RNA–Protein interactions for RNA: ENST00000474025.1

SNRNP40-204, Transcript of small nuclear ribonucleoprotein U5 subunit 40, humanhuman

TSL 3

Gene SNRNP40, Length 581 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40-204ENST00000474025 SPAG9O60271 1321 aaKnown RBP8.45□□□□□ -1.06
SNRNP40-204ENST00000474025 TCOF1Q13428 1488 aaKnown RBP8.45□□□□□ -1.06
SNRNP40-204ENST00000474025 ATP7AQ04656 1500 aa8.44□□□□□ -1.06
SNRNP40-204ENST00000474025 ZNF335Q9H4Z2 1342 aaPredicted RBP8.44□□□□□ -1.06
SNRNP40-204ENST00000474025 NCKAP5LQ9HCH0 1330 aa8.44□□□□□ -1.06
SNRNP40-204ENST00000474025 PTPRKQ15262 1439 aa8.44□□□□□ -1.06
SNRNP40-204ENST00000474025 KIAA1107Q9UPP5 1409 aa8.44□□□□□ -1.06
SNRNP40-204ENST00000474025 CEP170BQ9Y4F5 1589 aaPredicted RBP8.44□□□□□ -1.06
SNRNP40-204ENST00000474025 CLTCQ00610 1675 aaKnown RBP8.43□□□□□ -1.06
SNRNP40-204ENST00000474025 SUPT6HQ7KZ85 1726 aaKnown RBP8.43□□□□□ -1.06
SNRNP40-204ENST00000474025 HNRNPMP52272 730 aaKnown RBP eCLIP8.43□□□□□ -1.06
SNRNP40-204ENST00000474025 ZNF777Q9ULD5 760 aaPredicted RBP8.43□□□□□ -1.06
SNRNP40-204ENST00000474025 A2MP01023 1474 aa8.43□□□□□ -1.06
SNRNP40-204ENST00000474025 PLEKHH2Q8IVE3 1493 aa8.43□□□□□ -1.06
SNRNP40-204ENST00000474025 UBAP1LF5GYI3 381 aa8.42□□□□□ -1.06
SNRNP40-204ENST00000474025 PKD2Q13563 968 aa8.42□□□□□ -1.06
SNRNP40-204ENST00000474025 ABCB7O75027 752 aa8.41□□□□□ -1.06
SNRNP40-204ENST00000474025 FOXD4L1Q9NU39 408 aa8.41□□□□□ -1.06
SNRNP40-204ENST00000474025 CFDP1Q9UEE9 299 aaPredicted RBP8.4□□□□□ -1.06
SNRNP40-204ENST00000474025 A2ML1A8K2U0 1454 aa8.39□□□□□ -1.07
SNRNP40-204ENST00000474025 CCNB3Q8WWL7 1395 aa8.39□□□□□ -1.07
SNRNP40-204ENST00000474025 GGT6Q6P531 493 aa8.39□□□□□ -1.07
SNRNP40-204ENST00000474025 ADGBQ8N7X0 1667 aa8.39□□□□□ -1.07
SNRNP40-204ENST00000474025 MBD5Q9P267 1494 aa8.38□□□□□ -1.07
SNRNP40-204ENST00000474025 DNMT1P26358 1616 aaKnown RBP8.38□□□□□ -1.07
SNRNP40-204ENST00000474025 MTUS2Q5JR59 1369 aa8.37□□□□□ -1.07
SNRNP40-204ENST00000474025 ZNF644Q9H582 1327 aaPredicted RBP8.37□□□□□ -1.07
SNRNP40-204ENST00000474025 TIAM1Q13009 1591 aa8.37□□□□□ -1.07
SNRNP40-204ENST00000474025 NEURL4Q96JN8 1562 aa8.37□□□□□ -1.07
SNRNP40-204ENST00000474025 RTEL1-TNFRSF6BF6WH68 1400 aa8.37□□□□□ -1.07
SNRNP40-204ENST00000474025 DHX29Q7Z478 1369 aaKnown RBP8.35□□□□□ -1.07
SNRNP40-204ENST00000474025 TNRQ92752 1358 aa8.35□□□□□ -1.07
SNRNP40-204ENST00000474025 MED1Q15648 1581 aaPredicted RBP8.35□□□□□ -1.07
SNRNP40-204ENST00000474025 CPS1P31327 1500 aa8.35□□□□□ -1.07
SNRNP40-204ENST00000474025 EHBP1L1Q8N3D4 1523 aa8.35□□□□□ -1.07
SNRNP40-204ENST00000474025 FAM135AQ9P2D6 1515 aa8.35□□□□□ -1.07
SNRNP40-204ENST00000474025 POLR1AO95602 1720 aaPredicted RBP8.35□□□□□ -1.07
SNRNP40-204ENST00000474025 PZPP20742 1482 aa8.35□□□□□ -1.07
SNRNP40-204ENST00000474025 SHANK2Q9UPX8 1470 aa8.35□□□□□ -1.07
SNRNP40-204ENST00000474025 HSPA1LP34931 641 aa8.35□□□□□ -1.07
SNRNP40-204ENST00000474025 KDM5DQ9BY66 1539 aa8.34□□□□□ -1.07
SNRNP40-204ENST00000474025 CEP162Q5TB80 1403 aa8.34□□□□□ -1.07
SNRNP40-204ENST00000474025 CCDC141Q6ZP82 1450 aa8.33□□□□□ -1.08
SNRNP40-204ENST00000474025 PIP4K2BP78356 416 aa8.33□□□□□ -1.08
SNRNP40-204ENST00000474025 FBXO31Q5XUX0 539 aaPredicted RBP8.33□□□□□ -1.08
SNRNP40-204ENST00000474025 VWDEQ8N2E2 1590 aa8.33□□□□□ -1.08
SNRNP40-204ENST00000474025 ALKQ9UM73 1620 aa8.32□□□□□ -1.08
SNRNP40-204ENST00000474025 KIF3BO15066 747 aa8.32□□□□□ -1.08
SNRNP40-204ENST00000474025 TOM1O60784 492 aa8.32□□□□□ -1.08
SNRNP40-204ENST00000474025 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP8.32□□□□□ -1.08
SNRNP40-204ENST00000474025 MED14O60244 1454 aa8.32□□□□□ -1.08
SNRNP40-204ENST00000474025 NLRP1Q9C000 1473 aa8.32□□□□□ -1.08
SNRNP40-204ENST00000474025 MIA2Q96PC5 1412 aa8.31□□□□□ -1.08
SNRNP40-204ENST00000474025 ANKLE2Q86XL3 938 aa8.31□□□□□ -1.08
SNRNP40-204ENST00000474025 DEPDC5O75140 1603 aa8.31□□□□□ -1.08
SNRNP40-204ENST00000474025 CAMSAP2Q08AD1 1489 aa8.31□□□□□ -1.08
SNRNP40-204ENST00000474025 UGGT1Q9NYU2 1555 aa8.31□□□□□ -1.08
SNRNP40-204ENST00000474025 NPHP4O75161 1426 aaPredicted RBP8.3□□□□□ -1.08
SNRNP40-204ENST00000474025 NCOA2Q15596 1464 aa8.3□□□□□ -1.08
SNRNP40-204ENST00000474025 WASHC2CQ9Y4E1 1318 aa8.29□□□□□ -1.08
SNRNP40-204ENST00000474025 POLA2Q14181 598 aa8.29□□□□□ -1.08
SNRNP40-204ENST00000474025 THEMISQ8N1K5 641 aaPredicted RBP8.29□□□□□ -1.08
SNRNP40-204ENST00000474025 IQGAP1P46940 1657 aa8.28□□□□□ -1.08
SNRNP40-204ENST00000474025 ARHGEF5Q12774 1597 aa8.28□□□□□ -1.08
SNRNP40-204ENST00000474025 SRCAPQ6ZRS2 3230 aa8.28□□□□□ -1.08
SNRNP40-204ENST00000474025 RNF17Q9BXT8 1623 aaKnown RBP8.28□□□□□ -1.08
SNRNP40-204ENST00000474025 ABCC3O15438 1527 aa8.28□□□□□ -1.08
SNRNP40-204ENST00000474025 LRRC7Q96NW7 1537 aa8.28□□□□□ -1.08
SNRNP40-204ENST00000474025 RSPH4AQ5TD94 716 aa8.27□□□□□ -1.09
SNRNP40-204ENST00000474025 STRCP1A6NGW2 1772 aa8.27□□□□□ -1.09
SNRNP40-204ENST00000474025 SYNMO15061 1565 aa8.27□□□□□ -1.09
SNRNP40-204ENST00000474025 ERVK-7P63135 1459 aa8.26□□□□□ -1.09
SNRNP40-204ENST00000474025 ZBTB22O15209 634 aa8.26□□□□□ -1.09
SNRNP40-204ENST00000474025 ZC3H13Q5T200 1668 aaKnown RBP8.26□□□□□ -1.09
SNRNP40-204ENST00000474025 ATF5Q9Y2D1 282 aaPredicted RBP8.25□□□□□ -1.09
SNRNP40-204ENST00000474025 MAST1Q9Y2H9 1570 aa8.25□□□□□ -1.09
SNRNP40-204ENST00000474025 MROH1Q8NDA8 1641 aa8.25□□□□□ -1.09
SNRNP40-204ENST00000474025 TSPY4P0CV99 314 aa8.24□□□□□ -1.09
SNRNP40-204ENST00000474025 TSPY10P0CW01 314 aa8.24□□□□□ -1.09
SNRNP40-204ENST00000474025 EIF2AK4Q9P2K8 1649 aaKnown RBP8.24□□□□□ -1.09
SNRNP40-204ENST00000474025 SCAF11Q99590 1463 aaKnown RBP8.24□□□□□ -1.09
SNRNP40-204ENST00000474025 UBR1Q8IWV7 1749 aa8.23□□□□□ -1.09
SNRNP40-204ENST00000474025 RBM42Q9BTD8 480 aaKnown RBP8.23□□□□□ -1.09
SNRNP40-204ENST00000474025 ARHGAP23Q9P227 1491 aa8.23□□□□□ -1.09
SNRNP40-204ENST00000474025 LRRC9Q6ZRR7 1453 aa8.22□□□□□ -1.09
SNRNP40-204ENST00000474025 SLIT1O75093 1534 aa8.22□□□□□ -1.09
SNRNP40-204ENST00000474025 CEP152O94986 1710 aa8.21□□□□□ -1.09
SNRNP40-204ENST00000474025 LTKP29376 864 aa8.21□□□□□ -1.1
SNRNP40-204ENST00000474025 PRDM15P57071 1507 aaPredicted RBP8.2□□□□□ -1.1
SNRNP40-204ENST00000474025 DUOX2Q9NRD8 1548 aa8.2□□□□□ -1.1
SNRNP40-204ENST00000474025 ATXN8OSP0DMR3 200 aa8.2□□□□□ -1.1
SNRNP40-204ENST00000474025 RGS17Q9UGC6 210 aaPredicted RBP8.2□□□□□ -1.1
SNRNP40-204ENST00000474025 ARHGAP31Q2M1Z3 1444 aa8.2□□□□□ -1.1
SNRNP40-204ENST00000474025 XIRP1Q702N8 1843 aaKnown RBP8.19□□□□□ -1.1
SNRNP40-204ENST00000474025 TXNDC2Q86VQ3 553 aa8.18□□□□□ -1.1
SNRNP40-204ENST00000474025 KIF15Q9NS87 1388 aa8.18□□□□□ -1.1
SNRNP40-204ENST00000474025 FAM135BQ49AJ0 1406 aa8.18□□□□□ -1.1
SNRNP40-204ENST00000474025 MYOM3Q5VTT5 1437 aa8.18□□□□□ -1.1
SNRNP40-204ENST00000474025 VPS8Q8N3P4 1428 aa8.18□□□□□ -1.1
SNRNP40-204ENST00000474025 PIK3C2BO00750 1634 aa8.18□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms