RNA–Protein interactions for RNA: ENST00000474391.1

COL4A1-203, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 2

Gene COL4A1, Length 581 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-203ENST00000474391 EIF2AK4Q9P2K8 1649 aaKnown RBP16.37■□□□□ 0.21
COL4A1-203ENST00000474391 KDM5DQ9BY66 1539 aa16.37■□□□□ 0.21
COL4A1-203ENST00000474391 DUOX2Q9NRD8 1548 aa16.37■□□□□ 0.21
COL4A1-203ENST00000474391 RNF17Q9BXT8 1623 aaKnown RBP16.37■□□□□ 0.21
COL4A1-203ENST00000474391 KIF15Q9NS87 1388 aa16.35■□□□□ 0.21
COL4A1-203ENST00000474391 WASHC2CQ9Y4E1 1318 aa16.34■□□□□ 0.21
COL4A1-203ENST00000474391 ERBINQ96RT1 1412 aa16.33■□□□□ 0.2
COL4A1-203ENST00000474391 MROH1Q8NDA8 1641 aa16.33■□□□□ 0.2
COL4A1-203ENST00000474391 PZPP20742 1482 aa16.32■□□□□ 0.2
COL4A1-203ENST00000474391 STRCQ7RTU9 1775 aa16.31■□□□□ 0.2
COL4A1-203ENST00000474391 MYO3AQ8NEV4 1616 aa16.31■□□□□ 0.2
COL4A1-203ENST00000474391 ABCC3O15438 1527 aa16.3■□□□□ 0.2
COL4A1-203ENST00000474391 ADGRL2O95490 1459 aa16.3■□□□□ 0.2
COL4A1-203ENST00000474391 NCOA1Q15788 1441 aa16.3■□□□□ 0.2
COL4A1-203ENST00000474391 ANKRD30AQ9BXX3 1397 aa16.3■□□□□ 0.2
COL4A1-203ENST00000474391 RRP7BPQ9NSQ0 103 aa16.3■□□□□ 0.2
COL4A1-203ENST00000474391 ZNF142P52746 1687 aaPredicted RBP16.3■□□□□ 0.2
COL4A1-203ENST00000474391 ZC3H13Q5T200 1668 aaKnown RBP16.3■□□□□ 0.2
COL4A1-203ENST00000474391 FAM50AQ14320 339 aaKnown RBP16.28■□□□□ 0.2
COL4A1-203ENST00000474391 FBXO31Q5XUX0 539 aaPredicted RBP16.28■□□□□ 0.2
COL4A1-203ENST00000474391 DMRT2Q9Y5R5 561 aa16.28■□□□□ 0.2
COL4A1-203ENST00000474391 CEP170BQ9Y4F5 1589 aaPredicted RBP16.28■□□□□ 0.2
COL4A1-203ENST00000474391 PRDM15P57071 1507 aaPredicted RBP16.28■□□□□ 0.2
COL4A1-203ENST00000474391 CHIC2Q9UKJ5 165 aa16.27■□□□□ 0.2
COL4A1-203ENST00000474391 DEPDC5O75140 1603 aa16.27■□□□□ 0.19
COL4A1-203ENST00000474391 CAMSAP1Q5T5Y3 1602 aa16.26■□□□□ 0.19
COL4A1-203ENST00000474391 TNRQ92752 1358 aa16.26■□□□□ 0.19
COL4A1-203ENST00000474391 A2ML1A8K2U0 1454 aa16.25■□□□□ 0.19
COL4A1-203ENST00000474391 PTPRTO14522 1441 aa16.25■□□□□ 0.19
COL4A1-203ENST00000474391 PLA2R1Q13018 1463 aa16.24■□□□□ 0.19
COL4A1-203ENST00000474391 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.24■□□□□ 0.19
COL4A1-203ENST00000474391 ILDR1Q86SU0 546 aaPredicted RBP16.23■□□□□ 0.19
COL4A1-203ENST00000474391 SPATA31D1Q6ZQQ2 1576 aa16.22■□□□□ 0.19
COL4A1-203ENST00000474391 ARHGAP31Q2M1Z3 1444 aa16.22■□□□□ 0.19
COL4A1-203ENST00000474391 NLRP1Q9C000 1473 aa16.22■□□□□ 0.19
COL4A1-203ENST00000474391 VWDEQ8N2E2 1590 aa16.21■□□□□ 0.19
COL4A1-203ENST00000474391 PPARGC1BQ86YN6 1023 aaKnown RBP16.21■□□□□ 0.19
COL4A1-203ENST00000474391 CEP152O94986 1710 aa16.21■□□□□ 0.19
COL4A1-203ENST00000474391 ERVK-7P63135 1459 aa16.21■□□□□ 0.19
COL4A1-203ENST00000474391 ROCK1Q13464 1354 aa16.2■□□□□ 0.18
COL4A1-203ENST00000474391 ANKRD50Q9ULJ7 1429 aa16.19■□□□□ 0.18
COL4A1-203ENST00000474391 LMTK2Q8IWU2 1503 aa16.19■□□□□ 0.18
COL4A1-203ENST00000474391 PKD2Q13563 968 aa16.19■□□□□ 0.18
COL4A1-203ENST00000474391 KANK1Q14678 1352 aa16.18■□□□□ 0.18
COL4A1-203ENST00000474391 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.17■□□□□ 0.18
COL4A1-203ENST00000474391 NCKAP5LQ9HCH0 1330 aa16.17■□□□□ 0.18
COL4A1-203ENST00000474391 FBXO41Q8TF61 875 aa16.16■□□□□ 0.18
COL4A1-203ENST00000474391 RRBP1Q9P2E9 1410 aaKnown RBP16.16■□□□□ 0.18
COL4A1-203ENST00000474391 UGGT1Q9NYU2 1555 aa16.16■□□□□ 0.18
COL4A1-203ENST00000474391 CERKQ8TCT0 537 aa16.15■□□□□ 0.18
COL4A1-203ENST00000474391 THEMISQ8N1K5 641 aaPredicted RBP16.14■□□□□ 0.17
COL4A1-203ENST00000474391 EFCAB6Q5THR3 1501 aa16.13■□□□□ 0.17
COL4A1-203ENST00000474391 LTBP4Q8N2S1 1624 aa16.12■□□□□ 0.17
COL4A1-203ENST00000474391 UNC13BO14795 1591 aa16.11■□□□□ 0.17
COL4A1-203ENST00000474391 NEURL4Q96JN8 1562 aa16.11■□□□□ 0.17
COL4A1-203ENST00000474391 POLR1AO95602 1720 aaPredicted RBP16.1■□□□□ 0.17
COL4A1-203ENST00000474391 ANKLE2Q86XL3 938 aa16.09■□□□□ 0.17
COL4A1-203ENST00000474391 NOS1P29475 1434 aa16.09■□□□□ 0.17
COL4A1-203ENST00000474391 MED14O60244 1454 aa16.09■□□□□ 0.17
COL4A1-203ENST00000474391 RPRD2Q5VT52 1461 aaKnown RBP16.09■□□□□ 0.17
COL4A1-203ENST00000474391 UBR1Q8IWV7 1749 aa16.08■□□□□ 0.17
COL4A1-203ENST00000474391 ITGAEP38570 1179 aa16.08■□□□□ 0.16
COL4A1-203ENST00000474391 TET3O43151 1660 aa16.07■□□□□ 0.16
COL4A1-203ENST00000474391 CFAP65Q6ZU64 1925 aaKnown RBP16.07■□□□□ 0.16
COL4A1-203ENST00000474391 SYNMO15061 1565 aa16.06■□□□□ 0.16
COL4A1-203ENST00000474391 IQSEC2Q5JU85 1478 aa16.05■□□□□ 0.16
COL4A1-203ENST00000474391 ARHGAP23Q9P227 1491 aa16.05■□□□□ 0.16
COL4A1-203ENST00000474391 ZNF335Q9H4Z2 1342 aaPredicted RBP16.05■□□□□ 0.16
COL4A1-203ENST00000474391 KDM5AP29375 1690 aaKnown RBP16.05■□□□□ 0.16
COL4A1-203ENST00000474391 PIK3C2BO00750 1634 aa16.05■□□□□ 0.16
COL4A1-203ENST00000474391 SLIT1O75093 1534 aa16.04■□□□□ 0.16
COL4A1-203ENST00000474391 IQGAP3Q86VI3 1631 aa16.04■□□□□ 0.16
COL4A1-203ENST00000474391 NPHP4O75161 1426 aaPredicted RBP16.03■□□□□ 0.16
COL4A1-203ENST00000474391 GCC2Q8IWJ2 1684 aa16.03■□□□□ 0.16
COL4A1-203ENST00000474391 IDI1Q13907 227 aa16.03■□□□□ 0.16
COL4A1-203ENST00000474391 SLC52A1Q9NWF4 448 aa16.02■□□□□ 0.16
COL4A1-203ENST00000474391 SCAF11Q99590 1463 aaKnown RBP16.01■□□□□ 0.15
COL4A1-203ENST00000474391 NAIPQ13075 1403 aa16.01■□□□□ 0.15
COL4A1-203ENST00000474391 NUP155O75694 1391 aa16■□□□□ 0.15
COL4A1-203ENST00000474391 TMEM2Q9UHN6 1383 aa16■□□□□ 0.15
COL4A1-203ENST00000474391 IQGAP1P46940 1657 aa16■□□□□ 0.15
COL4A1-203ENST00000474391 E9PCH4 1651 aa15.99■□□□□ 0.15
COL4A1-203ENST00000474391 LTKP29376 864 aa15.99■□□□□ 0.15
COL4A1-203ENST00000474391 ADGRB3O60242 1522 aa15.99■□□□□ 0.15
COL4A1-203ENST00000474391 HFM1A2PYH4 1435 aa15.98■□□□□ 0.15
COL4A1-203ENST00000474391 TXNDC2Q86VQ3 553 aa15.97■□□□□ 0.15
COL4A1-203ENST00000474391 CPS1P31327 1500 aa15.96■□□□□ 0.15
COL4A1-203ENST00000474391 STAG3Q9UJ98 1225 aa15.96■□□□□ 0.15
COL4A1-203ENST00000474391 EID1Q9Y6B2 187 aa15.96■□□□□ 0.15
COL4A1-203ENST00000474391 TMEM131LA2VDJ0 1609 aa15.93■□□□□ 0.14
COL4A1-203ENST00000474391 ZFYVE9O95405 1425 aa15.91■□□□□ 0.14
COL4A1-203ENST00000474391 STRCP1A6NGW2 1772 aa15.89■□□□□ 0.13
COL4A1-203ENST00000474391 RIMS2Q9UQ26 1411 aa15.87■□□□□ 0.13
COL4A1-203ENST00000474391 SPHKAPQ2M3C7 1700 aa15.87■□□□□ 0.13
COL4A1-203ENST00000474391 MYO5BQ9ULV0 1848 aa15.87■□□□□ 0.13
COL4A1-203ENST00000474391 LRRC7Q96NW7 1537 aa15.86■□□□□ 0.13
COL4A1-203ENST00000474391 UBAP1LF5GYI3 381 aa15.85■□□□□ 0.13
COL4A1-203ENST00000474391 HDGFP51858 240 aaKnown RBP15.85■□□□□ 0.13
COL4A1-203ENST00000474391 PLEKHG1Q9ULL1 1385 aa15.85■□□□□ 0.13
COL4A1-203ENST00000474391 TRPM2O94759 1503 aa15.84■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms