RNA–Protein interactions for RNA: ENST00000462597.1

PDLIM4-204, Transcript of PDZ and LIM domain 4, humanhuman

TSL 3

Gene PDLIM4, Length 767 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM4-204ENST00000462597 CROCC2H7BZ55 1655 aa28.79■■■□□ 2.2
PDLIM4-204ENST00000462597 CEP170BQ9Y4F5 1589 aaPredicted RBP28.79■■■□□ 2.2
PDLIM4-204ENST00000462597 DMRT2Q9Y5R5 561 aa28.76■■■□□ 2.19
PDLIM4-204ENST00000462597 RNF17Q9BXT8 1623 aaKnown RBP28.76■■■□□ 2.19
PDLIM4-204ENST00000462597 FAM135AQ9P2D6 1515 aa28.75■■■□□ 2.19
PDLIM4-204ENST00000462597 PTPRTO14522 1441 aa28.73■■■□□ 2.19
PDLIM4-204ENST00000462597 CERKQ8TCT0 537 aa28.73■■■□□ 2.19
PDLIM4-204ENST00000462597 EIF2AK4Q9P2K8 1649 aaKnown RBP28.72■■■□□ 2.19
PDLIM4-204ENST00000462597 WASHC2CQ9Y4E1 1318 aa28.71■■■□□ 2.19
PDLIM4-204ENST00000462597 FGD6Q6ZV73 1430 aa28.71■■■□□ 2.19
PDLIM4-204ENST00000462597 PZPP20742 1482 aa28.71■■■□□ 2.19
PDLIM4-204ENST00000462597 ABCC5O15440 1437 aa28.7■■■□□ 2.19
PDLIM4-204ENST00000462597 FBXO31Q5XUX0 539 aaPredicted RBP28.7■■■□□ 2.18
PDLIM4-204ENST00000462597 MROH1Q8NDA8 1641 aa28.69■■■□□ 2.18
PDLIM4-204ENST00000462597 DNMT1P26358 1616 aaKnown RBP28.69■■■□□ 2.18
PDLIM4-204ENST00000462597 SHANK2Q9UPX8 1470 aa28.68■■■□□ 2.18
PDLIM4-204ENST00000462597 TCOF1Q13428 1488 aaKnown RBP28.67■■■□□ 2.18
PDLIM4-204ENST00000462597 ABCC3O15438 1527 aa28.67■■■□□ 2.18
PDLIM4-204ENST00000462597 DUOX2Q9NRD8 1548 aa28.67■■■□□ 2.18
PDLIM4-204ENST00000462597 NCKAP5LQ9HCH0 1330 aa28.67■■■□□ 2.18
PDLIM4-204ENST00000462597 A2ML1A8K2U0 1454 aa28.66■■■□□ 2.18
PDLIM4-204ENST00000462597 TNRQ92752 1358 aa28.66■■■□□ 2.18
PDLIM4-204ENST00000462597 ZC3H13Q5T200 1668 aaKnown RBP28.66■■■□□ 2.18
PDLIM4-204ENST00000462597 DAPK1P53355 1430 aa28.66■■■□□ 2.18
PDLIM4-204ENST00000462597 CEP152O94986 1710 aa28.65■■■□□ 2.18
PDLIM4-204ENST00000462597 PLA2R1Q13018 1463 aa28.64■■■□□ 2.17
PDLIM4-204ENST00000462597 KIF15Q9NS87 1388 aa28.62■■■□□ 2.17
PDLIM4-204ENST00000462597 LTBP4Q8N2S1 1624 aa28.6■■■□□ 2.17
PDLIM4-204ENST00000462597 PPARGC1BQ86YN6 1023 aaKnown RBP28.59■■■□□ 2.17
PDLIM4-204ENST00000462597 RRP7BPQ9NSQ0 103 aa28.59■■■□□ 2.17
PDLIM4-204ENST00000462597 POLR1AO95602 1720 aaPredicted RBP28.55■■■□□ 2.16
PDLIM4-204ENST00000462597 PRDM15P57071 1507 aaPredicted RBP28.55■■■□□ 2.16
PDLIM4-204ENST00000462597 ERBINQ96RT1 1412 aa28.55■■■□□ 2.16
PDLIM4-204ENST00000462597 CHIC2Q9UKJ5 165 aa28.54■■■□□ 2.16
PDLIM4-204ENST00000462597 PKD2Q13563 968 aa28.53■■■□□ 2.16
PDLIM4-204ENST00000462597 SPATA31D1Q6ZQQ2 1576 aa28.53■■■□□ 2.16
PDLIM4-204ENST00000462597 DEPDC5O75140 1603 aa28.52■■■□□ 2.16
PDLIM4-204ENST00000462597 ERVK-7P63135 1459 aa28.52■■■□□ 2.16
PDLIM4-204ENST00000462597 NLRP1Q9C000 1473 aa28.52■■■□□ 2.16
PDLIM4-204ENST00000462597 CFAP65Q6ZU64 1925 aaKnown RBP28.51■■■□□ 2.16
PDLIM4-204ENST00000462597 NEURL4Q96JN8 1562 aa28.5■■■□□ 2.15
PDLIM4-204ENST00000462597 UGGT1Q9NYU2 1555 aa28.5■■■□□ 2.15
PDLIM4-204ENST00000462597 ZNF335Q9H4Z2 1342 aaPredicted RBP28.49■■■□□ 2.15
PDLIM4-204ENST00000462597 FAM50AQ14320 339 aaKnown RBP28.48■■■□□ 2.15
PDLIM4-204ENST00000462597 ANKRD30AQ9BXX3 1397 aa28.48■■■□□ 2.15
PDLIM4-204ENST00000462597 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP28.47■■■□□ 2.15
PDLIM4-204ENST00000462597 GRWD1Q9BQ67 446 aaKnown RBP eCLIP28.45■■■□□ 2.14
PDLIM4-204ENST00000462597 ADGRL2O95490 1459 aa28.43■■■□□ 2.14
PDLIM4-204ENST00000462597 UBR1Q8IWV7 1749 aa28.39■■■□□ 2.14
PDLIM4-204ENST00000462597 THEMISQ8N1K5 641 aaPredicted RBP28.39■■■□□ 2.14
PDLIM4-204ENST00000462597 IQSEC2Q5JU85 1478 aa28.39■■■□□ 2.13
PDLIM4-204ENST00000462597 ARHGAP31Q2M1Z3 1444 aa28.38■■■□□ 2.13
PDLIM4-204ENST00000462597 VWDEQ8N2E2 1590 aa28.37■■■□□ 2.13
PDLIM4-204ENST00000462597 KANK1Q14678 1352 aa28.37■■■□□ 2.13
PDLIM4-204ENST00000462597 ANKLE2Q86XL3 938 aa28.35■■■□□ 2.13
PDLIM4-204ENST00000462597 LMTK2Q8IWU2 1503 aa28.33■■■□□ 2.13
PDLIM4-204ENST00000462597 IQGAP1P46940 1657 aa28.32■■■□□ 2.12
PDLIM4-204ENST00000462597 NPHP4O75161 1426 aaPredicted RBP28.32■■■□□ 2.12
PDLIM4-204ENST00000462597 MED14O60244 1454 aa28.31■■■□□ 2.12
PDLIM4-204ENST00000462597 PIK3C2BO00750 1634 aa28.3■■■□□ 2.12
PDLIM4-204ENST00000462597 EFCAB6Q5THR3 1501 aa28.3■■■□□ 2.12
PDLIM4-204ENST00000462597 ANKRD50Q9ULJ7 1429 aa28.29■■■□□ 2.12
PDLIM4-204ENST00000462597 SYNMO15061 1565 aa28.27■■■□□ 2.12
PDLIM4-204ENST00000462597 CPS1P31327 1500 aa28.23■■■□□ 2.11
PDLIM4-204ENST00000462597 SLIT1O75093 1534 aa28.22■■■□□ 2.11
PDLIM4-204ENST00000462597 SCAF11Q99590 1463 aaKnown RBP28.21■■■□□ 2.11
PDLIM4-204ENST00000462597 ARHGAP23Q9P227 1491 aa28.21■■■□□ 2.11
PDLIM4-204ENST00000462597 UNC13BO14795 1591 aa28.21■■■□□ 2.11
PDLIM4-204ENST00000462597 RRBP1Q9P2E9 1410 aaKnown RBP28.2■■■□□ 2.11
PDLIM4-204ENST00000462597 STRCP1A6NGW2 1772 aa28.2■■■□□ 2.11
PDLIM4-204ENST00000462597 UBAP1LF5GYI3 381 aa28.2■■■□□ 2.1
PDLIM4-204ENST00000462597 TET3O43151 1660 aa28.19■■■□□ 2.1
PDLIM4-204ENST00000462597 ITGAEP38570 1179 aa28.18■■■□□ 2.1
PDLIM4-204ENST00000462597 NOS1P29475 1434 aa28.18■■■□□ 2.1
PDLIM4-204ENST00000462597 ROCK1Q13464 1354 aa28.17■■■□□ 2.1
PDLIM4-204ENST00000462597 LTKP29376 864 aa28.17■■■□□ 2.1
PDLIM4-204ENST00000462597 KDM5AP29375 1690 aaKnown RBP28.16■■■□□ 2.1
PDLIM4-204ENST00000462597 GCC2Q8IWJ2 1684 aa28.16■■■□□ 2.1
PDLIM4-204ENST00000462597 IDI1Q13907 227 aa28.15■■■□□ 2.1
PDLIM4-204ENST00000462597 ADGRB3O60242 1522 aa28.13■■■□□ 2.09
PDLIM4-204ENST00000462597 TXNDC2Q86VQ3 553 aa28.13■■■□□ 2.09
PDLIM4-204ENST00000462597 STAG3Q9UJ98 1225 aa28.13■■■□□ 2.09
PDLIM4-204ENST00000462597 TMEM2Q9UHN6 1383 aa28.12■■■□□ 2.09
PDLIM4-204ENST00000462597 RPRD2Q5VT52 1461 aaKnown RBP28.12■■■□□ 2.09
PDLIM4-204ENST00000462597 E9PCH4 1651 aa28.1■■■□□ 2.09
PDLIM4-204ENST00000462597 IQGAP3Q86VI3 1631 aa28.09■■■□□ 2.09
PDLIM4-204ENST00000462597 MYO5BQ9ULV0 1848 aa28.08■■■□□ 2.09
PDLIM4-204ENST00000462597 EID1Q9Y6B2 187 aa28.08■■■□□ 2.09
PDLIM4-204ENST00000462597 LRRC7Q96NW7 1537 aa28.06■■■□□ 2.08
PDLIM4-204ENST00000462597 ALKQ9UM73 1620 aa28.03■■■□□ 2.08
PDLIM4-204ENST00000462597 SCAF1Q9H7N4 1312 aaKnown RBP28.03■■■□□ 2.08
PDLIM4-204ENST00000462597 PIP4K2BP78356 416 aa28.02■■■□□ 2.08
PDLIM4-204ENST00000462597 SLC52A1Q9NWF4 448 aa28.01■■■□□ 2.07
PDLIM4-204ENST00000462597 TMEM131LA2VDJ0 1609 aa28■■■□□ 2.07
PDLIM4-204ENST00000462597 NUP155O75694 1391 aa27.99■■■□□ 2.07
PDLIM4-204ENST00000462597 XIRP1Q702N8 1843 aaKnown RBP27.98■■■□□ 2.07
PDLIM4-204ENST00000462597 TOM1O60784 492 aa27.98■■■□□ 2.07
PDLIM4-204ENST00000462597 DISP3Q9P2K9 1392 aa27.98■■■□□ 2.07
PDLIM4-204ENST00000462597 SENP3Q9H4L4 574 aaPredicted RBP27.95■■■□□ 2.06
PDLIM4-204ENST00000462597 ZFYVE9O95405 1425 aa27.94■■■□□ 2.06
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms