RNA–Protein interactions for RNA: ENST00000461743.1

VPS52-213, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 3

Gene VPS52, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-213ENST00000461743 MLECQ14165 292 aa18.24■□□□□ 0.51
VPS52-213ENST00000461743 ANKRD30AQ9BXX3 1397 aa18.24■□□□□ 0.51
VPS52-213ENST00000461743 PPP6R1Q9UPN7 881 aa18.23■□□□□ 0.51
VPS52-213ENST00000461743 NCOA1Q15788 1441 aa18.22■□□□□ 0.51
VPS52-213ENST00000461743 FAM50AQ14320 339 aaKnown RBP18.21■□□□□ 0.51
VPS52-213ENST00000461743 CEP152O94986 1710 aa18.2■□□□□ 0.5
VPS52-213ENST00000461743 ROCK1Q13464 1354 aa18.19■□□□□ 0.5
VPS52-213ENST00000461743 ESF1Q9H501 851 aaKnown RBP18.19■□□□□ 0.5
VPS52-213ENST00000461743 GCC2Q8IWJ2 1684 aa18.18■□□□□ 0.5
VPS52-213ENST00000461743 CAMSAP1Q5T5Y3 1602 aa18.18■□□□□ 0.5
VPS52-213ENST00000461743 ZNF142P52746 1687 aaPredicted RBP18.17■□□□□ 0.5
VPS52-213ENST00000461743 ABCC3O15438 1527 aa18.17■□□□□ 0.5
VPS52-213ENST00000461743 NPATQ14207 1427 aa18.16■□□□□ 0.5
VPS52-213ENST00000461743 UNC13BO14795 1591 aa18.16■□□□□ 0.5
VPS52-213ENST00000461743 KIF3BO15066 747 aa18.15■□□□□ 0.5
VPS52-213ENST00000461743 PPARGC1BQ86YN6 1023 aaKnown RBP18.15■□□□□ 0.5
VPS52-213ENST00000461743 PTPRKQ15262 1439 aa18.15■□□□□ 0.5
VPS52-213ENST00000461743 LMTK3Q96Q04 1460 aa18.14■□□□□ 0.5
VPS52-213ENST00000461743 VWDEQ8N2E2 1590 aa18.14■□□□□ 0.49
VPS52-213ENST00000461743 MYO3AQ8NEV4 1616 aa18.14■□□□□ 0.49
VPS52-213ENST00000461743 PZPP20742 1482 aa18.14■□□□□ 0.49
VPS52-213ENST00000461743 GGT6Q6P531 493 aa18.13■□□□□ 0.49
VPS52-213ENST00000461743 LMTK2Q8IWU2 1503 aa18.12■□□□□ 0.49
VPS52-213ENST00000461743 ZMYM3Q14202 1370 aa18.11■□□□□ 0.49
VPS52-213ENST00000461743 ANKRD50Q9ULJ7 1429 aa18.11■□□□□ 0.49
VPS52-213ENST00000461743 RRP7BPQ9NSQ0 103 aa18.1■□□□□ 0.49
VPS52-213ENST00000461743 CHIC2Q9UKJ5 165 aa18.1■□□□□ 0.49
VPS52-213ENST00000461743 TET3O43151 1660 aa18.09■□□□□ 0.49
VPS52-213ENST00000461743 UHRF1BP1Q6BDS2 1440 aa18.08■□□□□ 0.49
VPS52-213ENST00000461743 IQGAP3Q86VI3 1631 aa18.08■□□□□ 0.48
VPS52-213ENST00000461743 SPATA31D1Q6ZQQ2 1576 aa18.07■□□□□ 0.48
VPS52-213ENST00000461743 EFCAB6Q5THR3 1501 aa18.07■□□□□ 0.48
VPS52-213ENST00000461743 KANK1Q14678 1352 aa18.06■□□□□ 0.48
VPS52-213ENST00000461743 WASHC2CQ9Y4E1 1318 aa18.06■□□□□ 0.48
VPS52-213ENST00000461743 ARHGAP31Q2M1Z3 1444 aa18.06■□□□□ 0.48
VPS52-213ENST00000461743 CFAP65Q6ZU64 1925 aaKnown RBP18.06■□□□□ 0.48
VPS52-213ENST00000461743 CEP170BQ9Y4F5 1589 aaPredicted RBP18.05■□□□□ 0.48
VPS52-213ENST00000461743 CEBPAP49715 358 aaPredicted RBP18.03■□□□□ 0.48
VPS52-213ENST00000461743 ERVK-7P63135 1459 aa18.01■□□□□ 0.47
VPS52-213ENST00000461743 HFM1A2PYH4 1435 aa18.01■□□□□ 0.47
VPS52-213ENST00000461743 RPRD2Q5VT52 1461 aaKnown RBP18.01■□□□□ 0.47
VPS52-213ENST00000461743 NLRP1Q9C000 1473 aa18.01■□□□□ 0.47
VPS52-213ENST00000461743 KDM5AP29375 1690 aaKnown RBP18■□□□□ 0.47
VPS52-213ENST00000461743 PLPPR3Q6T4P5 718 aa18■□□□□ 0.47
VPS52-213ENST00000461743 A2ML1A8K2U0 1454 aa17.99■□□□□ 0.47
VPS52-213ENST00000461743 NAIPQ13075 1403 aa17.98■□□□□ 0.47
VPS52-213ENST00000461743 POLR1AO95602 1720 aaPredicted RBP17.98■□□□□ 0.47
VPS52-213ENST00000461743 E9PCH4 1651 aa17.98■□□□□ 0.47
VPS52-213ENST00000461743 STRCQ7RTU9 1775 aa17.98■□□□□ 0.47
VPS52-213ENST00000461743 TNRQ92752 1358 aa17.97■□□□□ 0.47
VPS52-213ENST00000461743 ITGAEP38570 1179 aa17.97■□□□□ 0.47
VPS52-213ENST00000461743 PLA2R1Q13018 1463 aa17.95■□□□□ 0.46
VPS52-213ENST00000461743 UBR1Q8IWV7 1749 aa17.95■□□□□ 0.46
VPS52-213ENST00000461743 SPHKAPQ2M3C7 1700 aa17.92■□□□□ 0.46
VPS52-213ENST00000461743 SYNMO15061 1565 aa17.92■□□□□ 0.46
VPS52-213ENST00000461743 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.91■□□□□ 0.46
VPS52-213ENST00000461743 UGGT1Q9NYU2 1555 aa17.91■□□□□ 0.46
VPS52-213ENST00000461743 PIK3C2BO00750 1634 aa17.9■□□□□ 0.46
VPS52-213ENST00000461743 NOS1P29475 1434 aa17.89■□□□□ 0.46
VPS52-213ENST00000461743 FBXO31Q5XUX0 539 aaPredicted RBP17.87■□□□□ 0.45
VPS52-213ENST00000461743 NUP155O75694 1391 aa17.87■□□□□ 0.45
VPS52-213ENST00000461743 HSPA2P54652 639 aa17.86■□□□□ 0.45
VPS52-213ENST00000461743 ACIN1Q9UKV3 1341 aaKnown RBP17.86■□□□□ 0.45
VPS52-213ENST00000461743 ADGRB3O60242 1522 aa17.86■□□□□ 0.45
VPS52-213ENST00000461743 MYO5BQ9ULV0 1848 aa17.86■□□□□ 0.45
VPS52-213ENST00000461743 PTPRTO14522 1441 aa17.83■□□□□ 0.45
VPS52-213ENST00000461743 NEURL4Q96JN8 1562 aa17.83■□□□□ 0.44
VPS52-213ENST00000461743 SLIT1O75093 1534 aa17.82■□□□□ 0.44
VPS52-213ENST00000461743 TRPM2O94759 1503 aa17.81■□□□□ 0.44
VPS52-213ENST00000461743 IQGAP1P46940 1657 aa17.8■□□□□ 0.44
VPS52-213ENST00000461743 KIF1BO60333 1816 aa17.8■□□□□ 0.44
VPS52-213ENST00000461743 DMRT2Q9Y5R5 561 aa17.8■□□□□ 0.44
VPS52-213ENST00000461743 TMEM131LA2VDJ0 1609 aa17.8■□□□□ 0.44
VPS52-213ENST00000461743 PKD2Q13563 968 aa17.79■□□□□ 0.44
VPS52-213ENST00000461743 ARHGAP23Q9P227 1491 aa17.79■□□□□ 0.44
VPS52-213ENST00000461743 SETD5Q9C0A6 1442 aa17.79■□□□□ 0.44
VPS52-213ENST00000461743 THEMISQ8N1K5 641 aaPredicted RBP17.78■□□□□ 0.44
VPS52-213ENST00000461743 SLC52A1Q9NWF4 448 aa17.78■□□□□ 0.44
VPS52-213ENST00000461743 MED14O60244 1454 aa17.77■□□□□ 0.44
VPS52-213ENST00000461743 CLTCL1P53675 1640 aa17.75■□□□□ 0.43
VPS52-213ENST00000461743 SCAF11Q99590 1463 aaKnown RBP17.74■□□□□ 0.43
VPS52-213ENST00000461743 RAB3GAP2Q9H2M9 1393 aa17.71■□□□□ 0.43
VPS52-213ENST00000461743 TMEM2Q9UHN6 1383 aa17.7■□□□□ 0.42
VPS52-213ENST00000461743 IDI1Q13907 227 aa17.7■□□□□ 0.42
VPS52-213ENST00000461743 TRIM52Q96A61 297 aa17.7■□□□□ 0.42
VPS52-213ENST00000461743 ANKLE2Q86XL3 938 aa17.69■□□□□ 0.42
VPS52-213ENST00000461743 NPHP4O75161 1426 aaPredicted RBP17.68■□□□□ 0.42
VPS52-213ENST00000461743 ZFYVE9O95405 1425 aa17.67■□□□□ 0.42
VPS52-213ENST00000461743 HRCP23327 699 aa17.67■□□□□ 0.42
VPS52-213ENST00000461743 SLC4A1APQ9BWU0 796 aaKnown RBP17.67■□□□□ 0.42
VPS52-213ENST00000461743 STAG3Q9UJ98 1225 aa17.67■□□□□ 0.42
VPS52-213ENST00000461743 NCKAP5LQ9HCH0 1330 aa17.67■□□□□ 0.42
VPS52-213ENST00000461743 LTBP4Q8N2S1 1624 aa17.65■□□□□ 0.42
VPS52-213ENST00000461743 PPLO60437 1756 aa17.64■□□□□ 0.41
VPS52-213ENST00000461743 DIP2AQ14689 1571 aa17.64■□□□□ 0.41
VPS52-213ENST00000461743 IQSEC2Q5JU85 1478 aa17.63■□□□□ 0.41
VPS52-213ENST00000461743 EID1Q9Y6B2 187 aa17.63■□□□□ 0.41
VPS52-213ENST00000461743 IFT172Q9UG01 1749 aa17.63■□□□□ 0.41
VPS52-213ENST00000461743 CPS1P31327 1500 aa17.62■□□□□ 0.41
VPS52-213ENST00000461743 RIMS2Q9UQ26 1411 aa17.62■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms