RNA–Protein interactions for RNA: ENST00000461328.1

VARS-219, Transcript of valyl-tRNA synthetase, humanhuman

TSL 3

Gene VARS, Length 662 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-219ENST00000461328 CROCC2H7BZ55 1655 aa23.82■■□□□ 1.4
VARS-219ENST00000461328 DAPK1P53355 1430 aa23.81■■□□□ 1.4
VARS-219ENST00000461328 DNMT1P26358 1616 aaKnown RBP23.81■■□□□ 1.4
VARS-219ENST00000461328 MYO3AQ8NEV4 1616 aa23.8■■□□□ 1.4
VARS-219ENST00000461328 DUOX2Q9NRD8 1548 aa23.79■■□□□ 1.4
VARS-219ENST00000461328 STRCQ7RTU9 1775 aa23.79■■□□□ 1.4
VARS-219ENST00000461328 DMRT2Q9Y5R5 561 aa23.79■■□□□ 1.4
VARS-219ENST00000461328 EIF2AK4Q9P2K8 1649 aaKnown RBP23.79■■□□□ 1.4
VARS-219ENST00000461328 KIF15Q9NS87 1388 aa23.78■■□□□ 1.4
VARS-219ENST00000461328 RNF17Q9BXT8 1623 aaKnown RBP23.78■■□□□ 1.4
VARS-219ENST00000461328 RRP7BPQ9NSQ0 103 aa23.76■■□□□ 1.39
VARS-219ENST00000461328 PZPP20742 1482 aa23.75■■□□□ 1.39
VARS-219ENST00000461328 CEP170BQ9Y4F5 1589 aaPredicted RBP23.74■■□□□ 1.39
VARS-219ENST00000461328 ZNF142P52746 1687 aaPredicted RBP23.74■■□□□ 1.39
VARS-219ENST00000461328 FAM50AQ14320 339 aaKnown RBP23.74■■□□□ 1.39
VARS-219ENST00000461328 NCOA1Q15788 1441 aa23.74■■□□□ 1.39
VARS-219ENST00000461328 CAMSAP1Q5T5Y3 1602 aa23.73■■□□□ 1.39
VARS-219ENST00000461328 FBXO31Q5XUX0 539 aaPredicted RBP23.73■■□□□ 1.39
VARS-219ENST00000461328 PPARGC1BQ86YN6 1023 aaKnown RBP23.72■■□□□ 1.39
VARS-219ENST00000461328 CHIC2Q9UKJ5 165 aa23.72■■□□□ 1.39
VARS-219ENST00000461328 TNRQ92752 1358 aa23.72■■□□□ 1.39
VARS-219ENST00000461328 ERBINQ96RT1 1412 aa23.72■■□□□ 1.39
VARS-219ENST00000461328 ZC3H13Q5T200 1668 aaKnown RBP23.71■■□□□ 1.39
VARS-219ENST00000461328 ABCC3O15438 1527 aa23.71■■□□□ 1.39
VARS-219ENST00000461328 ANKRD30AQ9BXX3 1397 aa23.71■■□□□ 1.39
VARS-219ENST00000461328 MROH1Q8NDA8 1641 aa23.7■■□□□ 1.38
VARS-219ENST00000461328 PTPRTO14522 1441 aa23.69■■□□□ 1.38
VARS-219ENST00000461328 FBXO41Q8TF61 875 aa23.69■■□□□ 1.38
VARS-219ENST00000461328 A2ML1A8K2U0 1454 aa23.68■■□□□ 1.38
VARS-219ENST00000461328 PLA2R1Q13018 1463 aa23.66■■□□□ 1.38
VARS-219ENST00000461328 PRDM15P57071 1507 aaPredicted RBP23.64■■□□□ 1.38
VARS-219ENST00000461328 NCKAP5LQ9HCH0 1330 aa23.64■■□□□ 1.38
VARS-219ENST00000461328 CERKQ8TCT0 537 aa23.64■■□□□ 1.37
VARS-219ENST00000461328 CEP152O94986 1710 aa23.64■■□□□ 1.37
VARS-219ENST00000461328 ADGRL2O95490 1459 aa23.63■■□□□ 1.37
VARS-219ENST00000461328 GRWD1Q9BQ67 446 aaKnown RBP eCLIP23.63■■□□□ 1.377e-7■■□□□ 12.5
VARS-219ENST00000461328 NLRP1Q9C000 1473 aa23.62■■□□□ 1.37
VARS-219ENST00000461328 PKD2Q13563 968 aa23.61■■□□□ 1.37
VARS-219ENST00000461328 KANK1Q14678 1352 aa23.6■■□□□ 1.37
VARS-219ENST00000461328 DEPDC5O75140 1603 aa23.59■■□□□ 1.37
VARS-219ENST00000461328 ERVK-7P63135 1459 aa23.59■■□□□ 1.37
VARS-219ENST00000461328 SPATA31D1Q6ZQQ2 1576 aa23.59■■□□□ 1.37
VARS-219ENST00000461328 UGGT1Q9NYU2 1555 aa23.55■■□□□ 1.36
VARS-219ENST00000461328 ARHGAP31Q2M1Z3 1444 aa23.54■■□□□ 1.36
VARS-219ENST00000461328 THEMISQ8N1K5 641 aaPredicted RBP23.54■■□□□ 1.36
VARS-219ENST00000461328 ANKRD50Q9ULJ7 1429 aa23.53■■□□□ 1.36
VARS-219ENST00000461328 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP23.52■■□□□ 1.36
VARS-219ENST00000461328 ITGAEP38570 1179 aa23.51■■□□□ 1.35
VARS-219ENST00000461328 CFAP65Q6ZU64 1925 aaKnown RBP23.51■■□□□ 1.35
VARS-219ENST00000461328 LMTK2Q8IWU2 1503 aa23.5■■□□□ 1.35
VARS-219ENST00000461328 POLR1AO95602 1720 aaPredicted RBP23.5■■□□□ 1.35
VARS-219ENST00000461328 VWDEQ8N2E2 1590 aa23.49■■□□□ 1.35
VARS-219ENST00000461328 LTBP4Q8N2S1 1624 aa23.49■■□□□ 1.35
VARS-219ENST00000461328 ANKLE2Q86XL3 938 aa23.49■■□□□ 1.35
VARS-219ENST00000461328 ZNF335Q9H4Z2 1342 aaPredicted RBP23.47■■□□□ 1.35
VARS-219ENST00000461328 ROCK1Q13464 1354 aa23.47■■□□□ 1.35
VARS-219ENST00000461328 NEURL4Q96JN8 1562 aa23.46■■□□□ 1.35
VARS-219ENST00000461328 EFCAB6Q5THR3 1501 aa23.43■■□□□ 1.34
VARS-219ENST00000461328 UBR1Q8IWV7 1749 aa23.42■■□□□ 1.34
VARS-219ENST00000461328 RRBP1Q9P2E9 1410 aaKnown RBP23.42■■□□□ 1.34
VARS-219ENST00000461328 NPHP4O75161 1426 aaPredicted RBP23.4■■□□□ 1.34
VARS-219ENST00000461328 MED14O60244 1454 aa23.39■■□□□ 1.34
VARS-219ENST00000461328 IQSEC2Q5JU85 1478 aa23.39■■□□□ 1.34
VARS-219ENST00000461328 UNC13BO14795 1591 aa23.39■■□□□ 1.33
VARS-219ENST00000461328 STAG3Q9UJ98 1225 aa23.38■■□□□ 1.33
VARS-219ENST00000461328 PIK3C2BO00750 1634 aa23.37■■□□□ 1.33
VARS-219ENST00000461328 NOS1P29475 1434 aa23.36■■□□□ 1.33
VARS-219ENST00000461328 RPRD2Q5VT52 1461 aaKnown RBP23.36■■□□□ 1.33
VARS-219ENST00000461328 SYNMO15061 1565 aa23.35■■□□□ 1.33
VARS-219ENST00000461328 TET3O43151 1660 aa23.35■■□□□ 1.33
VARS-219ENST00000461328 IQGAP1P46940 1657 aa23.35■■□□□ 1.33
VARS-219ENST00000461328 IDI1Q13907 227 aa23.34■■□□□ 1.33
VARS-219ENST00000461328 SCAF11Q99590 1463 aaKnown RBP23.34■■□□□ 1.33
VARS-219ENST00000461328 SLIT1O75093 1534 aa23.33■■□□□ 1.32
VARS-219ENST00000461328 ARHGAP23Q9P227 1491 aa23.32■■□□□ 1.32
VARS-219ENST00000461328 TXNDC2Q86VQ3 553 aa23.32■■□□□ 1.32
VARS-219ENST00000461328 EID1Q9Y6B2 187 aa23.31■■□□□ 1.32
VARS-219ENST00000461328 GCC2Q8IWJ2 1684 aa23.31■■□□□ 1.32
VARS-219ENST00000461328 CPS1P31327 1500 aa23.3■■□□□ 1.32
VARS-219ENST00000461328 SLC52A1Q9NWF4 448 aa23.3■■□□□ 1.32
VARS-219ENST00000461328 IQGAP3Q86VI3 1631 aa23.3■■□□□ 1.32
VARS-219ENST00000461328 NUP155O75694 1391 aa23.29■■□□□ 1.32
VARS-219ENST00000461328 TMEM2Q9UHN6 1383 aa23.29■■□□□ 1.32
VARS-219ENST00000461328 KDM5AP29375 1690 aaKnown RBP23.29■■□□□ 1.32
VARS-219ENST00000461328 LTKP29376 864 aa23.29■■□□□ 1.32
VARS-219ENST00000461328 ADGRB3O60242 1522 aa23.28■■□□□ 1.32
VARS-219ENST00000461328 E9PCH4 1651 aa23.25■■□□□ 1.31
VARS-219ENST00000461328 UBAP1LF5GYI3 381 aa23.24■■□□□ 1.31
VARS-219ENST00000461328 NAIPQ13075 1403 aa23.2■■□□□ 1.3
VARS-219ENST00000461328 CHGAP10645 457 aaKnown RBP23.18■■□□□ 1.3
VARS-219ENST00000461328 STRCP1A6NGW2 1772 aa23.16■■□□□ 1.3
VARS-219ENST00000461328 TMEM131LA2VDJ0 1609 aa23.15■■□□□ 1.3
VARS-219ENST00000461328 HFM1A2PYH4 1435 aa23.15■■□□□ 1.3
VARS-219ENST00000461328 BCANQ96GW7 911 aa23.14■■□□□ 1.29
VARS-219ENST00000461328 MYO5BQ9ULV0 1848 aa23.13■■□□□ 1.29
VARS-219ENST00000461328 TOM1O60784 492 aa23.13■■□□□ 1.29
VARS-219ENST00000461328 HDGFP51858 240 aaKnown RBP23.13■■□□□ 1.29
VARS-219ENST00000461328 RIMS2Q9UQ26 1411 aa23.13■■□□□ 1.29
VARS-219ENST00000461328 LRRC7Q96NW7 1537 aa23.13■■□□□ 1.29
VARS-219ENST00000461328 PPP1R15AO75807 674 aaPredicted RBP23.12■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms