RNA–Protein interactions for RNA: ENST00000462125.5

C9orf3-210, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 3

Gene C9orf3, Length 961 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-210ENST00000462125 FAM135AQ9P2D6 1515 aa20.54■□□□□ 0.88
C9orf3-210ENST00000462125 SHANK2Q9UPX8 1470 aa20.52■□□□□ 0.88
C9orf3-210ENST00000462125 DAPK1P53355 1430 aa20.52■□□□□ 0.87
C9orf3-210ENST00000462125 STRCQ7RTU9 1775 aa20.51■□□□□ 0.87
C9orf3-210ENST00000462125 KDM5DQ9BY66 1539 aa20.51■□□□□ 0.87
C9orf3-210ENST00000462125 FBXO31Q5XUX0 539 aaPredicted RBP20.5■□□□□ 0.87
C9orf3-210ENST00000462125 RRP7BPQ9NSQ0 103 aa20.5■□□□□ 0.87
C9orf3-210ENST00000462125 DUOX2Q9NRD8 1548 aa20.49■□□□□ 0.87
C9orf3-210ENST00000462125 KIF15Q9NS87 1388 aa20.48■□□□□ 0.87
C9orf3-210ENST00000462125 PTPRTO14522 1441 aa20.48■□□□□ 0.87
C9orf3-210ENST00000462125 PZPP20742 1482 aa20.48■□□□□ 0.87
C9orf3-210ENST00000462125 DISP3Q9P2K9 1392 aa20.47■□□□□ 0.87
C9orf3-210ENST00000462125 NCOA1Q15788 1441 aa20.47■□□□□ 0.87
C9orf3-210ENST00000462125 DNMT1P26358 1616 aaKnown RBP20.46■□□□□ 0.87
C9orf3-210ENST00000462125 RNF17Q9BXT8 1623 aaKnown RBP20.46■□□□□ 0.87
C9orf3-210ENST00000462125 EIF2AK4Q9P2K8 1649 aaKnown RBP20.46■□□□□ 0.87
C9orf3-210ENST00000462125 CHIC2Q9UKJ5 165 aa20.44■□□□□ 0.86
C9orf3-210ENST00000462125 TNRQ92752 1358 aa20.44■□□□□ 0.86
C9orf3-210ENST00000462125 ANKRD30AQ9BXX3 1397 aa20.44■□□□□ 0.86
C9orf3-210ENST00000462125 ERBINQ96RT1 1412 aa20.44■□□□□ 0.86
C9orf3-210ENST00000462125 CAMSAP1Q5T5Y3 1602 aa20.43■□□□□ 0.86
C9orf3-210ENST00000462125 CROCC2H7BZ55 1655 aa20.43■□□□□ 0.86
C9orf3-210ENST00000462125 FAM50AQ14320 339 aaKnown RBP20.43■□□□□ 0.86
C9orf3-210ENST00000462125 CERKQ8TCT0 537 aa20.43■□□□□ 0.86
C9orf3-210ENST00000462125 MYO3AQ8NEV4 1616 aa20.42■□□□□ 0.86
C9orf3-210ENST00000462125 SOCS7O14512 581 aa20.42■□□□□ 0.86
C9orf3-210ENST00000462125 PKD2Q13563 968 aa20.42■□□□□ 0.86
C9orf3-210ENST00000462125 A2ML1A8K2U0 1454 aa20.42■□□□□ 0.86
C9orf3-210ENST00000462125 PLA2R1Q13018 1463 aa20.42■□□□□ 0.86
C9orf3-210ENST00000462125 ABCC3O15438 1527 aa20.42■□□□□ 0.86
C9orf3-210ENST00000462125 CEP170BQ9Y4F5 1589 aaPredicted RBP20.42■□□□□ 0.86
C9orf3-210ENST00000462125 NCKAP5LQ9HCH0 1330 aa20.41■□□□□ 0.86
C9orf3-210ENST00000462125 MROH1Q8NDA8 1641 aa20.41■□□□□ 0.86
C9orf3-210ENST00000462125 ZNF142P52746 1687 aaPredicted RBP20.4■□□□□ 0.86
C9orf3-210ENST00000462125 ADGRL2O95490 1459 aa20.38■□□□□ 0.85
C9orf3-210ENST00000462125 ZC3H13Q5T200 1668 aaKnown RBP20.37■□□□□ 0.85
C9orf3-210ENST00000462125 NLRP1Q9C000 1473 aa20.36■□□□□ 0.85
C9orf3-210ENST00000462125 ARHGAP31Q2M1Z3 1444 aa20.36■□□□□ 0.85
C9orf3-210ENST00000462125 THEMISQ8N1K5 641 aaPredicted RBP20.35■□□□□ 0.85
C9orf3-210ENST00000462125 PRDM15P57071 1507 aaPredicted RBP20.34■□□□□ 0.85
C9orf3-210ENST00000462125 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.34■□□□□ 0.852e-13■■□□□ 12.2
C9orf3-210ENST00000462125 SPATA31D1Q6ZQQ2 1576 aa20.34■□□□□ 0.85
C9orf3-210ENST00000462125 PPARGC1BQ86YN6 1023 aaKnown RBP20.32■□□□□ 0.84
C9orf3-210ENST00000462125 KANK1Q14678 1352 aa20.32■□□□□ 0.84
C9orf3-210ENST00000462125 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP20.32■□□□□ 0.84
C9orf3-210ENST00000462125 DEPDC5O75140 1603 aa20.31■□□□□ 0.84
C9orf3-210ENST00000462125 ERVK-7P63135 1459 aa20.31■□□□□ 0.84
C9orf3-210ENST00000462125 ANKRD50Q9ULJ7 1429 aa20.29■□□□□ 0.84
C9orf3-210ENST00000462125 ANKLE2Q86XL3 938 aa20.29■□□□□ 0.84
C9orf3-210ENST00000462125 LMTK2Q8IWU2 1503 aa20.28■□□□□ 0.84
C9orf3-210ENST00000462125 LTBP4Q8N2S1 1624 aa20.28■□□□□ 0.84
C9orf3-210ENST00000462125 CEP152O94986 1710 aa20.28■□□□□ 0.84
C9orf3-210ENST00000462125 ROCK1Q13464 1354 aa20.28■□□□□ 0.84
C9orf3-210ENST00000462125 VWDEQ8N2E2 1590 aa20.28■□□□□ 0.84
C9orf3-210ENST00000462125 UGGT1Q9NYU2 1555 aa20.28■□□□□ 0.84
C9orf3-210ENST00000462125 ZNF335Q9H4Z2 1342 aaPredicted RBP20.24■□□□□ 0.83
C9orf3-210ENST00000462125 CFAP65Q6ZU64 1925 aaKnown RBP20.21■□□□□ 0.83
C9orf3-210ENST00000462125 MED14O60244 1454 aa20.21■□□□□ 0.83
C9orf3-210ENST00000462125 NEURL4Q96JN8 1562 aa20.21■□□□□ 0.83
C9orf3-210ENST00000462125 IQSEC2Q5JU85 1478 aa20.2■□□□□ 0.82
C9orf3-210ENST00000462125 ITGAEP38570 1179 aa20.19■□□□□ 0.82
C9orf3-210ENST00000462125 IDI1Q13907 227 aa20.19■□□□□ 0.82
C9orf3-210ENST00000462125 NOS1P29475 1434 aa20.19■□□□□ 0.82
C9orf3-210ENST00000462125 RRBP1Q9P2E9 1410 aaKnown RBP20.18■□□□□ 0.82
C9orf3-210ENST00000462125 NPHP4O75161 1426 aaPredicted RBP20.17■□□□□ 0.82
C9orf3-210ENST00000462125 SLC52A1Q9NWF4 448 aa20.16■□□□□ 0.82
C9orf3-210ENST00000462125 EFCAB6Q5THR3 1501 aa20.16■□□□□ 0.82
C9orf3-210ENST00000462125 POLR1AO95602 1720 aaPredicted RBP20.16■□□□□ 0.82
C9orf3-210ENST00000462125 RPRD2Q5VT52 1461 aaKnown RBP20.15■□□□□ 0.82
C9orf3-210ENST00000462125 ARHGAP23Q9P227 1491 aa20.15■□□□□ 0.82
C9orf3-210ENST00000462125 UBR1Q8IWV7 1749 aa20.15■□□□□ 0.82
C9orf3-210ENST00000462125 LTKP29376 864 aa20.14■□□□□ 0.81
C9orf3-210ENST00000462125 TXNDC2Q86VQ3 553 aa20.14■□□□□ 0.81
C9orf3-210ENST00000462125 SLIT1O75093 1534 aa20.13■□□□□ 0.81
C9orf3-210ENST00000462125 STAG3Q9UJ98 1225 aa20.12■□□□□ 0.81
C9orf3-210ENST00000462125 TMEM2Q9UHN6 1383 aa20.11■□□□□ 0.81
C9orf3-210ENST00000462125 EID1Q9Y6B2 187 aa20.11■□□□□ 0.81
C9orf3-210ENST00000462125 UNC13BO14795 1591 aa20.11■□□□□ 0.81
C9orf3-210ENST00000462125 SYNMO15061 1565 aa20.1■□□□□ 0.81
C9orf3-210ENST00000462125 SCAF11Q99590 1463 aaKnown RBP20.1■□□□□ 0.81
C9orf3-210ENST00000462125 PIK3C2BO00750 1634 aa20.09■□□□□ 0.81
C9orf3-210ENST00000462125 NUP155O75694 1391 aa20.08■□□□□ 0.81
C9orf3-210ENST00000462125 TET3O43151 1660 aa20.08■□□□□ 0.81
C9orf3-210ENST00000462125 KDM5AP29375 1690 aaKnown RBP20.08■□□□□ 0.81
C9orf3-210ENST00000462125 CPS1P31327 1500 aa20.07■□□□□ 0.8
C9orf3-210ENST00000462125 IQGAP1P46940 1657 aa20.07■□□□□ 0.8
C9orf3-210ENST00000462125 IQGAP3Q86VI3 1631 aa20.03■□□□□ 0.8
C9orf3-210ENST00000462125 UBAP1LF5GYI3 381 aa20.03■□□□□ 0.8
C9orf3-210ENST00000462125 NAIPQ13075 1403 aa20.02■□□□□ 0.8
C9orf3-210ENST00000462125 GCC2Q8IWJ2 1684 aa20.02■□□□□ 0.8
C9orf3-210ENST00000462125 ADGRB3O60242 1522 aa20.01■□□□□ 0.79
C9orf3-210ENST00000462125 HDGFP51858 240 aaKnown RBP19.99■□□□□ 0.79
C9orf3-210ENST00000462125 E9PCH4 1651 aa19.99■□□□□ 0.79
C9orf3-210ENST00000462125 TOM1O60784 492 aa19.98■□□□□ 0.79
C9orf3-210ENST00000462125 HFM1A2PYH4 1435 aa19.96■□□□□ 0.79
C9orf3-210ENST00000462125 ZFYVE9O95405 1425 aa19.96■□□□□ 0.79
C9orf3-210ENST00000462125 LRRC7Q96NW7 1537 aa19.95■□□□□ 0.78
C9orf3-210ENST00000462125 TMEM131LA2VDJ0 1609 aa19.94■□□□□ 0.78
C9orf3-210ENST00000462125 STRCP1A6NGW2 1772 aa19.94■□□□□ 0.78
C9orf3-210ENST00000462125 SLC26A8Q96RN1 970 aa19.94■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms