RNA–Protein interactions for RNA: ENST00000465461.6

CUX1-207, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 502 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-207ENST00000465461 SENP3Q9H4L4 574 aaPredicted RBP17.76■□□□□ 0.43
CUX1-207ENST00000465461 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.75■□□□□ 0.433e-6■■■□□ 16.7
CUX1-207ENST00000465461 ZMYM3Q14202 1370 aa17.74■□□□□ 0.43
CUX1-207ENST00000465461 C3P01024 1663 aa17.74■□□□□ 0.43
CUX1-207ENST00000465461 ERBINQ96RT1 1412 aa17.73■□□□□ 0.43
CUX1-207ENST00000465461 WASHC2CQ9Y4E1 1318 aa17.72■□□□□ 0.43
CUX1-207ENST00000465461 EIF2AK4Q9P2K8 1649 aaKnown RBP17.72■□□□□ 0.43
CUX1-207ENST00000465461 CNTLNQ9NXG0 1405 aa17.72■□□□□ 0.43
CUX1-207ENST00000465461 PPP6R1Q9UPN7 881 aa17.71■□□□□ 0.43
CUX1-207ENST00000465461 MROH1Q8NDA8 1641 aa17.71■□□□□ 0.43
CUX1-207ENST00000465461 RNF17Q9BXT8 1623 aaKnown RBP17.71■□□□□ 0.43
CUX1-207ENST00000465461 ROCK1Q13464 1354 aa17.7■□□□□ 0.42
CUX1-207ENST00000465461 ANKRD50Q9ULJ7 1429 aa17.7■□□□□ 0.42
CUX1-207ENST00000465461 KDM5DQ9BY66 1539 aa17.68■□□□□ 0.42
CUX1-207ENST00000465461 MROH2AA6NES4 1674 aa17.68■□□□□ 0.42
CUX1-207ENST00000465461 FBXO31Q5XUX0 539 aaPredicted RBP17.67■□□□□ 0.42
CUX1-207ENST00000465461 CEP152O94986 1710 aa17.66■□□□□ 0.42
CUX1-207ENST00000465461 ABCC3O15438 1527 aa17.66■□□□□ 0.42
CUX1-207ENST00000465461 HSPA2P54652 639 aa17.64■□□□□ 0.41
CUX1-207ENST00000465461 DEPDC5O75140 1603 aa17.64■□□□□ 0.41
CUX1-207ENST00000465461 PRDM15P57071 1507 aaPredicted RBP17.63■□□□□ 0.41
CUX1-207ENST00000465461 LMTK3Q96Q04 1460 aa17.63■□□□□ 0.41
CUX1-207ENST00000465461 KANK1Q14678 1352 aa17.61■□□□□ 0.41
CUX1-207ENST00000465461 NAIPQ13075 1403 aa17.6■□□□□ 0.41
CUX1-207ENST00000465461 CAMSAP1Q5T5Y3 1602 aa17.6■□□□□ 0.41
CUX1-207ENST00000465461 ZC3H13Q5T200 1668 aaKnown RBP17.6■□□□□ 0.41
CUX1-207ENST00000465461 CFAP65Q6ZU64 1925 aaKnown RBP17.59■□□□□ 0.41
CUX1-207ENST00000465461 PREX1Q8TCU6 1659 aa17.59■□□□□ 0.41
CUX1-207ENST00000465461 FAM135AQ9P2D6 1515 aa17.59■□□□□ 0.41
CUX1-207ENST00000465461 PZPP20742 1482 aa17.59■□□□□ 0.41
CUX1-207ENST00000465461 VWDEQ8N2E2 1590 aa17.58■□□□□ 0.41
CUX1-207ENST00000465461 NPATQ14207 1427 aa17.58■□□□□ 0.41
CUX1-207ENST00000465461 UHRF1BP1Q6BDS2 1440 aa17.58■□□□□ 0.41
CUX1-207ENST00000465461 SETD1BQ9UPS6 1966 aaKnown RBP17.57■□□□□ 0.4
CUX1-207ENST00000465461 GCC2Q8IWJ2 1684 aa17.56■□□□□ 0.4
CUX1-207ENST00000465461 UNC13BO14795 1591 aa17.56■□□□□ 0.4
CUX1-207ENST00000465461 HFM1A2PYH4 1435 aa17.55■□□□□ 0.4
CUX1-207ENST00000465461 NUP155O75694 1391 aa17.55■□□□□ 0.4
CUX1-207ENST00000465461 TNRQ92752 1358 aa17.55■□□□□ 0.4
CUX1-207ENST00000465461 MYO3AQ8NEV4 1616 aa17.54■□□□□ 0.4
CUX1-207ENST00000465461 LMTK2Q8IWU2 1503 aa17.53■□□□□ 0.4
CUX1-207ENST00000465461 ERVK-7P63135 1459 aa17.52■□□□□ 0.4
CUX1-207ENST00000465461 TRIM52Q96A61 297 aa17.52■□□□□ 0.4
CUX1-207ENST00000465461 ARHGAP31Q2M1Z3 1444 aa17.51■□□□□ 0.39
CUX1-207ENST00000465461 SPATA31D1Q6ZQQ2 1576 aa17.5■□□□□ 0.39
CUX1-207ENST00000465461 EFCAB6Q5THR3 1501 aa17.5■□□□□ 0.39
CUX1-207ENST00000465461 PHF23Q9BUL5 403 aaPredicted RBP17.49■□□□□ 0.39
CUX1-207ENST00000465461 IQGAP3Q86VI3 1631 aa17.49■□□□□ 0.39
CUX1-207ENST00000465461 CEP170BQ9Y4F5 1589 aaPredicted RBP17.49■□□□□ 0.39
CUX1-207ENST00000465461 TET3O43151 1660 aa17.48■□□□□ 0.39
CUX1-207ENST00000465461 E9PCH4 1651 aa17.46■□□□□ 0.39
CUX1-207ENST00000465461 A2ML1A8K2U0 1454 aa17.46■□□□□ 0.39
CUX1-207ENST00000465461 ZNF142P52746 1687 aaPredicted RBP17.45■□□□□ 0.38
CUX1-207ENST00000465461 SETD5Q9C0A6 1442 aa17.45■□□□□ 0.38
CUX1-207ENST00000465461 SYNMO15061 1565 aa17.44■□□□□ 0.38
CUX1-207ENST00000465461 NCKAP5LQ9HCH0 1330 aa17.44■□□□□ 0.38
CUX1-207ENST00000465461 IDI1Q13907 227 aa17.43■□□□□ 0.38
CUX1-207ENST00000465461 NOS1P29475 1434 aa17.43■□□□□ 0.38
CUX1-207ENST00000465461 NLRP1Q9C000 1473 aa17.43■□□□□ 0.38
CUX1-207ENST00000465461 STRCQ7RTU9 1775 aa17.42■□□□□ 0.38
CUX1-207ENST00000465461 RAB3GAP2Q9H2M9 1393 aa17.41■□□□□ 0.38
CUX1-207ENST00000465461 UGGT1Q9NYU2 1555 aa17.41■□□□□ 0.38
CUX1-207ENST00000465461 SLC4A1APQ9BWU0 796 aaKnown RBP17.41■□□□□ 0.38
CUX1-207ENST00000465461 RPRD2Q5VT52 1461 aaKnown RBP17.41■□□□□ 0.38
CUX1-207ENST00000465461 PKD2Q13563 968 aa17.4■□□□□ 0.38
CUX1-207ENST00000465461 FOXD1Q16676 465 aa17.4■□□□□ 0.38
CUX1-207ENST00000465461 PIK3C2BO00750 1634 aa17.39■□□□□ 0.38
CUX1-207ENST00000465461 THEMISQ8N1K5 641 aaPredicted RBP17.39■□□□□ 0.37
CUX1-207ENST00000465461 STAG3Q9UJ98 1225 aa17.38■□□□□ 0.37
CUX1-207ENST00000465461 MPHOSPH9Q99550 1183 aa17.37■□□□□ 0.37
CUX1-207ENST00000465461 UBR1Q8IWV7 1749 aa17.37■□□□□ 0.37
CUX1-207ENST00000465461 CHGAP10645 457 aaKnown RBP17.36■□□□□ 0.37
CUX1-207ENST00000465461 SLC52A1Q9NWF4 448 aa17.35■□□□□ 0.37
CUX1-207ENST00000465461 PLA2R1Q13018 1463 aa17.34■□□□□ 0.37
CUX1-207ENST00000465461 SPHKAPQ2M3C7 1700 aa17.33■□□□□ 0.36
CUX1-207ENST00000465461 PTPRTO14522 1441 aa17.32■□□□□ 0.36
CUX1-207ENST00000465461 ANKLE2Q86XL3 938 aa17.32■□□□□ 0.36
CUX1-207ENST00000465461 LTKP29376 864 aa17.31■□□□□ 0.36
CUX1-207ENST00000465461 TRIM26Q12899 539 aaPredicted RBP17.3■□□□□ 0.36
CUX1-207ENST00000465461 TXNDC2Q86VQ3 553 aa17.3■□□□□ 0.36
CUX1-207ENST00000465461 DMRT2Q9Y5R5 561 aa17.3■□□□□ 0.36
CUX1-207ENST00000465461 ADGRB3O60242 1522 aa17.3■□□□□ 0.36
CUX1-207ENST00000465461 MYO5BQ9ULV0 1848 aa17.3■□□□□ 0.36
CUX1-207ENST00000465461 NEURL4Q96JN8 1562 aa17.29■□□□□ 0.36
CUX1-207ENST00000465461 NUTM2DQ5VT03 806 aaPredicted RBP17.29■□□□□ 0.36
CUX1-207ENST00000465461 TMEM2Q9UHN6 1383 aa17.28■□□□□ 0.36
CUX1-207ENST00000465461 POLR1AO95602 1720 aaPredicted RBP17.28■□□□□ 0.36
CUX1-207ENST00000465461 TMEM131LA2VDJ0 1609 aa17.28■□□□□ 0.36
CUX1-207ENST00000465461 CLTCL1P53675 1640 aa17.28■□□□□ 0.36
CUX1-207ENST00000465461 ARHGAP23Q9P227 1491 aa17.27■□□□□ 0.36
CUX1-207ENST00000465461 SLIT1O75093 1534 aa17.26■□□□□ 0.35
CUX1-207ENST00000465461 TRPM2O94759 1503 aa17.26■□□□□ 0.35
CUX1-207ENST00000465461 NPHP4O75161 1426 aaPredicted RBP17.25■□□□□ 0.35
CUX1-207ENST00000465461 HRCP23327 699 aa17.25■□□□□ 0.35
CUX1-207ENST00000465461 EID1Q9Y6B2 187 aa17.25■□□□□ 0.35
CUX1-207ENST00000465461 KDM5AP29375 1690 aaKnown RBP17.25■□□□□ 0.35
CUX1-207ENST00000465461 SCAF11Q99590 1463 aaKnown RBP17.24■□□□□ 0.35
CUX1-207ENST00000465461 ACIN1Q9UKV3 1341 aaKnown RBP17.23■□□□□ 0.35
CUX1-207ENST00000465461 ZNF326Q5BKZ1 582 aaKnown RBP17.23■□□□□ 0.35
CUX1-207ENST00000465461 ZNF335Q9H4Z2 1342 aaPredicted RBP17.22■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms