RNA–Protein interactions for RNA: ENST00000474409.1

CNN3-205, Transcript of calponin 3, humanhuman

TSL 3

Gene CNN3, Length 544 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNN3-205ENST00000474409 RAB3GAP2Q9H2M9 1393 aa12.47□□□□□ -0.41
CNN3-205ENST00000474409 PRDM15P57071 1507 aaPredicted RBP12.47□□□□□ -0.41
CNN3-205ENST00000474409 MROH1Q8NDA8 1641 aa12.46□□□□□ -0.41
CNN3-205ENST00000474409 ATP10AO60312 1499 aa12.46□□□□□ -0.42
CNN3-205ENST00000474409 TET3O43151 1660 aa12.45□□□□□ -0.42
CNN3-205ENST00000474409 CLTCQ00610 1675 aaKnown RBP12.45□□□□□ -0.42
CNN3-205ENST00000474409 CAMSAP1Q5T5Y3 1602 aa12.44□□□□□ -0.42
CNN3-205ENST00000474409 KDM5DQ9BY66 1539 aa12.44□□□□□ -0.42
CNN3-205ENST00000474409 AGLP35573 1532 aa12.43□□□□□ -0.42
CNN3-205ENST00000474409 SPHKAPQ2M3C7 1700 aa12.42□□□□□ -0.42
CNN3-205ENST00000474409 DHX29Q7Z478 1369 aaKnown RBP12.42□□□□□ -0.42
CNN3-205ENST00000474409 E9PCH4 1651 aa12.41□□□□□ -0.42
CNN3-205ENST00000474409 MROH2AA6NES4 1674 aa12.4□□□□□ -0.42
CNN3-205ENST00000474409 FAM135AQ9P2D6 1515 aa12.4□□□□□ -0.42
CNN3-205ENST00000474409 VWDEQ8N2E2 1590 aa12.39□□□□□ -0.43
CNN3-205ENST00000474409 RIMS1Q86UR5 1692 aaKnown RBP12.38□□□□□ -0.43
CNN3-205ENST00000474409 EFCAB6Q5THR3 1501 aa12.37□□□□□ -0.43
CNN3-205ENST00000474409 ACIN1Q9UKV3 1341 aaKnown RBP12.37□□□□□ -0.43
CNN3-205ENST00000474409 PREX1Q8TCU6 1659 aa12.36□□□□□ -0.43
CNN3-205ENST00000474409 PZPP20742 1482 aa12.36□□□□□ -0.43
CNN3-205ENST00000474409 KIF3BO15066 747 aa12.36□□□□□ -0.43
CNN3-205ENST00000474409 TRIM52Q96A61 297 aa12.36□□□□□ -0.43
CNN3-205ENST00000474409 ABCC3O15438 1527 aa12.36□□□□□ -0.43
CNN3-205ENST00000474409 KIF1BO60333 1816 aa12.35□□□□□ -0.43
CNN3-205ENST00000474409 KANK1Q14678 1352 aa12.35□□□□□ -0.43
CNN3-205ENST00000474409 MADDQ8WXG6 1647 aa12.35□□□□□ -0.43
CNN3-205ENST00000474409 C3P01024 1663 aa12.35□□□□□ -0.43
CNN3-205ENST00000474409 HRCP23327 699 aa12.34□□□□□ -0.43
CNN3-205ENST00000474409 ADAMTSL3P82987 1691 aa12.34□□□□□ -0.43
CNN3-205ENST00000474409 NUP155O75694 1391 aa12.33□□□□□ -0.44
CNN3-205ENST00000474409 LMTK2Q8IWU2 1503 aa12.33□□□□□ -0.44
CNN3-205ENST00000474409 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.33□□□□□ -0.442e-10■■□□□ 12.5
CNN3-205ENST00000474409 ARID4BQ4LE39 1312 aaPredicted RBP12.33□□□□□ -0.44
CNN3-205ENST00000474409 MYO5BQ9ULV0 1848 aa12.32□□□□□ -0.44
CNN3-205ENST00000474409 DHX57Q6P158 1386 aaKnown RBP12.31□□□□□ -0.44
CNN3-205ENST00000474409 GGT6Q6P531 493 aa12.3□□□□□ -0.44
CNN3-205ENST00000474409 MLECQ14165 292 aa12.28□□□□□ -0.44
CNN3-205ENST00000474409 SLC4A1APQ9BWU0 796 aaKnown RBP12.28□□□□□ -0.44
CNN3-205ENST00000474409 RPRD2Q5VT52 1461 aaKnown RBP12.27□□□□□ -0.44
CNN3-205ENST00000474409 CLTCL1P53675 1640 aa12.27□□□□□ -0.44
CNN3-205ENST00000474409 CCER1Q8TC90 406 aaPredicted RBP12.27□□□□□ -0.45
CNN3-205ENST00000474409 TRPM2O94759 1503 aa12.27□□□□□ -0.45
CNN3-205ENST00000474409 MPHOSPH9Q99550 1183 aa12.26□□□□□ -0.45
CNN3-205ENST00000474409 CNTLNQ9NXG0 1405 aa12.26□□□□□ -0.45
CNN3-205ENST00000474409 ESF1Q9H501 851 aaKnown RBP12.25□□□□□ -0.45
CNN3-205ENST00000474409 WASHC2CQ9Y4E1 1318 aa12.25□□□□□ -0.45
CNN3-205ENST00000474409 PIK3C2BO00750 1634 aa12.25□□□□□ -0.45
CNN3-205ENST00000474409 SYNMO15061 1565 aa12.24□□□□□ -0.45
CNN3-205ENST00000474409 MYO3AQ8NEV4 1616 aa12.23□□□□□ -0.45
CNN3-205ENST00000474409 SPATA31D1Q6ZQQ2 1576 aa12.23□□□□□ -0.45
CNN3-205ENST00000474409 NPATQ14207 1427 aa12.23□□□□□ -0.45
CNN3-205ENST00000474409 SETD1BQ9UPS6 1966 aaKnown RBP12.23□□□□□ -0.45
CNN3-205ENST00000474409 IFT172Q9UG01 1749 aa12.23□□□□□ -0.45
CNN3-205ENST00000474409 ARHGAP31Q2M1Z3 1444 aa12.22□□□□□ -0.45
CNN3-205ENST00000474409 PKD2Q13563 968 aa12.22□□□□□ -0.45
CNN3-205ENST00000474409 PPP6R1Q9UPN7 881 aa12.22□□□□□ -0.45
CNN3-205ENST00000474409 ERVK-7P63135 1459 aa12.21□□□□□ -0.45
CNN3-205ENST00000474409 ZNF142P52746 1687 aaPredicted RBP12.21□□□□□ -0.45
CNN3-205ENST00000474409 KDM5AP29375 1690 aaKnown RBP12.2□□□□□ -0.46
CNN3-205ENST00000474409 FOXD1Q16676 465 aa12.2□□□□□ -0.46
CNN3-205ENST00000474409 UGGT1Q9NYU2 1555 aa12.2□□□□□ -0.46
CNN3-205ENST00000474409 PPLO60437 1756 aa12.2□□□□□ -0.46
CNN3-205ENST00000474409 CLSPNQ9HAW4 1339 aa12.19□□□□□ -0.46
CNN3-205ENST00000474409 UBR1Q8IWV7 1749 aa12.19□□□□□ -0.46
CNN3-205ENST00000474409 CCDC144AA2RUR9 1427 aa12.19□□□□□ -0.46
CNN3-205ENST00000474409 PTPRTO14522 1441 aa12.17□□□□□ -0.46
CNN3-205ENST00000474409 ANKRD30BQ9BXX2 1392 aa12.17□□□□□ -0.46
CNN3-205ENST00000474409 NOS1P29475 1434 aa12.16□□□□□ -0.46
CNN3-205ENST00000474409 ZMYM3Q14202 1370 aa12.16□□□□□ -0.46
CNN3-205ENST00000474409 ADGRB3O60242 1522 aa12.16□□□□□ -0.46
CNN3-205ENST00000474409 TMEM131LA2VDJ0 1609 aa12.15□□□□□ -0.46
CNN3-205ENST00000474409 PLA2R1Q13018 1463 aa12.15□□□□□ -0.46
CNN3-205ENST00000474409 NEURL4Q96JN8 1562 aa12.15□□□□□ -0.46
CNN3-205ENST00000474409 POLR1AO95602 1720 aaPredicted RBP12.14□□□□□ -0.47
CNN3-205ENST00000474409 PTPRMP28827 1452 aa12.14□□□□□ -0.47
CNN3-205ENST00000474409 PLPPR3Q6T4P5 718 aa12.13□□□□□ -0.47
CNN3-205ENST00000474409 CEP170BQ9Y4F5 1589 aaPredicted RBP12.13□□□□□ -0.47
CNN3-205ENST00000474409 TNRQ92752 1358 aa12.11□□□□□ -0.47
CNN3-205ENST00000474409 TONSLQ96HA7 1378 aa12.11□□□□□ -0.47
CNN3-205ENST00000474409 NLRP1Q9C000 1473 aa12.1□□□□□ -0.47
CNN3-205ENST00000474409 NEUROD1Q13562 356 aa12.1□□□□□ -0.47
CNN3-205ENST00000474409 SIN3AQ96ST3 1273 aa12.1□□□□□ -0.47
CNN3-205ENST00000474409 CEBPAP49715 358 aaPredicted RBP12.08□□□□□ -0.48
CNN3-205ENST00000474409 FBXO31Q5XUX0 539 aaPredicted RBP12.08□□□□□ -0.48
CNN3-205ENST00000474409 LAMC1P11047 1609 aa12.08□□□□□ -0.48
CNN3-205ENST00000474409 NEXMIFQ5QGS0 1516 aa12.07□□□□□ -0.48
CNN3-205ENST00000474409 KIAA1210Q9ULL0 1709 aa12.07□□□□□ -0.48
CNN3-205ENST00000474409 TRPM1Q7Z4N2 1603 aa12.07□□□□□ -0.48
CNN3-205ENST00000474409 IQGAP1P46940 1657 aa12.06□□□□□ -0.48
CNN3-205ENST00000474409 SPATA31E1Q6ZUB1 1445 aa12.06□□□□□ -0.48
CNN3-205ENST00000474409 A2ML1A8K2U0 1454 aa12.06□□□□□ -0.48
CNN3-205ENST00000474409 CHGAP10645 457 aaKnown RBP12.05□□□□□ -0.48
CNN3-205ENST00000474409 SLC52A1Q9NWF4 448 aa12.05□□□□□ -0.48
CNN3-205ENST00000474409 ZEB1P37275 1124 aaPredicted RBP12.04□□□□□ -0.48
CNN3-205ENST00000474409 UHRF1BP1Q6BDS2 1440 aa12.03□□□□□ -0.48
CNN3-205ENST00000474409 MYOM2P54296 1465 aa12.03□□□□□ -0.48
CNN3-205ENST00000474409 STAG3Q9UJ98 1225 aa12.03□□□□□ -0.48
CNN3-205ENST00000474409 SETD1AO15047 1707 aaKnown RBP12.03□□□□□ -0.48
CNN3-205ENST00000474409 KDM4FA0A1W2PPD8 638 aa12.02□□□□□ -0.49
CNN3-205ENST00000474409 IDI1Q13907 227 aa12.01□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 88.1 ms