RNA–Protein interactions for RNA: ENST00000474432.1

COL7A1-209, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 728 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-209ENST00000474432 PTPRTO14522 1441 aa29.14■■■□□ 2.26
COL7A1-209ENST00000474432 CAMSAP1Q5T5Y3 1602 aa29.14■■■□□ 2.26
COL7A1-209ENST00000474432 RNF17Q9BXT8 1623 aaKnown RBP29.14■■■□□ 2.26
COL7A1-209ENST00000474432 DMRT2Q9Y5R5 561 aa29.14■■■□□ 2.26
COL7A1-209ENST00000474432 ABCC5O15440 1437 aa29.13■■■□□ 2.25
COL7A1-209ENST00000474432 FGD6Q6ZV73 1430 aa29.12■■■□□ 2.25
COL7A1-209ENST00000474432 CROCC2H7BZ55 1655 aa29.12■■■□□ 2.25
COL7A1-209ENST00000474432 TCOF1Q13428 1488 aaKnown RBP29.12■■■□□ 2.25
COL7A1-209ENST00000474432 CEP170BQ9Y4F5 1589 aaPredicted RBP29.12■■■□□ 2.25
COL7A1-209ENST00000474432 EIF2AK4Q9P2K8 1649 aaKnown RBP29.1■■■□□ 2.25
COL7A1-209ENST00000474432 FBXO31Q5XUX0 539 aaPredicted RBP29.1■■■□□ 2.25
COL7A1-209ENST00000474432 CERKQ8TCT0 537 aa29.1■■■□□ 2.25
COL7A1-209ENST00000474432 PZPP20742 1482 aa29.1■■■□□ 2.25
COL7A1-209ENST00000474432 MROH1Q8NDA8 1641 aa29.09■■■□□ 2.25
COL7A1-209ENST00000474432 WASHC2CQ9Y4E1 1318 aa29.08■■■□□ 2.25
COL7A1-209ENST00000474432 SHANK2Q9UPX8 1470 aa29.08■■■□□ 2.25
COL7A1-209ENST00000474432 DNMT1P26358 1616 aaKnown RBP29.07■■■□□ 2.24
COL7A1-209ENST00000474432 DUOX2Q9NRD8 1548 aa29.05■■■□□ 2.24
COL7A1-209ENST00000474432 DAPK1P53355 1430 aa29.05■■■□□ 2.24
COL7A1-209ENST00000474432 ABCC3O15438 1527 aa29.04■■■□□ 2.24
COL7A1-209ENST00000474432 A2ML1A8K2U0 1454 aa29.04■■■□□ 2.24
COL7A1-209ENST00000474432 PLA2R1Q13018 1463 aa29.04■■■□□ 2.24
COL7A1-209ENST00000474432 NCKAP5LQ9HCH0 1330 aa29.02■■■□□ 2.24
COL7A1-209ENST00000474432 TNRQ92752 1358 aa29.01■■■□□ 2.24
COL7A1-209ENST00000474432 KIF15Q9NS87 1388 aa29.01■■■□□ 2.23
COL7A1-209ENST00000474432 ZC3H13Q5T200 1668 aaKnown RBP29■■■□□ 2.23
COL7A1-209ENST00000474432 LTBP4Q8N2S1 1624 aa28.99■■■□□ 2.23
COL7A1-209ENST00000474432 RRP7BPQ9NSQ0 103 aa28.97■■■□□ 2.23
COL7A1-209ENST00000474432 CEP152O94986 1710 aa28.97■■■□□ 2.23
COL7A1-209ENST00000474432 ERBINQ96RT1 1412 aa28.94■■■□□ 2.22
COL7A1-209ENST00000474432 PKD2Q13563 968 aa28.94■■■□□ 2.22
COL7A1-209ENST00000474432 SPATA31D1Q6ZQQ2 1576 aa28.93■■■□□ 2.22
COL7A1-209ENST00000474432 PRDM15P57071 1507 aaPredicted RBP28.93■■■□□ 2.22
COL7A1-209ENST00000474432 DEPDC5O75140 1603 aa28.91■■■□□ 2.22
COL7A1-209ENST00000474432 CHIC2Q9UKJ5 165 aa28.9■■■□□ 2.22
COL7A1-209ENST00000474432 NLRP1Q9C000 1473 aa28.9■■■□□ 2.22
COL7A1-209ENST00000474432 ERVK-7P63135 1459 aa28.89■■■□□ 2.22
COL7A1-209ENST00000474432 ADGRL2O95490 1459 aa28.87■■■□□ 2.21
COL7A1-209ENST00000474432 NEURL4Q96JN8 1562 aa28.87■■■□□ 2.21
COL7A1-209ENST00000474432 ANKRD30AQ9BXX3 1397 aa28.87■■■□□ 2.21
COL7A1-209ENST00000474432 CFAP65Q6ZU64 1925 aaKnown RBP28.86■■■□□ 2.21
COL7A1-209ENST00000474432 POLR1AO95602 1720 aaPredicted RBP28.86■■■□□ 2.21
COL7A1-209ENST00000474432 ZNF335Q9H4Z2 1342 aaPredicted RBP28.84■■■□□ 2.21
COL7A1-209ENST00000474432 UGGT1Q9NYU2 1555 aa28.84■■■□□ 2.21
COL7A1-209ENST00000474432 ARHGAP31Q2M1Z3 1444 aa28.83■■■□□ 2.21
COL7A1-209ENST00000474432 FAM50AQ14320 339 aaKnown RBP28.82■■■□□ 2.2
COL7A1-209ENST00000474432 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP28.82■■■□□ 2.2
COL7A1-209ENST00000474432 VWDEQ8N2E2 1590 aa28.82■■■□□ 2.2
COL7A1-209ENST00000474432 THEMISQ8N1K5 641 aaPredicted RBP28.79■■■□□ 2.2
COL7A1-209ENST00000474432 GRWD1Q9BQ67 446 aaKnown RBP eCLIP28.78■■■□□ 2.2
COL7A1-209ENST00000474432 IQSEC2Q5JU85 1478 aa28.78■■■□□ 2.2
COL7A1-209ENST00000474432 LMTK2Q8IWU2 1503 aa28.77■■■□□ 2.2
COL7A1-209ENST00000474432 UBR1Q8IWV7 1749 aa28.74■■■□□ 2.19
COL7A1-209ENST00000474432 MED14O60244 1454 aa28.73■■■□□ 2.19
COL7A1-209ENST00000474432 ANKLE2Q86XL3 938 aa28.73■■■□□ 2.19
COL7A1-209ENST00000474432 KANK1Q14678 1352 aa28.71■■■□□ 2.19
COL7A1-209ENST00000474432 ANKRD50Q9ULJ7 1429 aa28.69■■■□□ 2.18
COL7A1-209ENST00000474432 PPARGC1BQ86YN6 1023 aaKnown RBP28.68■■■□□ 2.18
COL7A1-209ENST00000474432 NPHP4O75161 1426 aaPredicted RBP28.68■■■□□ 2.18
COL7A1-209ENST00000474432 EFCAB6Q5THR3 1501 aa28.66■■■□□ 2.18
COL7A1-209ENST00000474432 PIK3C2BO00750 1634 aa28.65■■■□□ 2.18
COL7A1-209ENST00000474432 IQGAP1P46940 1657 aa28.64■■■□□ 2.18
COL7A1-209ENST00000474432 SYNMO15061 1565 aa28.64■■■□□ 2.18
COL7A1-209ENST00000474432 ARHGAP23Q9P227 1491 aa28.64■■■□□ 2.17
COL7A1-209ENST00000474432 NOS1P29475 1434 aa28.62■■■□□ 2.17
COL7A1-209ENST00000474432 SLIT1O75093 1534 aa28.62■■■□□ 2.17
COL7A1-209ENST00000474432 ROCK1Q13464 1354 aa28.62■■■□□ 2.17
COL7A1-209ENST00000474432 UNC13BO14795 1591 aa28.59■■■□□ 2.17
COL7A1-209ENST00000474432 LTKP29376 864 aa28.58■■■□□ 2.17
COL7A1-209ENST00000474432 IDI1Q13907 227 aa28.58■■■□□ 2.17
COL7A1-209ENST00000474432 CPS1P31327 1500 aa28.58■■■□□ 2.17
COL7A1-209ENST00000474432 SCAF11Q99590 1463 aaKnown RBP28.57■■■□□ 2.16
COL7A1-209ENST00000474432 KDM5AP29375 1690 aaKnown RBP28.57■■■□□ 2.16
COL7A1-209ENST00000474432 STRCP1A6NGW2 1772 aa28.57■■■□□ 2.16
COL7A1-209ENST00000474432 TET3O43151 1660 aa28.55■■■□□ 2.16
COL7A1-209ENST00000474432 RPRD2Q5VT52 1461 aaKnown RBP28.53■■■□□ 2.16
COL7A1-209ENST00000474432 TMEM2Q9UHN6 1383 aa28.52■■■□□ 2.16
COL7A1-209ENST00000474432 TXNDC2Q86VQ3 553 aa28.51■■■□□ 2.15
COL7A1-209ENST00000474432 GCC2Q8IWJ2 1684 aa28.51■■■□□ 2.15
COL7A1-209ENST00000474432 UBAP1LF5GYI3 381 aa28.5■■■□□ 2.15
COL7A1-209ENST00000474432 ITGAEP38570 1179 aa28.49■■■□□ 2.15
COL7A1-209ENST00000474432 RRBP1Q9P2E9 1410 aaKnown RBP28.47■■■□□ 2.15
COL7A1-209ENST00000474432 ADGRB3O60242 1522 aa28.47■■■□□ 2.15
COL7A1-209ENST00000474432 IQGAP3Q86VI3 1631 aa28.47■■■□□ 2.15
COL7A1-209ENST00000474432 E9PCH4 1651 aa28.46■■■□□ 2.15
COL7A1-209ENST00000474432 SLC52A1Q9NWF4 448 aa28.45■■■□□ 2.14
COL7A1-209ENST00000474432 ALKQ9UM73 1620 aa28.43■■■□□ 2.14
COL7A1-209ENST00000474432 STAG3Q9UJ98 1225 aa28.43■■■□□ 2.14
COL7A1-209ENST00000474432 LRRC7Q96NW7 1537 aa28.43■■■□□ 2.14
COL7A1-209ENST00000474432 MYO5BQ9ULV0 1848 aa28.42■■■□□ 2.14
COL7A1-209ENST00000474432 EID1Q9Y6B2 187 aa28.42■■■□□ 2.14
COL7A1-209ENST00000474432 TMEM131LA2VDJ0 1609 aa28.38■■■□□ 2.13
COL7A1-209ENST00000474432 NUP155O75694 1391 aa28.37■■■□□ 2.13
COL7A1-209ENST00000474432 ZFYVE9O95405 1425 aa28.35■■■□□ 2.13
COL7A1-209ENST00000474432 XIRP1Q702N8 1843 aaKnown RBP28.34■■■□□ 2.13
COL7A1-209ENST00000474432 TOM1O60784 492 aa28.32■■■□□ 2.12
COL7A1-209ENST00000474432 NAIPQ13075 1403 aa28.29■■■□□ 2.12
COL7A1-209ENST00000474432 PIP4K2BP78356 416 aa28.28■■■□□ 2.12
COL7A1-209ENST00000474432 SLC26A8Q96RN1 970 aa28.28■■■□□ 2.12
COL7A1-209ENST00000474432 RIMS2Q9UQ26 1411 aa28.27■■■□□ 2.12
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms