RNA–Protein interactions for RNA: ENST00000465941.1

HOXA9-203, Transcript of homeobox A9, humanhuman

TSL 1 (best)

Gene HOXA9, Length 657 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA9-203ENST00000465941 CNTLNQ9NXG0 1405 aa27.84■■■□□ 2.05
HOXA9-203ENST00000465941 FER1L4A9Z1Z3 1794 aa27.83■■■□□ 2.05
HOXA9-203ENST00000465941 RIMS1Q86UR5 1692 aaKnown RBP27.81■■■□□ 2.04
HOXA9-203ENST00000465941 RNF17Q9BXT8 1623 aaKnown RBP27.81■■■□□ 2.04
HOXA9-203ENST00000465941 WASHC2CQ9Y4E1 1318 aa27.78■■■□□ 2.04
HOXA9-203ENST00000465941 FAM135AQ9P2D6 1515 aa27.77■■■□□ 2.04
HOXA9-203ENST00000465941 ZMYM3Q14202 1370 aa27.75■■■□□ 2.03
HOXA9-203ENST00000465941 MROH1Q8NDA8 1641 aa27.74■■■□□ 2.03
HOXA9-203ENST00000465941 NAIPQ13075 1403 aa27.74■■■□□ 2.03
HOXA9-203ENST00000465941 KDM5DQ9BY66 1539 aa27.73■■■□□ 2.03
HOXA9-203ENST00000465941 CEBPAP49715 358 aaPredicted RBP27.73■■■□□ 2.03
HOXA9-203ENST00000465941 HFM1A2PYH4 1435 aa27.73■■■□□ 2.03
HOXA9-203ENST00000465941 DEPDC5O75140 1603 aa27.72■■■□□ 2.03
HOXA9-203ENST00000465941 GRWD1Q9BQ67 446 aaKnown RBP eCLIP27.72■■■□□ 2.03
HOXA9-203ENST00000465941 PRDM15P57071 1507 aaPredicted RBP27.72■■■□□ 2.03
HOXA9-203ENST00000465941 MROH2AA6NES4 1674 aa27.71■■■□□ 2.03
HOXA9-203ENST00000465941 CLTCQ00610 1675 aaKnown RBP27.71■■■□□ 2.03
HOXA9-203ENST00000465941 KANK1Q14678 1352 aa27.7■■■□□ 2.02
HOXA9-203ENST00000465941 PLPPR3Q6T4P5 718 aa27.69■■■□□ 2.02
HOXA9-203ENST00000465941 ABCC3O15438 1527 aa27.67■■■□□ 2.02
HOXA9-203ENST00000465941 C3P01024 1663 aa27.65■■■□□ 2.02
HOXA9-203ENST00000465941 ZC3H13Q5T200 1668 aaKnown RBP27.65■■■□□ 2.02
HOXA9-203ENST00000465941 VWDEQ8N2E2 1590 aa27.64■■■□□ 2.01
HOXA9-203ENST00000465941 GCC2Q8IWJ2 1684 aa27.63■■■□□ 2.01
HOXA9-203ENST00000465941 NPATQ14207 1427 aa27.61■■■□□ 2.01
HOXA9-203ENST00000465941 LMTK2Q8IWU2 1503 aa27.61■■■□□ 2.01
HOXA9-203ENST00000465941 UNC13BO14795 1591 aa27.6■■■□□ 2.01
HOXA9-203ENST00000465941 PZPP20742 1482 aa27.59■■■□□ 2.01
HOXA9-203ENST00000465941 ARHGAP31Q2M1Z3 1444 aa27.58■■■□□ 2
HOXA9-203ENST00000465941 NUP155O75694 1391 aa27.57■■■□□ 2
HOXA9-203ENST00000465941 CEP152O94986 1710 aa27.56■■■□□ 2
HOXA9-203ENST00000465941 FBXO31Q5XUX0 539 aaPredicted RBP27.56■■■□□ 2
HOXA9-203ENST00000465941 CAMSAP1Q5T5Y3 1602 aa27.54■■■□□ 2
HOXA9-203ENST00000465941 SETD5Q9C0A6 1442 aa27.54■■■□□ 2
HOXA9-203ENST00000465941 ACIN1Q9UKV3 1341 aaKnown RBP27.5■■□□□ 1.99
HOXA9-203ENST00000465941 IQGAP3Q86VI3 1631 aa27.5■■□□□ 1.99
HOXA9-203ENST00000465941 SETD1BQ9UPS6 1966 aaKnown RBP27.49■■□□□ 1.99
HOXA9-203ENST00000465941 EFCAB6Q5THR3 1501 aa27.48■■□□□ 1.99
HOXA9-203ENST00000465941 TRIM26Q12899 539 aaPredicted RBP27.47■■□□□ 1.99
HOXA9-203ENST00000465941 TRIM52Q96A61 297 aa27.47■■□□□ 1.99
HOXA9-203ENST00000465941 UHRF1BP1Q6BDS2 1440 aa27.47■■□□□ 1.99
HOXA9-203ENST00000465941 TNRQ92752 1358 aa27.47■■□□□ 1.99
HOXA9-203ENST00000465941 LMTK3Q96Q04 1460 aa27.46■■□□□ 1.99
HOXA9-203ENST00000465941 TET3O43151 1660 aa27.46■■□□□ 1.99
HOXA9-203ENST00000465941 ERVK-7P63135 1459 aa27.45■■□□□ 1.99
HOXA9-203ENST00000465941 RPRD2Q5VT52 1461 aaKnown RBP27.45■■□□□ 1.99
HOXA9-203ENST00000465941 SPATA31D1Q6ZQQ2 1576 aa27.45■■□□□ 1.99
HOXA9-203ENST00000465941 PREX1Q8TCU6 1659 aa27.44■■□□□ 1.98
HOXA9-203ENST00000465941 RAB3GAP2Q9H2M9 1393 aa27.44■■□□□ 1.98
HOXA9-203ENST00000465941 HRCP23327 699 aa27.43■■□□□ 1.98
HOXA9-203ENST00000465941 NOS1P29475 1434 aa27.39■■□□□ 1.97
HOXA9-203ENST00000465941 NLRP1Q9C000 1473 aa27.38■■□□□ 1.97
HOXA9-203ENST00000465941 SLC4A1APQ9BWU0 796 aaKnown RBP27.37■■□□□ 1.97
HOXA9-203ENST00000465941 MYO3AQ8NEV4 1616 aa27.36■■□□□ 1.97
HOXA9-203ENST00000465941 E9PCH4 1651 aa27.35■■□□□ 1.97
HOXA9-203ENST00000465941 A2ML1A8K2U0 1454 aa27.34■■□□□ 1.97
HOXA9-203ENST00000465941 HSPA2P54652 639 aa27.34■■□□□ 1.97
HOXA9-203ENST00000465941 MPHOSPH9Q99550 1183 aa27.33■■□□□ 1.97
HOXA9-203ENST00000465941 CFAP65Q6ZU64 1925 aaKnown RBP27.32■■□□□ 1.96
HOXA9-203ENST00000465941 CEP170BQ9Y4F5 1589 aaPredicted RBP27.32■■□□□ 1.96
HOXA9-203ENST00000465941 PKD2Q13563 968 aa27.32■■□□□ 1.96
HOXA9-203ENST00000465941 SLC52A1Q9NWF4 448 aa27.32■■□□□ 1.96
HOXA9-203ENST00000465941 ZNF142P52746 1687 aaPredicted RBP27.3■■□□□ 1.96
HOXA9-203ENST00000465941 IDI1Q13907 227 aa27.3■■□□□ 1.96
HOXA9-203ENST00000465941 SYNMO15061 1565 aa27.29■■□□□ 1.96
HOXA9-203ENST00000465941 PTPRTO14522 1441 aa27.28■■□□□ 1.96
HOXA9-203ENST00000465941 THEMISQ8N1K5 641 aaPredicted RBP27.27■■□□□ 1.96
HOXA9-203ENST00000465941 UGGT1Q9NYU2 1555 aa27.25■■□□□ 1.95
HOXA9-203ENST00000465941 PLA2R1Q13018 1463 aa27.19■■□□□ 1.94
HOXA9-203ENST00000465941 FOXD1Q16676 465 aa27.19■■□□□ 1.94
HOXA9-203ENST00000465941 STAG3Q9UJ98 1225 aa27.19■■□□□ 1.94
HOXA9-203ENST00000465941 PIK3C2BO00750 1634 aa27.19■■□□□ 1.94
HOXA9-203ENST00000465941 SPHKAPQ2M3C7 1700 aa27.17■■□□□ 1.94
HOXA9-203ENST00000465941 UBR1Q8IWV7 1749 aa27.16■■□□□ 1.94
HOXA9-203ENST00000465941 TRPM2O94759 1503 aa27.16■■□□□ 1.94
HOXA9-203ENST00000465941 KDM5AP29375 1690 aaKnown RBP27.15■■□□□ 1.94
HOXA9-203ENST00000465941 ADGRB3O60242 1522 aa27.12■■□□□ 1.93
HOXA9-203ENST00000465941 ANKLE2Q86XL3 938 aa27.12■■□□□ 1.93
HOXA9-203ENST00000465941 DMRT2Q9Y5R5 561 aa27.11■■□□□ 1.93
HOXA9-203ENST00000465941 NCKAP5LQ9HCH0 1330 aa27.11■■□□□ 1.93
HOXA9-203ENST00000465941 STRCQ7RTU9 1775 aa27.1■■□□□ 1.93
HOXA9-203ENST00000465941 TMEM2Q9UHN6 1383 aa27.09■■□□□ 1.93
HOXA9-203ENST00000465941 ARHGAP23Q9P227 1491 aa27.09■■□□□ 1.93
HOXA9-203ENST00000465941 CHGAP10645 457 aaKnown RBP27.09■■□□□ 1.93
HOXA9-203ENST00000465941 SLIT1O75093 1534 aa27.09■■□□□ 1.93
HOXA9-203ENST00000465941 TMEM131LA2VDJ0 1609 aa27.08■■□□□ 1.93
HOXA9-203ENST00000465941 CLTCL1P53675 1640 aa27.07■■□□□ 1.92
HOXA9-203ENST00000465941 PCGF6Q9BYE7 350 aa27.06■■□□□ 1.92
HOXA9-203ENST00000465941 TXNDC2Q86VQ3 553 aa27.05■■□□□ 1.92
HOXA9-203ENST00000465941 EID1Q9Y6B2 187 aa27.05■■□□□ 1.92
HOXA9-203ENST00000465941 LTKP29376 864 aa27.04■■□□□ 1.92
HOXA9-203ENST00000465941 ANKRD30BQ9BXX2 1392 aa27.04■■□□□ 1.92
HOXA9-203ENST00000465941 CCDC144AA2RUR9 1427 aa27.04■■□□□ 1.92
HOXA9-203ENST00000465941 HDGFP51858 240 aaKnown RBP27.03■■□□□ 1.92
HOXA9-203ENST00000465941 MED14O60244 1454 aa27■■□□□ 1.91
HOXA9-203ENST00000465941 SCAF11Q99590 1463 aaKnown RBP27■■□□□ 1.91
HOXA9-203ENST00000465941 ZFYVE9O95405 1425 aa26.99■■□□□ 1.91
HOXA9-203ENST00000465941 NEURL4Q96JN8 1562 aa26.98■■□□□ 1.91
HOXA9-203ENST00000465941 ABCF1Q8NE71 845 aaKnown RBP eCLIP26.98■■□□□ 1.91
HOXA9-203ENST00000465941 RIMS2Q9UQ26 1411 aa26.98■■□□□ 1.91
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms