RNA–Protein interactions for RNA: ENST00000474644.1

COL1A1-204, Transcript of collagen type I alpha 1 chain, humanhuman

TSL 3

Gene COL1A1, Length 640 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1-204ENST00000474644 GGT6Q6P531 493 aa23.84■■□□□ 1.41
COL1A1-204ENST00000474644 DEPDC5O75140 1603 aa23.82■■□□□ 1.4
COL1A1-204ENST00000474644 PRDM15P57071 1507 aaPredicted RBP23.82■■□□□ 1.4
COL1A1-204ENST00000474644 GCC2Q8IWJ2 1684 aa23.82■■□□□ 1.4
COL1A1-204ENST00000474644 FAM135AQ9P2D6 1515 aa23.81■■□□□ 1.4
COL1A1-204ENST00000474644 HFM1A2PYH4 1435 aa23.81■■□□□ 1.4
COL1A1-204ENST00000474644 NAIPQ13075 1403 aa23.81■■□□□ 1.4
COL1A1-204ENST00000474644 PTPRMP28827 1452 aa23.81■■□□□ 1.4
COL1A1-204ENST00000474644 KDM5DQ9BY66 1539 aa23.79■■□□□ 1.4
COL1A1-204ENST00000474644 CNTLNQ9NXG0 1405 aa23.79■■□□□ 1.4
COL1A1-204ENST00000474644 CLTCQ00610 1675 aaKnown RBP23.77■■□□□ 1.4
COL1A1-204ENST00000474644 PPP6R1Q9UPN7 881 aa23.77■■□□□ 1.4
COL1A1-204ENST00000474644 ESF1Q9H501 851 aaKnown RBP23.76■■□□□ 1.39
COL1A1-204ENST00000474644 MROH2AA6NES4 1674 aa23.76■■□□□ 1.39
COL1A1-204ENST00000474644 ABCC3O15438 1527 aa23.75■■□□□ 1.39
COL1A1-204ENST00000474644 UNC13BO14795 1591 aa23.75■■□□□ 1.39
COL1A1-204ENST00000474644 ZC3H13Q5T200 1668 aaKnown RBP23.75■■□□□ 1.39
COL1A1-204ENST00000474644 VWDEQ8N2E2 1590 aa23.73■■□□□ 1.39
COL1A1-204ENST00000474644 WASHC2CQ9Y4E1 1318 aa23.71■■□□□ 1.39
COL1A1-204ENST00000474644 C3P01024 1663 aa23.7■■□□□ 1.39
COL1A1-204ENST00000474644 CEP152O94986 1710 aa23.7■■□□□ 1.38
COL1A1-204ENST00000474644 KANK1Q14678 1352 aa23.69■■□□□ 1.38
COL1A1-204ENST00000474644 GRWD1Q9BQ67 446 aaKnown RBP eCLIP23.69■■□□□ 1.38
COL1A1-204ENST00000474644 ZMYM3Q14202 1370 aa23.68■■□□□ 1.38
COL1A1-204ENST00000474644 LMTK2Q8IWU2 1503 aa23.68■■□□□ 1.38
COL1A1-204ENST00000474644 CAMSAP1Q5T5Y3 1602 aa23.67■■□□□ 1.38
COL1A1-204ENST00000474644 CEBPAP49715 358 aaPredicted RBP23.66■■□□□ 1.38
COL1A1-204ENST00000474644 PLPPR3Q6T4P5 718 aa23.65■■□□□ 1.38
COL1A1-204ENST00000474644 IQGAP3Q86VI3 1631 aa23.64■■□□□ 1.38
COL1A1-204ENST00000474644 PZPP20742 1482 aa23.63■■□□□ 1.37
COL1A1-204ENST00000474644 SETD5Q9C0A6 1442 aa23.63■■□□□ 1.37
COL1A1-204ENST00000474644 EFCAB6Q5THR3 1501 aa23.61■■□□□ 1.37
COL1A1-204ENST00000474644 NUP155O75694 1391 aa23.61■■□□□ 1.37
COL1A1-204ENST00000474644 NPATQ14207 1427 aa23.59■■□□□ 1.37
COL1A1-204ENST00000474644 ARHGAP31Q2M1Z3 1444 aa23.59■■□□□ 1.37
COL1A1-204ENST00000474644 TET3O43151 1660 aa23.59■■□□□ 1.37
COL1A1-204ENST00000474644 TRIM26Q12899 539 aaPredicted RBP23.58■■□□□ 1.37
COL1A1-204ENST00000474644 RAB3GAP2Q9H2M9 1393 aa23.56■■□□□ 1.36
COL1A1-204ENST00000474644 ERVK-7P63135 1459 aa23.54■■□□□ 1.36
COL1A1-204ENST00000474644 SPATA31D1Q6ZQQ2 1576 aa23.53■■□□□ 1.36
COL1A1-204ENST00000474644 FBXO31Q5XUX0 539 aaPredicted RBP23.53■■□□□ 1.36
COL1A1-204ENST00000474644 PREX1Q8TCU6 1659 aa23.52■■□□□ 1.36
COL1A1-204ENST00000474644 RPRD2Q5VT52 1461 aaKnown RBP23.51■■□□□ 1.35
COL1A1-204ENST00000474644 TRIM52Q96A61 297 aa23.51■■□□□ 1.35
COL1A1-204ENST00000474644 ILDR1Q86SU0 546 aaPredicted RBP23.5■■□□□ 1.35
COL1A1-204ENST00000474644 MYO3AQ8NEV4 1616 aa23.5■■□□□ 1.35
COL1A1-204ENST00000474644 E9PCH4 1651 aa23.5■■□□□ 1.35
COL1A1-204ENST00000474644 TNRQ92752 1358 aa23.5■■□□□ 1.35
COL1A1-204ENST00000474644 LMTK3Q96Q04 1460 aa23.49■■□□□ 1.35
COL1A1-204ENST00000474644 UHRF1BP1Q6BDS2 1440 aa23.48■■□□□ 1.35
COL1A1-204ENST00000474644 ACIN1Q9UKV3 1341 aaKnown RBP23.46■■□□□ 1.35
COL1A1-204ENST00000474644 NOS1P29475 1434 aa23.45■■□□□ 1.34
COL1A1-204ENST00000474644 SYNMO15061 1565 aa23.44■■□□□ 1.34
COL1A1-204ENST00000474644 ZNF142P52746 1687 aaPredicted RBP23.44■■□□□ 1.34
COL1A1-204ENST00000474644 HRCP23327 699 aa23.43■■□□□ 1.34
COL1A1-204ENST00000474644 CEP170BQ9Y4F5 1589 aaPredicted RBP23.43■■□□□ 1.34
COL1A1-204ENST00000474644 NLRP1Q9C000 1473 aa23.43■■□□□ 1.34
COL1A1-204ENST00000474644 SLC4A1APQ9BWU0 796 aaKnown RBP23.42■■□□□ 1.34
COL1A1-204ENST00000474644 SETD1BQ9UPS6 1966 aaKnown RBP23.41■■□□□ 1.34
COL1A1-204ENST00000474644 A2ML1A8K2U0 1454 aa23.4■■□□□ 1.34
COL1A1-204ENST00000474644 CFAP65Q6ZU64 1925 aaKnown RBP23.39■■□□□ 1.33
COL1A1-204ENST00000474644 PKD2Q13563 968 aa23.38■■□□□ 1.33
COL1A1-204ENST00000474644 PTPRTO14522 1441 aa23.37■■□□□ 1.33
COL1A1-204ENST00000474644 MPHOSPH9Q99550 1183 aa23.37■■□□□ 1.33
COL1A1-204ENST00000474644 SPHKAPQ2M3C7 1700 aa23.36■■□□□ 1.33
COL1A1-204ENST00000474644 UGGT1Q9NYU2 1555 aa23.35■■□□□ 1.33
COL1A1-204ENST00000474644 TRPM2O94759 1503 aa23.34■■□□□ 1.33
COL1A1-204ENST00000474644 PIK3C2BO00750 1634 aa23.34■■□□□ 1.33
COL1A1-204ENST00000474644 PLA2R1Q13018 1463 aa23.32■■□□□ 1.32
COL1A1-204ENST00000474644 HSPA2P54652 639 aa23.32■■□□□ 1.32
COL1A1-204ENST00000474644 FOXD1Q16676 465 aa23.31■■□□□ 1.32
COL1A1-204ENST00000474644 ADGRB3O60242 1522 aa23.3■■□□□ 1.32
COL1A1-204ENST00000474644 SLC52A1Q9NWF4 448 aa23.3■■□□□ 1.32
COL1A1-204ENST00000474644 UBR1Q8IWV7 1749 aa23.3■■□□□ 1.32
COL1A1-204ENST00000474644 IDI1Q13907 227 aa23.29■■□□□ 1.32
COL1A1-204ENST00000474644 PCGF6Q9BYE7 350 aa23.28■■□□□ 1.32
COL1A1-204ENST00000474644 CLTCL1P53675 1640 aa23.27■■□□□ 1.32
COL1A1-204ENST00000474644 KDM5AP29375 1690 aaKnown RBP23.27■■□□□ 1.32
COL1A1-204ENST00000474644 TMEM131LA2VDJ0 1609 aa23.22■■□□□ 1.31
COL1A1-204ENST00000474644 THEMISQ8N1K5 641 aaPredicted RBP23.22■■□□□ 1.31
COL1A1-204ENST00000474644 STAG3Q9UJ98 1225 aa23.21■■□□□ 1.31
COL1A1-204ENST00000474644 SLIT1O75093 1534 aa23.19■■□□□ 1.3
COL1A1-204ENST00000474644 ARHGAP23Q9P227 1491 aa23.19■■□□□ 1.3
COL1A1-204ENST00000474644 CCDC144AA2RUR9 1427 aa23.19■■□□□ 1.3
COL1A1-204ENST00000474644 STRCQ7RTU9 1775 aa23.17■■□□□ 1.3
COL1A1-204ENST00000474644 ANKRD30BQ9BXX2 1392 aa23.17■■□□□ 1.3
COL1A1-204ENST00000474644 TMEM2Q9UHN6 1383 aa23.17■■□□□ 1.3
COL1A1-204ENST00000474644 DHX57Q6P158 1386 aaKnown RBP23.16■■□□□ 1.3
COL1A1-204ENST00000474644 CHGAP10645 457 aaKnown RBP23.16■■□□□ 1.3
COL1A1-204ENST00000474644 MYO5BQ9ULV0 1848 aa23.15■■□□□ 1.3
COL1A1-204ENST00000474644 POLR1AO95602 1720 aaPredicted RBP23.15■■□□□ 1.3
COL1A1-204ENST00000474644 NEURL4Q96JN8 1562 aa23.14■■□□□ 1.3
COL1A1-204ENST00000474644 FBXO41Q8TF61 875 aa23.13■■□□□ 1.29
COL1A1-204ENST00000474644 KIF1BO60333 1816 aa23.12■■□□□ 1.29
COL1A1-204ENST00000474644 NCKAP5LQ9HCH0 1330 aa23.12■■□□□ 1.29
COL1A1-204ENST00000474644 SCAF11Q99590 1463 aaKnown RBP23.12■■□□□ 1.29
COL1A1-204ENST00000474644 ZFYVE9O95405 1425 aa23.12■■□□□ 1.29
COL1A1-204ENST00000474644 RIMS2Q9UQ26 1411 aa23.1■■□□□ 1.29
COL1A1-204ENST00000474644 ANKLE2Q86XL3 938 aa23.1■■□□□ 1.29
COL1A1-204ENST00000474644 SPATA31E1Q6ZUB1 1445 aa23.09■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms