RNA–Protein interactions for RNA: ENST00000474056.5

UPF3A-203, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 748 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-203ENST00000474056 KDM5DQ9BY66 1539 aa27.91■■■□□ 2.06
UPF3A-203ENST00000474056 FAM135AQ9P2D6 1515 aa27.9■■■□□ 2.06
UPF3A-203ENST00000474056 STRCQ7RTU9 1775 aa27.9■■■□□ 2.06
UPF3A-203ENST00000474056 PTPRKQ15262 1439 aa27.89■■■□□ 2.06
UPF3A-203ENST00000474056 MYO3AQ8NEV4 1616 aa27.89■■■□□ 2.05
UPF3A-203ENST00000474056 DUOX2Q9NRD8 1548 aa27.87■■■□□ 2.05
UPF3A-203ENST00000474056 ZNF142P52746 1687 aaPredicted RBP27.85■■■□□ 2.05
UPF3A-203ENST00000474056 MROH1Q8NDA8 1641 aa27.85■■■□□ 2.05
UPF3A-203ENST00000474056 KIF15Q9NS87 1388 aa27.83■■■□□ 2.05
UPF3A-203ENST00000474056 ZC3H13Q5T200 1668 aaKnown RBP27.82■■■□□ 2.04
UPF3A-203ENST00000474056 CEP152O94986 1710 aa27.81■■■□□ 2.04
UPF3A-203ENST00000474056 WASHC2CQ9Y4E1 1318 aa27.8■■■□□ 2.04
UPF3A-203ENST00000474056 PZPP20742 1482 aa27.79■■■□□ 2.04
UPF3A-203ENST00000474056 CEP170BQ9Y4F5 1589 aaPredicted RBP27.78■■■□□ 2.04
UPF3A-203ENST00000474056 ABCC3O15438 1527 aa27.78■■■□□ 2.04
UPF3A-203ENST00000474056 RRP7BPQ9NSQ0 103 aa27.78■■■□□ 2.04
UPF3A-203ENST00000474056 ERBINQ96RT1 1412 aa27.77■■■□□ 2.04
UPF3A-203ENST00000474056 FAM50AQ14320 339 aaKnown RBP27.77■■■□□ 2.04
UPF3A-203ENST00000474056 CHIC2Q9UKJ5 165 aa27.77■■■□□ 2.04
UPF3A-203ENST00000474056 CAMSAP1Q5T5Y3 1602 aa27.76■■■□□ 2.03
UPF3A-203ENST00000474056 CFAP65Q6ZU64 1925 aaKnown RBP27.75■■■□□ 2.03
UPF3A-203ENST00000474056 ANKRD30AQ9BXX3 1397 aa27.73■■■□□ 2.03
UPF3A-203ENST00000474056 PRDM15P57071 1507 aaPredicted RBP27.73■■■□□ 2.03
UPF3A-203ENST00000474056 ADGRL2O95490 1459 aa27.73■■■□□ 2.03
UPF3A-203ENST00000474056 FBXO31Q5XUX0 539 aaPredicted RBP27.73■■■□□ 2.03
UPF3A-203ENST00000474056 PPARGC1BQ86YN6 1023 aaKnown RBP27.73■■■□□ 2.03
UPF3A-203ENST00000474056 DEPDC5O75140 1603 aa27.73■■■□□ 2.03
UPF3A-203ENST00000474056 NCOA1Q15788 1441 aa27.73■■■□□ 2.03
UPF3A-203ENST00000474056 ILDR1Q86SU0 546 aaPredicted RBP27.7■■■□□ 2.02
UPF3A-203ENST00000474056 TNRQ92752 1358 aa27.7■■■□□ 2.02
UPF3A-203ENST00000474056 A2ML1A8K2U0 1454 aa27.69■■■□□ 2.02
UPF3A-203ENST00000474056 SPATA31D1Q6ZQQ2 1576 aa27.65■■■□□ 2.02
UPF3A-203ENST00000474056 DMRT2Q9Y5R5 561 aa27.65■■■□□ 2.02
UPF3A-203ENST00000474056 PTPRTO14522 1441 aa27.65■■■□□ 2.02
UPF3A-203ENST00000474056 PLA2R1Q13018 1463 aa27.64■■■□□ 2.01
UPF3A-203ENST00000474056 ERVK-7P63135 1459 aa27.62■■■□□ 2.01
UPF3A-203ENST00000474056 GRWD1Q9BQ67 446 aaKnown RBP eCLIP27.6■■■□□ 2.018e-9■□□□□ 9.1
UPF3A-203ENST00000474056 VWDEQ8N2E2 1590 aa27.6■■■□□ 2.01
UPF3A-203ENST00000474056 NLRP1Q9C000 1473 aa27.59■■■□□ 2.01
UPF3A-203ENST00000474056 POLR1AO95602 1720 aaPredicted RBP27.58■■■□□ 2.01
UPF3A-203ENST00000474056 NCKAP5LQ9HCH0 1330 aa27.58■■■□□ 2.01
UPF3A-203ENST00000474056 KANK1Q14678 1352 aa27.56■■■□□ 2
UPF3A-203ENST00000474056 ARHGAP31Q2M1Z3 1444 aa27.56■■■□□ 2
UPF3A-203ENST00000474056 ANKRD50Q9ULJ7 1429 aa27.56■■■□□ 2
UPF3A-203ENST00000474056 UGGT1Q9NYU2 1555 aa27.56■■■□□ 2
UPF3A-203ENST00000474056 LMTK2Q8IWU2 1503 aa27.55■■■□□ 2
UPF3A-203ENST00000474056 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP27.53■■■□□ 2
UPF3A-203ENST00000474056 PKD2Q13563 968 aa27.53■■■□□ 2
UPF3A-203ENST00000474056 FBXO41Q8TF61 875 aa27.51■■□□□ 1.99
UPF3A-203ENST00000474056 ROCK1Q13464 1354 aa27.5■■□□□ 1.99
UPF3A-203ENST00000474056 CERKQ8TCT0 537 aa27.5■■□□□ 1.99
UPF3A-203ENST00000474056 NEURL4Q96JN8 1562 aa27.5■■□□□ 1.99
UPF3A-203ENST00000474056 ITGAEP38570 1179 aa27.49■■□□□ 1.99
UPF3A-203ENST00000474056 UBR1Q8IWV7 1749 aa27.49■■□□□ 1.99
UPF3A-203ENST00000474056 UNC13BO14795 1591 aa27.48■■□□□ 1.99
UPF3A-203ENST00000474056 EFCAB6Q5THR3 1501 aa27.48■■□□□ 1.99
UPF3A-203ENST00000474056 RRBP1Q9P2E9 1410 aaKnown RBP27.48■■□□□ 1.99
UPF3A-203ENST00000474056 LTBP4Q8N2S1 1624 aa27.48■■□□□ 1.99
UPF3A-203ENST00000474056 THEMISQ8N1K5 641 aaPredicted RBP27.44■■□□□ 1.98
UPF3A-203ENST00000474056 TET3O43151 1660 aa27.43■■□□□ 1.98
UPF3A-203ENST00000474056 PIK3C2BO00750 1634 aa27.42■■□□□ 1.98
UPF3A-203ENST00000474056 GCC2Q8IWJ2 1684 aa27.42■■□□□ 1.98
UPF3A-203ENST00000474056 SYNMO15061 1565 aa27.41■■□□□ 1.98
UPF3A-203ENST00000474056 ANKLE2Q86XL3 938 aa27.38■■□□□ 1.97
UPF3A-203ENST00000474056 ZNF335Q9H4Z2 1342 aaPredicted RBP27.38■■□□□ 1.97
UPF3A-203ENST00000474056 NOS1P29475 1434 aa27.37■■□□□ 1.97
UPF3A-203ENST00000474056 IQGAP3Q86VI3 1631 aa27.37■■□□□ 1.97
UPF3A-203ENST00000474056 IQGAP1P46940 1657 aa27.36■■□□□ 1.97
UPF3A-203ENST00000474056 MED14O60244 1454 aa27.35■■□□□ 1.97
UPF3A-203ENST00000474056 E9PCH4 1651 aa27.34■■□□□ 1.97
UPF3A-203ENST00000474056 RPRD2Q5VT52 1461 aaKnown RBP27.34■■□□□ 1.97
UPF3A-203ENST00000474056 KDM5AP29375 1690 aaKnown RBP27.33■■□□□ 1.97
UPF3A-203ENST00000474056 NPHP4O75161 1426 aaPredicted RBP27.33■■□□□ 1.97
UPF3A-203ENST00000474056 ARHGAP23Q9P227 1491 aa27.32■■□□□ 1.96
UPF3A-203ENST00000474056 SLIT1O75093 1534 aa27.31■■□□□ 1.96
UPF3A-203ENST00000474056 IDI1Q13907 227 aa27.29■■□□□ 1.96
UPF3A-203ENST00000474056 IQSEC2Q5JU85 1478 aa27.29■■□□□ 1.96
UPF3A-203ENST00000474056 MYO5BQ9ULV0 1848 aa27.29■■□□□ 1.96
UPF3A-203ENST00000474056 ADGRB3O60242 1522 aa27.27■■□□□ 1.96
UPF3A-203ENST00000474056 SCAF11Q99590 1463 aaKnown RBP27.27■■□□□ 1.96
UPF3A-203ENST00000474056 NUP155O75694 1391 aa27.25■■□□□ 1.95
UPF3A-203ENST00000474056 STAG3Q9UJ98 1225 aa27.24■■□□□ 1.95
UPF3A-203ENST00000474056 NAIPQ13075 1403 aa27.24■■□□□ 1.95
UPF3A-203ENST00000474056 LTKP29376 864 aa27.23■■□□□ 1.95
UPF3A-203ENST00000474056 TMEM2Q9UHN6 1383 aa27.22■■□□□ 1.95
UPF3A-203ENST00000474056 STRCP1A6NGW2 1772 aa27.22■■□□□ 1.95
UPF3A-203ENST00000474056 SLC52A1Q9NWF4 448 aa27.21■■□□□ 1.95
UPF3A-203ENST00000474056 TXNDC2Q86VQ3 553 aa27.2■■□□□ 1.94
UPF3A-203ENST00000474056 CPS1P31327 1500 aa27.19■■□□□ 1.94
UPF3A-203ENST00000474056 TMEM131LA2VDJ0 1609 aa27.17■■□□□ 1.94
UPF3A-203ENST00000474056 EID1Q9Y6B2 187 aa27.16■■□□□ 1.94
UPF3A-203ENST00000474056 SPHKAPQ2M3C7 1700 aa27.16■■□□□ 1.94
UPF3A-203ENST00000474056 HFM1A2PYH4 1435 aa27.16■■□□□ 1.94
UPF3A-203ENST00000474056 ZFYVE9O95405 1425 aa27.08■■□□□ 1.93
UPF3A-203ENST00000474056 CHGAP10645 457 aaKnown RBP27.05■■□□□ 1.92
UPF3A-203ENST00000474056 RIMS2Q9UQ26 1411 aa27.05■■□□□ 1.92
UPF3A-203ENST00000474056 UBAP1LF5GYI3 381 aa27.04■■□□□ 1.92
UPF3A-203ENST00000474056 LRRC7Q96NW7 1537 aa27.03■■□□□ 1.92
UPF3A-203ENST00000474056 XIRP1Q702N8 1843 aaKnown RBP27.02■■□□□ 1.92
UPF3A-203ENST00000474056 CLTCL1P53675 1640 aa27.01■■□□□ 1.91
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms