKnown RBP31.83■■■□□ 2.69
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms