RNA–Protein interactions for RNA: ENST00000461874.1

VARS-220, Transcript of valyl-tRNA synthetase, humanhuman

TSL 5

Gene VARS, Length 845 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-220ENST00000461874 CERKQ8TCT0 537 aa29.57■■■□□ 2.32
VARS-220ENST00000461874 ABCC5O15440 1437 aa29.55■■■□□ 2.32
VARS-220ENST00000461874 FGD6Q6ZV73 1430 aa29.55■■■□□ 2.32
VARS-220ENST00000461874 PTPN23Q9H3S7 1636 aa29.55■■■□□ 2.32
VARS-220ENST00000461874 FBXO31Q5XUX0 539 aaPredicted RBP29.54■■■□□ 2.32
VARS-220ENST00000461874 CAMSAP1Q5T5Y3 1602 aa29.53■■■□□ 2.32
VARS-220ENST00000461874 MYO3AQ8NEV4 1616 aa29.53■■■□□ 2.32
VARS-220ENST00000461874 PZPP20742 1482 aa29.52■■■□□ 2.32
VARS-220ENST00000461874 TCOF1Q13428 1488 aaKnown RBP29.52■■■□□ 2.32
VARS-220ENST00000461874 SHANK2Q9UPX8 1470 aa29.51■■■□□ 2.31
VARS-220ENST00000461874 CEP170BQ9Y4F5 1589 aaPredicted RBP29.51■■■□□ 2.31
VARS-220ENST00000461874 ZNF142P52746 1687 aaPredicted RBP29.5■■■□□ 2.31
VARS-220ENST00000461874 TNRQ92752 1358 aa29.49■■■□□ 2.31
VARS-220ENST00000461874 RNF17Q9BXT8 1623 aaKnown RBP29.49■■■□□ 2.31
VARS-220ENST00000461874 DAPK1P53355 1430 aa29.48■■■□□ 2.31
VARS-220ENST00000461874 DUOX2Q9NRD8 1548 aa29.48■■■□□ 2.31
VARS-220ENST00000461874 KIF15Q9NS87 1388 aa29.48■■■□□ 2.31
VARS-220ENST00000461874 NCKAP5LQ9HCH0 1330 aa29.47■■■□□ 2.31
VARS-220ENST00000461874 A2ML1A8K2U0 1454 aa29.47■■■□□ 2.31
VARS-220ENST00000461874 EIF2AK4Q9P2K8 1649 aaKnown RBP29.46■■■□□ 2.31
VARS-220ENST00000461874 PKD2Q13563 968 aa29.46■■■□□ 2.31
VARS-220ENST00000461874 RRP7BPQ9NSQ0 103 aa29.46■■■□□ 2.31
VARS-220ENST00000461874 PLA2R1Q13018 1463 aa29.46■■■□□ 2.31
VARS-220ENST00000461874 ABCC3O15438 1527 aa29.43■■■□□ 2.3
VARS-220ENST00000461874 DNMT1P26358 1616 aaKnown RBP29.42■■■□□ 2.3
VARS-220ENST00000461874 CROCC2H7BZ55 1655 aa29.42■■■□□ 2.3
VARS-220ENST00000461874 ERBINQ96RT1 1412 aa29.4■■■□□ 2.3
VARS-220ENST00000461874 MROH1Q8NDA8 1641 aa29.4■■■□□ 2.3
VARS-220ENST00000461874 CHIC2Q9UKJ5 165 aa29.39■■■□□ 2.3
VARS-220ENST00000461874 ANKRD30AQ9BXX3 1397 aa29.38■■■□□ 2.29
VARS-220ENST00000461874 ZC3H13Q5T200 1668 aaKnown RBP29.36■■■□□ 2.29
VARS-220ENST00000461874 FAM50AQ14320 339 aaKnown RBP29.35■■■□□ 2.29
VARS-220ENST00000461874 NLRP1Q9C000 1473 aa29.35■■■□□ 2.29
VARS-220ENST00000461874 LTBP4Q8N2S1 1624 aa29.33■■■□□ 2.29
VARS-220ENST00000461874 THEMISQ8N1K5 641 aaPredicted RBP29.31■■■□□ 2.28
VARS-220ENST00000461874 SPATA31D1Q6ZQQ2 1576 aa29.3■■■□□ 2.28
VARS-220ENST00000461874 PRDM15P57071 1507 aaPredicted RBP29.3■■■□□ 2.28
VARS-220ENST00000461874 ERVK-7P63135 1459 aa29.29■■■□□ 2.28
VARS-220ENST00000461874 GRWD1Q9BQ67 446 aaKnown RBP eCLIP29.29■■■□□ 2.28
VARS-220ENST00000461874 ZNF335Q9H4Z2 1342 aaPredicted RBP29.27■■■□□ 2.28
VARS-220ENST00000461874 ADGRL2O95490 1459 aa29.27■■■□□ 2.28
VARS-220ENST00000461874 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP29.26■■■□□ 2.28
VARS-220ENST00000461874 CEP152O94986 1710 aa29.26■■■□□ 2.27
VARS-220ENST00000461874 ANKLE2Q86XL3 938 aa29.26■■■□□ 2.27
VARS-220ENST00000461874 ARHGAP31Q2M1Z3 1444 aa29.26■■■□□ 2.27
VARS-220ENST00000461874 UGGT1Q9NYU2 1555 aa29.26■■■□□ 2.27
VARS-220ENST00000461874 KANK1Q14678 1352 aa29.25■■■□□ 2.27
VARS-220ENST00000461874 DEPDC5O75140 1603 aa29.23■■■□□ 2.27
VARS-220ENST00000461874 IQSEC2Q5JU85 1478 aa29.2■■■□□ 2.26
VARS-220ENST00000461874 NEURL4Q96JN8 1562 aa29.19■■■□□ 2.26
VARS-220ENST00000461874 ANKRD50Q9ULJ7 1429 aa29.16■■■□□ 2.26
VARS-220ENST00000461874 VWDEQ8N2E2 1590 aa29.16■■■□□ 2.26
VARS-220ENST00000461874 CFAP65Q6ZU64 1925 aaKnown RBP29.16■■■□□ 2.26
VARS-220ENST00000461874 LMTK2Q8IWU2 1503 aa29.15■■■□□ 2.26
VARS-220ENST00000461874 POLR1AO95602 1720 aaPredicted RBP29.15■■■□□ 2.26
VARS-220ENST00000461874 PPARGC1BQ86YN6 1023 aaKnown RBP29.15■■■□□ 2.26
VARS-220ENST00000461874 MED14O60244 1454 aa29.13■■■□□ 2.25
VARS-220ENST00000461874 NPHP4O75161 1426 aaPredicted RBP29.12■■■□□ 2.25
VARS-220ENST00000461874 ROCK1Q13464 1354 aa29.08■■■□□ 2.25
VARS-220ENST00000461874 UBR1Q8IWV7 1749 aa29.06■■■□□ 2.24
VARS-220ENST00000461874 EFCAB6Q5THR3 1501 aa29.04■■■□□ 2.24
VARS-220ENST00000461874 IDI1Q13907 227 aa29.03■■■□□ 2.24
VARS-220ENST00000461874 ARHGAP23Q9P227 1491 aa29.03■■■□□ 2.24
VARS-220ENST00000461874 NOS1P29475 1434 aa29.03■■■□□ 2.24
VARS-220ENST00000461874 LTKP29376 864 aa29.02■■■□□ 2.24
VARS-220ENST00000461874 CPS1P31327 1500 aa29.01■■■□□ 2.23
VARS-220ENST00000461874 UBAP1LF5GYI3 381 aa29.01■■■□□ 2.23
VARS-220ENST00000461874 ITGAEP38570 1179 aa29.01■■■□□ 2.23
VARS-220ENST00000461874 TXNDC2Q86VQ3 553 aa29.01■■■□□ 2.23
VARS-220ENST00000461874 SLIT1O75093 1534 aa29■■■□□ 2.23
VARS-220ENST00000461874 IQGAP1P46940 1657 aa29■■■□□ 2.23
VARS-220ENST00000461874 SCAF11Q99590 1463 aaKnown RBP29■■■□□ 2.23
VARS-220ENST00000461874 STAG3Q9UJ98 1225 aa29■■■□□ 2.23
VARS-220ENST00000461874 PIK3C2BO00750 1634 aa28.98■■■□□ 2.23
VARS-220ENST00000461874 EID1Q9Y6B2 187 aa28.97■■■□□ 2.23
VARS-220ENST00000461874 TMEM2Q9UHN6 1383 aa28.97■■■□□ 2.23
VARS-220ENST00000461874 RPRD2Q5VT52 1461 aaKnown RBP28.97■■■□□ 2.23
VARS-220ENST00000461874 SYNMO15061 1565 aa28.96■■■□□ 2.23
VARS-220ENST00000461874 SLC52A1Q9NWF4 448 aa28.96■■■□□ 2.23
VARS-220ENST00000461874 UNC13BO14795 1591 aa28.92■■■□□ 2.22
VARS-220ENST00000461874 TET3O43151 1660 aa28.91■■■□□ 2.22
VARS-220ENST00000461874 KDM5AP29375 1690 aaKnown RBP28.9■■■□□ 2.22
VARS-220ENST00000461874 RRBP1Q9P2E9 1410 aaKnown RBP28.89■■■□□ 2.22
VARS-220ENST00000461874 NUP155O75694 1391 aa28.87■■■□□ 2.21
VARS-220ENST00000461874 TOM1O60784 492 aa28.86■■■□□ 2.21
VARS-220ENST00000461874 ADGRB3O60242 1522 aa28.85■■■□□ 2.21
VARS-220ENST00000461874 GCC2Q8IWJ2 1684 aa28.83■■■□□ 2.21
VARS-220ENST00000461874 LRRC7Q96NW7 1537 aa28.82■■■□□ 2.2
VARS-220ENST00000461874 STRCP1A6NGW2 1772 aa28.81■■■□□ 2.2
VARS-220ENST00000461874 IQGAP3Q86VI3 1631 aa28.81■■■□□ 2.2
VARS-220ENST00000461874 PIP4K2BP78356 416 aa28.78■■■□□ 2.2
VARS-220ENST00000461874 E9PCH4 1651 aa28.77■■■□□ 2.2
VARS-220ENST00000461874 SCAF1Q9H7N4 1312 aaKnown RBP28.76■■■□□ 2.19
VARS-220ENST00000461874 SLC26A8Q96RN1 970 aa28.75■■■□□ 2.19
VARS-220ENST00000461874 ZFYVE9O95405 1425 aa28.74■■■□□ 2.19
VARS-220ENST00000461874 HDGFP51858 240 aaKnown RBP28.73■■■□□ 2.19
VARS-220ENST00000461874 CHGAP10645 457 aaKnown RBP28.72■■■□□ 2.19
VARS-220ENST00000461874 TMEM131LA2VDJ0 1609 aa28.72■■■□□ 2.19
VARS-220ENST00000461874 RIMS2Q9UQ26 1411 aa28.71■■■□□ 2.19
VARS-220ENST00000461874 KCNA6P17658 529 aa28.71■■■□□ 2.19
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms