RNA–Protein interactions for RNA: ENST00000469529.6

TRAF4-208, Transcript of TNF receptor associated factor 4, humanhuman

TSL 2

Gene TRAF4, Length 788 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-208ENST00000469529 ADAMTSL3P82987 1691 aa18.72■□□□□ 0.59
TRAF4-208ENST00000469529 BCORL1Q5H9F3 1711 aa18.71■□□□□ 0.59
TRAF4-208ENST00000469529 NUP155O75694 1391 aa18.71■□□□□ 0.59
TRAF4-208ENST00000469529 SLC4A1APQ9BWU0 796 aaKnown RBP18.69■□□□□ 0.58
TRAF4-208ENST00000469529 ATP10AO60312 1499 aa18.69■□□□□ 0.58
TRAF4-208ENST00000469529 TIMELESSQ9UNS1 1208 aa18.68■□□□□ 0.58
TRAF4-208ENST00000469529 PZPP20742 1482 aa18.68■□□□□ 0.58
TRAF4-208ENST00000469529 PPP6R1Q9UPN7 881 aa18.67■□□□□ 0.58
TRAF4-208ENST00000469529 KIF3BO15066 747 aa18.66■□□□□ 0.58
TRAF4-208ENST00000469529 EIF2AK4Q9P2K8 1649 aaKnown RBP18.66■□□□□ 0.58
TRAF4-208ENST00000469529 PTPRMP28827 1452 aa18.65■□□□□ 0.58
TRAF4-208ENST00000469529 REREQ9P2R6 1566 aa18.65■□□□□ 0.58
TRAF4-208ENST00000469529 MADDQ8WXG6 1647 aa18.65■□□□□ 0.58
TRAF4-208ENST00000469529 UNC13BO14795 1591 aa18.64■□□□□ 0.58
TRAF4-208ENST00000469529 DIP2CQ9Y2E4 1556 aa18.64■□□□□ 0.58
TRAF4-208ENST00000469529 SIGLEC1Q9BZZ2 1709 aa18.64■□□□□ 0.57
TRAF4-208ENST00000469529 ANKRD30BQ9BXX2 1392 aa18.62■□□□□ 0.57
TRAF4-208ENST00000469529 AGLP35573 1532 aa18.62■□□□□ 0.57
TRAF4-208ENST00000469529 ABCA6Q8N139 1617 aa18.62■□□□□ 0.57
TRAF4-208ENST00000469529 KANK1Q14678 1352 aa18.61■□□□□ 0.57
TRAF4-208ENST00000469529 PKD2Q13563 968 aa18.61■□□□□ 0.57
TRAF4-208ENST00000469529 MLECQ14165 292 aa18.61■□□□□ 0.57
TRAF4-208ENST00000469529 VWDEQ8N2E2 1590 aa18.6■□□□□ 0.57
TRAF4-208ENST00000469529 DEPDC5O75140 1603 aa18.6■□□□□ 0.57
TRAF4-208ENST00000469529 FAM135AQ9P2D6 1515 aa18.59■□□□□ 0.57
TRAF4-208ENST00000469529 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.59■□□□□ 0.572e-6■■□□□ 13.4
TRAF4-208ENST00000469529 RIMS1Q86UR5 1692 aaKnown RBP18.59■□□□□ 0.57
TRAF4-208ENST00000469529 PRDM15P57071 1507 aaPredicted RBP18.57■□□□□ 0.56
TRAF4-208ENST00000469529 LMTK2Q8IWU2 1503 aa18.57■□□□□ 0.56
TRAF4-208ENST00000469529 IQGAP3Q86VI3 1631 aa18.56■□□□□ 0.56
TRAF4-208ENST00000469529 RNF17Q9BXT8 1623 aaKnown RBP18.56■□□□□ 0.56
TRAF4-208ENST00000469529 MROH1Q8NDA8 1641 aa18.53■□□□□ 0.56
TRAF4-208ENST00000469529 FER1L4A9Z1Z3 1794 aa18.53■□□□□ 0.56
TRAF4-208ENST00000469529 GGT6Q6P531 493 aa18.53■□□□□ 0.56
TRAF4-208ENST00000469529 PLPPR3Q6T4P5 718 aa18.53■□□□□ 0.56
TRAF4-208ENST00000469529 SIN3AQ96ST3 1273 aa18.53■□□□□ 0.56
TRAF4-208ENST00000469529 FOXD1Q16676 465 aa18.51■□□□□ 0.55
TRAF4-208ENST00000469529 WASHC2CQ9Y4E1 1318 aa18.5■□□□□ 0.55
TRAF4-208ENST00000469529 PTPRTO14522 1441 aa18.49■□□□□ 0.55
TRAF4-208ENST00000469529 ARHGAP31Q2M1Z3 1444 aa18.49■□□□□ 0.55
TRAF4-208ENST00000469529 PLA2R1Q13018 1463 aa18.48■□□□□ 0.55
TRAF4-208ENST00000469529 RPRD2Q5VT52 1461 aaKnown RBP18.48■□□□□ 0.55
TRAF4-208ENST00000469529 TET3O43151 1660 aa18.45■□□□□ 0.54
TRAF4-208ENST00000469529 NEUROD1Q13562 356 aa18.45■□□□□ 0.54
TRAF4-208ENST00000469529 ABCC3O15438 1527 aa18.44■□□□□ 0.54
TRAF4-208ENST00000469529 LMTK3Q96Q04 1460 aa18.44■□□□□ 0.54
TRAF4-208ENST00000469529 PPP1R15AO75807 674 aaPredicted RBP18.43■□□□□ 0.54
TRAF4-208ENST00000469529 CEBPAP49715 358 aaPredicted RBP18.42■□□□□ 0.54
TRAF4-208ENST00000469529 ESF1Q9H501 851 aaKnown RBP18.42■□□□□ 0.54
TRAF4-208ENST00000469529 EFCAB6Q5THR3 1501 aa18.42■□□□□ 0.54
TRAF4-208ENST00000469529 TONSLQ96HA7 1378 aa18.4■□□□□ 0.54
TRAF4-208ENST00000469529 CCDC144AA2RUR9 1427 aa18.4■□□□□ 0.54
TRAF4-208ENST00000469529 NPATQ14207 1427 aa18.4■□□□□ 0.54
TRAF4-208ENST00000469529 STAC3Q96MF2 364 aa18.39■□□□□ 0.53
TRAF4-208ENST00000469529 NOS1P29475 1434 aa18.39■□□□□ 0.53
TRAF4-208ENST00000469529 ZC3H13Q5T200 1668 aaKnown RBP18.38■□□□□ 0.53
TRAF4-208ENST00000469529 CNTLNQ9NXG0 1405 aa18.38■□□□□ 0.53
TRAF4-208ENST00000469529 L3MBTL2Q969R5 705 aa18.37■□□□□ 0.53
TRAF4-208ENST00000469529 E9PCH4 1651 aa18.37■□□□□ 0.53
TRAF4-208ENST00000469529 TRPM2O94759 1503 aa18.36■□□□□ 0.53
TRAF4-208ENST00000469529 HSPA2P54652 639 aa18.36■□□□□ 0.53
TRAF4-208ENST00000469529 SLC52A1Q9NWF4 448 aa18.36■□□□□ 0.53
TRAF4-208ENST00000469529 C3P01024 1663 aa18.34■□□□□ 0.53
TRAF4-208ENST00000469529 ZMYM3Q14202 1370 aa18.33■□□□□ 0.53
TRAF4-208ENST00000469529 PREX1Q8TCU6 1659 aa18.33■□□□□ 0.52
TRAF4-208ENST00000469529 NEURL4Q96JN8 1562 aa18.33■□□□□ 0.52
TRAF4-208ENST00000469529 SPATA31E1Q6ZUB1 1445 aa18.32■□□□□ 0.52
TRAF4-208ENST00000469529 SETD1BQ9UPS6 1966 aaKnown RBP18.31■□□□□ 0.52
TRAF4-208ENST00000469529 CAMSAP1Q5T5Y3 1602 aa18.31■□□□□ 0.52
TRAF4-208ENST00000469529 UHRF1BP1Q6BDS2 1440 aa18.3■□□□□ 0.52
TRAF4-208ENST00000469529 MROH2AA6NES4 1674 aa18.29■□□□□ 0.52
TRAF4-208ENST00000469529 CEP152O94986 1710 aa18.29■□□□□ 0.52
TRAF4-208ENST00000469529 CLTCQ00610 1675 aaKnown RBP18.27■□□□□ 0.52
TRAF4-208ENST00000469529 SPHKAPQ2M3C7 1700 aa18.26■□□□□ 0.51
TRAF4-208ENST00000469529 RPGRIP1LQ68CZ1 1315 aa18.25■□□□□ 0.51
TRAF4-208ENST00000469529 IDI1Q13907 227 aa18.25■□□□□ 0.51
TRAF4-208ENST00000469529 FBXO31Q5XUX0 539 aaPredicted RBP18.25■□□□□ 0.51
TRAF4-208ENST00000469529 ERVK-7P63135 1459 aa18.25■□□□□ 0.51
TRAF4-208ENST00000469529 SPATA31D1Q6ZQQ2 1576 aa18.24■□□□□ 0.51
TRAF4-208ENST00000469529 DCAF11Q8TEB1 546 aa18.22■□□□□ 0.51
TRAF4-208ENST00000469529 CLTCL1P53675 1640 aa18.21■□□□□ 0.51
TRAF4-208ENST00000469529 RGL3Q3MIN7 710 aa18.21■□□□□ 0.51
TRAF4-208ENST00000469529 ILDR1Q86SU0 546 aaPredicted RBP18.21■□□□□ 0.51
TRAF4-208ENST00000469529 PIK3C2BO00750 1634 aa18.2■□□□□ 0.5
TRAF4-208ENST00000469529 NBPF8Q3BBV2 869 aa18.2■□□□□ 0.5
TRAF4-208ENST00000469529 SYNMO15061 1565 aa18.2■□□□□ 0.5
TRAF4-208ENST00000469529 TNRQ92752 1358 aa18.17■□□□□ 0.5
TRAF4-208ENST00000469529 ADGRB3O60242 1522 aa18.16■□□□□ 0.5
TRAF4-208ENST00000469529 STRCQ7RTU9 1775 aa18.15■□□□□ 0.5
TRAF4-208ENST00000469529 DMRT2Q9Y5R5 561 aa18.15■□□□□ 0.5
TRAF4-208ENST00000469529 UGGT1Q9NYU2 1555 aa18.15■□□□□ 0.5
TRAF4-208ENST00000469529 ZFYVE9O95405 1425 aa18.15■□□□□ 0.5
TRAF4-208ENST00000469529 PRAG1Q86YV5 1406 aa18.14■□□□□ 0.49
TRAF4-208ENST00000469529 MYO3AQ8NEV4 1616 aa18.13■□□□□ 0.49
TRAF4-208ENST00000469529 VGFO15240 615 aaPredicted RBP18.13■□□□□ 0.49
TRAF4-208ENST00000469529 KDM2AQ9Y2K7 1162 aa18.13■□□□□ 0.49
TRAF4-208ENST00000469529 MYOM2P54296 1465 aa18.12■□□□□ 0.49
TRAF4-208ENST00000469529 NLRP1Q9C000 1473 aa18.12■□□□□ 0.49
TRAF4-208ENST00000469529 NRXN1Q9ULB1 1477 aa18.11■□□□□ 0.49
TRAF4-208ENST00000469529 ZNF142P52746 1687 aaPredicted RBP18.1■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms