RNA–Protein interactions for RNA: ENST00000463372.5

C9orf3-211, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 3

Gene C9orf3, Length 919 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-211ENST00000463372 A2MP01023 1474 aa22.72■■□□□ 1.23
C9orf3-211ENST00000463372 FAM135AQ9P2D6 1515 aa22.71■■□□□ 1.23
C9orf3-211ENST00000463372 UGGT1Q9NYU2 1555 aa22.7■■□□□ 1.22
C9orf3-211ENST00000463372 ATP7AQ04656 1500 aa22.69■■□□□ 1.22
C9orf3-211ENST00000463372 FBXO31Q5XUX0 539 aaPredicted RBP22.68■■□□□ 1.22
C9orf3-211ENST00000463372 CSRNP3Q8WYN3 585 aa22.67■■□□□ 1.22
C9orf3-211ENST00000463372 ROBO1Q9Y6N7 1651 aa22.67■■□□□ 1.22
C9orf3-211ENST00000463372 ZNF772Q68DY9 489 aaPredicted RBP22.66■■□□□ 1.22
C9orf3-211ENST00000463372 CDC42BPAQ5VT25 1732 aa22.65■■□□□ 1.22
C9orf3-211ENST00000463372 NLRP1Q9C000 1473 aa22.64■■□□□ 1.21
C9orf3-211ENST00000463372 ZNF777Q9ULD5 760 aaPredicted RBP22.63■■□□□ 1.21
C9orf3-211ENST00000463372 FMN1Q68DA7 1419 aa22.63■■□□□ 1.21
C9orf3-211ENST00000463372 SYCP2Q9BX26 1530 aa22.62■■□□□ 1.21
C9orf3-211ENST00000463372 ADGBQ8N7X0 1667 aa22.62■■□□□ 1.21
C9orf3-211ENST00000463372 INO80Q9ULG1 1556 aaPredicted RBP22.62■■□□□ 1.21
C9orf3-211ENST00000463372 PZPP20742 1482 aa22.61■■□□□ 1.21
C9orf3-211ENST00000463372 ZC3H13Q5T200 1668 aaKnown RBP22.61■■□□□ 1.21
C9orf3-211ENST00000463372 JCADQ9P266 1359 aa22.6■■□□□ 1.21
C9orf3-211ENST00000463372 PHLPP1O60346 1717 aa22.6■■□□□ 1.21
C9orf3-211ENST00000463372 MEX3CQ5U5Q3 659 aaKnown RBP22.59■■□□□ 1.21
C9orf3-211ENST00000463372 RXRBP28702 533 aa22.58■■□□□ 1.21
C9orf3-211ENST00000463372 MIA2Q96PC5 1412 aa22.57■■□□□ 1.2
C9orf3-211ENST00000463372 HNRNPMP52272 730 aaKnown RBP eCLIP22.57■■□□□ 1.26e-7■■■□□ 18.3
C9orf3-211ENST00000463372 LRRIQ1Q96JM4 1722 aa22.57■■□□□ 1.2
C9orf3-211ENST00000463372 KDM5DQ9BY66 1539 aa22.56■■□□□ 1.2
C9orf3-211ENST00000463372 FOXD1Q16676 465 aa22.55■■□□□ 1.2
C9orf3-211ENST00000463372 CDK12Q9NYV4 1490 aaPredicted RBP22.53■■□□□ 1.2
C9orf3-211ENST00000463372 LRRC9Q6ZRR7 1453 aa22.52■■□□□ 1.2
C9orf3-211ENST00000463372 ZRANB1Q9UGI0 708 aa22.51■■□□□ 1.19
C9orf3-211ENST00000463372 WASHC2CQ9Y4E1 1318 aa22.48■■□□□ 1.19
C9orf3-211ENST00000463372 LRP6O75581 1613 aa22.47■■□□□ 1.19
C9orf3-211ENST00000463372 SPATA31A6Q5VVP1 1343 aa22.47■■□□□ 1.19
C9orf3-211ENST00000463372 TMEM94Q12767 1356 aa22.46■■□□□ 1.19
C9orf3-211ENST00000463372 KIAA1107Q9UPP5 1409 aa22.45■■□□□ 1.18
C9orf3-211ENST00000463372 PLEKHH2Q8IVE3 1493 aa22.45■■□□□ 1.18
C9orf3-211ENST00000463372 SCAF11Q99590 1463 aaKnown RBP22.45■■□□□ 1.18
C9orf3-211ENST00000463372 KIF3BO15066 747 aa22.42■■□□□ 1.18
C9orf3-211ENST00000463372 COL16A1Q07092 1604 aaPredicted RBP22.4■■□□□ 1.18
C9orf3-211ENST00000463372 SETBP1Q9Y6X0 1596 aa22.4■■□□□ 1.18
C9orf3-211ENST00000463372 DHX29Q7Z478 1369 aaKnown RBP22.39■■□□□ 1.18
C9orf3-211ENST00000463372 UBR1Q8IWV7 1749 aa22.38■■□□□ 1.17
C9orf3-211ENST00000463372 NUTM2BA6NNL0 878 aaPredicted RBP22.38■■□□□ 1.17
C9orf3-211ENST00000463372 NUTM2EB1AL46 878 aaPredicted RBP22.38■■□□□ 1.17
C9orf3-211ENST00000463372 NUTM2DQ5VT03 806 aaPredicted RBP22.38■■□□□ 1.17
C9orf3-211ENST00000463372 NUTM2AQ8IVF1 878 aaPredicted RBP22.38■■□□□ 1.17
C9orf3-211ENST00000463372 FGD6Q6ZV73 1430 aa22.38■■□□□ 1.17
C9orf3-211ENST00000463372 TXNDC2Q86VQ3 553 aa22.37■■□□□ 1.17
C9orf3-211ENST00000463372 MAP3K1Q13233 1512 aa22.36■■□□□ 1.17
C9orf3-211ENST00000463372 GPATCH8Q9UKJ3 1502 aaKnown RBP22.36■■□□□ 1.17
C9orf3-211ENST00000463372 CCDC18Q5T9S5 1454 aa22.36■■□□□ 1.17
C9orf3-211ENST00000463372 CHIC1Q5VXU3 224 aa22.36■■□□□ 1.17
C9orf3-211ENST00000463372 PROSER2Q86WR7 435 aaPredicted RBP22.36■■□□□ 1.17
C9orf3-211ENST00000463372 SLAIN2Q9P270 581 aa22.36■■□□□ 1.17
C9orf3-211ENST00000463372 CFAP65Q6ZU64 1925 aaKnown RBP22.35■■□□□ 1.17
C9orf3-211ENST00000463372 SHPRHQ149N8 1683 aa22.34■■□□□ 1.17
C9orf3-211ENST00000463372 LTKP29376 864 aa22.34■■□□□ 1.17
C9orf3-211ENST00000463372 RBM33Q96EV2 1170 aaKnown RBP22.34■■□□□ 1.17
C9orf3-211ENST00000463372 CFDP1Q9UEE9 299 aaPredicted RBP22.34■■□□□ 1.17
C9orf3-211ENST00000463372 ARHGAP35Q9NRY4 1499 aa22.34■■□□□ 1.17
C9orf3-211ENST00000463372 MSH6P52701 1360 aa22.33■■□□□ 1.17
C9orf3-211ENST00000463372 RGS12O14924 1447 aa22.32■■□□□ 1.16
C9orf3-211ENST00000463372 EID1Q9Y6B2 187 aa22.32■■□□□ 1.16
C9orf3-211ENST00000463372 EEA1Q15075 1411 aa22.31■■□□□ 1.16
C9orf3-211ENST00000463372 KCNA6P17658 529 aa22.3■■□□□ 1.16
C9orf3-211ENST00000463372 RTEL1-TNFRSF6BF6WH68 1400 aa22.3■■□□□ 1.16
C9orf3-211ENST00000463372 AFF2P51816 1311 aa22.3■■□□□ 1.16
C9orf3-211ENST00000463372 ATAD2Q6PL18 1390 aa22.29■■□□□ 1.16
C9orf3-211ENST00000463372 SLIT1O75093 1534 aa22.29■■□□□ 1.16
C9orf3-211ENST00000463372 TIAM1Q13009 1591 aa22.29■■□□□ 1.16
C9orf3-211ENST00000463372 ARHGAP23Q9P227 1491 aa22.28■■□□□ 1.16
C9orf3-211ENST00000463372 PRDM15P57071 1507 aaPredicted RBP22.27■■□□□ 1.16
C9orf3-211ENST00000463372 RBM6P78332 1123 aaKnown RBP22.27■■□□□ 1.16
C9orf3-211ENST00000463372 ERVK-7P63135 1459 aa22.25■■□□□ 1.15
C9orf3-211ENST00000463372 NCOA2Q15596 1464 aa22.24■■□□□ 1.15
C9orf3-211ENST00000463372 CCNB3Q8WWL7 1395 aa22.23■■□□□ 1.15
C9orf3-211ENST00000463372 ABCC3O15438 1527 aa22.22■■□□□ 1.15
C9orf3-211ENST00000463372 QTRT2Q9H974 415 aaKnown RBP22.22■■□□□ 1.15
C9orf3-211ENST00000463372 NKTRP30414 1462 aaKnown RBP22.22■■□□□ 1.15
C9orf3-211ENST00000463372 UBTFP17480 764 aaKnown RBP22.2■■□□□ 1.14
C9orf3-211ENST00000463372 CASKIN1Q8WXD9 1431 aa22.19■■□□□ 1.14
C9orf3-211ENST00000463372 AHDC1Q5TGY3 1603 aaPredicted RBP22.19■■□□□ 1.14
C9orf3-211ENST00000463372 KDM5AP29375 1690 aaKnown RBP22.18■■□□□ 1.14
C9orf3-211ENST00000463372 NGLY1Q96IV0 654 aa22.18■■□□□ 1.14
C9orf3-211ENST00000463372 EP400Q96L91 3159 aa22.18■■□□□ 1.14
C9orf3-211ENST00000463372 MBD5Q9P267 1494 aa22.16■■□□□ 1.14
C9orf3-211ENST00000463372 NWD1Q149M9 1564 aa22.16■■□□□ 1.14
C9orf3-211ENST00000463372 ZNF644Q9H582 1327 aaPredicted RBP22.15■■□□□ 1.14
C9orf3-211ENST00000463372 SLC26A8Q96RN1 970 aa22.15■■□□□ 1.14
C9orf3-211ENST00000463372 LRP5O75197 1615 aa22.15■■□□□ 1.14
C9orf3-211ENST00000463372 CCDC125Q86Z20 511 aa22.13■■□□□ 1.13
C9orf3-211ENST00000463372 EHMT2Q96KQ7 1210 aa22.13■■□□□ 1.13
C9orf3-211ENST00000463372 C8orf37Q96NL8 207 aa22.12■■□□□ 1.13
C9orf3-211ENST00000463372 TMEM2Q9UHN6 1383 aa22.12■■□□□ 1.13
C9orf3-211ENST00000463372 STAG3Q9UJ98 1225 aa22.1■■□□□ 1.13
C9orf3-211ENST00000463372 DIP2AQ14689 1571 aa22.09■■□□□ 1.13
C9orf3-211ENST00000463372 TET3O43151 1660 aa22.09■■□□□ 1.13
C9orf3-211ENST00000463372 CEP152O94986 1710 aa22.09■■□□□ 1.13
C9orf3-211ENST00000463372 PIK3C2BO00750 1634 aa22.08■■□□□ 1.13
C9orf3-211ENST00000463372 C14orf37Q86TY3 774 aa22.07■■□□□ 1.12
C9orf3-211ENST00000463372 CCDC141Q6ZP82 1450 aa22.06■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms