RNA–Protein interactions for RNA: ENST00000461294.2

PDGFRA-202, Transcript of platelet derived growth factor receptor alpha, humanhuman

TSL 3

Gene PDGFRA, Length 480 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFRA-202ENST00000461294 FMN1Q68DA7 1419 aa13.26□□□□□ -0.29
PDGFRA-202ENST00000461294 TNRQ92752 1358 aa13.25□□□□□ -0.29
PDGFRA-202ENST00000461294 TRIM52Q96A61 297 aa13.25□□□□□ -0.29
PDGFRA-202ENST00000461294 ATP1B4Q9UN42 357 aaPredicted RBP13.25□□□□□ -0.29
PDGFRA-202ENST00000461294 SAMD9LQ8IVG5 1584 aa13.24□□□□□ -0.29
PDGFRA-202ENST00000461294 SPAG9O60271 1321 aaKnown RBP13.24□□□□□ -0.29
PDGFRA-202ENST00000461294 FBXO31Q5XUX0 539 aaPredicted RBP13.24□□□□□ -0.29
PDGFRA-202ENST00000461294 ZNF772Q68DY9 489 aaPredicted RBP13.23□□□□□ -0.29
PDGFRA-202ENST00000461294 PLXNC1O60486 1568 aa13.23□□□□□ -0.29
PDGFRA-202ENST00000461294 PREX2Q70Z35 1606 aa13.22□□□□□ -0.29
PDGFRA-202ENST00000461294 XIRP1Q702N8 1843 aaKnown RBP13.22□□□□□ -0.29
PDGFRA-202ENST00000461294 A2MP01023 1474 aa13.22□□□□□ -0.29
PDGFRA-202ENST00000461294 FAM135AQ9P2D6 1515 aa13.2□□□□□ -0.3
PDGFRA-202ENST00000461294 UGGT1Q9NYU2 1555 aa13.2□□□□□ -0.3
PDGFRA-202ENST00000461294 NLRP1Q9C000 1473 aa13.18□□□□□ -0.3
PDGFRA-202ENST00000461294 RXRBP28702 533 aa13.18□□□□□ -0.3
PDGFRA-202ENST00000461294 JCADQ9P266 1359 aa13.18□□□□□ -0.3
PDGFRA-202ENST00000461294 ATP7AQ04656 1500 aa13.18□□□□□ -0.3
PDGFRA-202ENST00000461294 ROBO1Q9Y6N7 1651 aa13.18□□□□□ -0.3
PDGFRA-202ENST00000461294 MIA2Q96PC5 1412 aa13.17□□□□□ -0.3
PDGFRA-202ENST00000461294 PZPP20742 1482 aa13.16□□□□□ -0.3
PDGFRA-202ENST00000461294 HNRNPMP52272 730 aaKnown RBP eCLIP13.16□□□□□ -0.3
PDGFRA-202ENST00000461294 CDK12Q9NYV4 1490 aaPredicted RBP13.16□□□□□ -0.3
PDGFRA-202ENST00000461294 VPS8Q8N3P4 1428 aa13.15□□□□□ -0.3
PDGFRA-202ENST00000461294 CASKIN1Q8WXD9 1431 aa13.15□□□□□ -0.3
PDGFRA-202ENST00000461294 KDM5DQ9BY66 1539 aa13.15□□□□□ -0.3
PDGFRA-202ENST00000461294 FOXD1Q16676 465 aa13.15□□□□□ -0.3
PDGFRA-202ENST00000461294 ZNF777Q9ULD5 760 aaPredicted RBP13.15□□□□□ -0.3
PDGFRA-202ENST00000461294 ZC3H13Q5T200 1668 aaKnown RBP13.15□□□□□ -0.31
PDGFRA-202ENST00000461294 CDC42BPAQ5VT25 1732 aa13.14□□□□□ -0.31
PDGFRA-202ENST00000461294 INO80Q9ULG1 1556 aaPredicted RBP13.13□□□□□ -0.31
PDGFRA-202ENST00000461294 ZRANB1Q9UGI0 708 aa13.13□□□□□ -0.31
PDGFRA-202ENST00000461294 ADGBQ8N7X0 1667 aa13.12□□□□□ -0.31
PDGFRA-202ENST00000461294 FYCO1Q9BQS8 1478 aa13.12□□□□□ -0.31
PDGFRA-202ENST00000461294 MEX3CQ5U5Q3 659 aaKnown RBP13.12□□□□□ -0.31
PDGFRA-202ENST00000461294 SYCP2Q9BX26 1530 aa13.12□□□□□ -0.31
PDGFRA-202ENST00000461294 SPATA31A6Q5VVP1 1343 aa13.12□□□□□ -0.31
PDGFRA-202ENST00000461294 PHLPP1O60346 1717 aa13.11□□□□□ -0.31
PDGFRA-202ENST00000461294 KIAA1107Q9UPP5 1409 aa13.1□□□□□ -0.31
PDGFRA-202ENST00000461294 WASHC2CQ9Y4E1 1318 aa13.1□□□□□ -0.31
PDGFRA-202ENST00000461294 LRRC9Q6ZRR7 1453 aa13.1□□□□□ -0.31
PDGFRA-202ENST00000461294 TMEM94Q12767 1356 aa13.09□□□□□ -0.31
PDGFRA-202ENST00000461294 LRP6O75581 1613 aa13.09□□□□□ -0.31
PDGFRA-202ENST00000461294 LRRIQ1Q96JM4 1722 aa13.08□□□□□ -0.32
PDGFRA-202ENST00000461294 APLP2Q06481 763 aa13.08□□□□□ -0.32
PDGFRA-202ENST00000461294 CCDC18Q5T9S5 1454 aa13.08□□□□□ -0.32
PDGFRA-202ENST00000461294 SLAIN2Q9P270 581 aa13.07□□□□□ -0.32
PDGFRA-202ENST00000461294 DHX29Q7Z478 1369 aaKnown RBP13.07□□□□□ -0.32
PDGFRA-202ENST00000461294 PLEKHH2Q8IVE3 1493 aa13.06□□□□□ -0.32
PDGFRA-202ENST00000461294 SCAF11Q99590 1463 aaKnown RBP13.06□□□□□ -0.32
PDGFRA-202ENST00000461294 KIF3BO15066 747 aa13.06□□□□□ -0.32
PDGFRA-202ENST00000461294 FGD6Q6ZV73 1430 aa13.05□□□□□ -0.32
PDGFRA-202ENST00000461294 LTKP29376 864 aa13.05□□□□□ -0.32
PDGFRA-202ENST00000461294 TXNDC2Q86VQ3 553 aa13.05□□□□□ -0.32
PDGFRA-202ENST00000461294 SETBP1Q9Y6X0 1596 aa13.05□□□□□ -0.32
PDGFRA-202ENST00000461294 PROSER2Q86WR7 435 aaPredicted RBP13.04□□□□□ -0.32
PDGFRA-202ENST00000461294 GPATCH8Q9UKJ3 1502 aaKnown RBP13.03□□□□□ -0.32
PDGFRA-202ENST00000461294 COL16A1Q07092 1604 aaPredicted RBP13.03□□□□□ -0.32
PDGFRA-202ENST00000461294 KCNA6P17658 529 aa13.03□□□□□ -0.32
PDGFRA-202ENST00000461294 RBM33Q96EV2 1170 aaKnown RBP13.03□□□□□ -0.32
PDGFRA-202ENST00000461294 NUTM2BA6NNL0 878 aaPredicted RBP13.02□□□□□ -0.33
PDGFRA-202ENST00000461294 NUTM2EB1AL46 878 aaPredicted RBP13.02□□□□□ -0.33
PDGFRA-202ENST00000461294 NUTM2DQ5VT03 806 aaPredicted RBP13.02□□□□□ -0.33
PDGFRA-202ENST00000461294 NUTM2AQ8IVF1 878 aaPredicted RBP13.02□□□□□ -0.33
PDGFRA-202ENST00000461294 MAP3K1Q13233 1512 aa13.02□□□□□ -0.33
PDGFRA-202ENST00000461294 RBM6P78332 1123 aaKnown RBP13.01□□□□□ -0.33
PDGFRA-202ENST00000461294 CFDP1Q9UEE9 299 aaPredicted RBP13.01□□□□□ -0.33
PDGFRA-202ENST00000461294 UBR1Q8IWV7 1749 aa13□□□□□ -0.33
PDGFRA-202ENST00000461294 RTEL1-TNFRSF6BF6WH68 1400 aa13□□□□□ -0.33
PDGFRA-202ENST00000461294 RGS12O14924 1447 aa13□□□□□ -0.33
PDGFRA-202ENST00000461294 EID1Q9Y6B2 187 aa13□□□□□ -0.33
PDGFRA-202ENST00000461294 SLIT1O75093 1534 aa12.99□□□□□ -0.33
PDGFRA-202ENST00000461294 ARHGAP23Q9P227 1491 aa12.99□□□□□ -0.33
PDGFRA-202ENST00000461294 MSH6P52701 1360 aa12.99□□□□□ -0.33
PDGFRA-202ENST00000461294 AFF2P51816 1311 aa12.99□□□□□ -0.33
PDGFRA-202ENST00000461294 SHPRHQ149N8 1683 aa12.99□□□□□ -0.33
PDGFRA-202ENST00000461294 MTUS2Q5JR59 1369 aa12.98□□□□□ -0.33
PDGFRA-202ENST00000461294 ATAD2Q6PL18 1390 aa12.98□□□□□ -0.33
PDGFRA-202ENST00000461294 QTRT2Q9H974 415 aaKnown RBP12.98□□□□□ -0.33
PDGFRA-202ENST00000461294 CFAP65Q6ZU64 1925 aaKnown RBP12.98□□□□□ -0.33
PDGFRA-202ENST00000461294 PRDM15P57071 1507 aaPredicted RBP12.97□□□□□ -0.33
PDGFRA-202ENST00000461294 NCOA2Q15596 1464 aa12.97□□□□□ -0.33
PDGFRA-202ENST00000461294 ABCC3O15438 1527 aa12.95□□□□□ -0.34
PDGFRA-202ENST00000461294 CCDC125Q86Z20 511 aa12.95□□□□□ -0.34
PDGFRA-202ENST00000461294 TIAM1Q13009 1591 aa12.94□□□□□ -0.34
PDGFRA-202ENST00000461294 ERVK-7P63135 1459 aa12.94□□□□□ -0.34
PDGFRA-202ENST00000461294 NGLY1Q96IV0 654 aa12.94□□□□□ -0.34
PDGFRA-202ENST00000461294 MBD5Q9P267 1494 aa12.93□□□□□ -0.34
PDGFRA-202ENST00000461294 NKTRP30414 1462 aaKnown RBP12.92□□□□□ -0.34
PDGFRA-202ENST00000461294 CCNB3Q8WWL7 1395 aa12.92□□□□□ -0.34
PDGFRA-202ENST00000461294 AHDC1Q5TGY3 1603 aaPredicted RBP12.91□□□□□ -0.34
PDGFRA-202ENST00000461294 ZNF644Q9H582 1327 aaPredicted RBP12.91□□□□□ -0.34
PDGFRA-202ENST00000461294 KANK4Q5T7N3 995 aaPredicted RBP12.91□□□□□ -0.34
PDGFRA-202ENST00000461294 SLC26A8Q96RN1 970 aa12.91□□□□□ -0.34
PDGFRA-202ENST00000461294 EHBP1L1Q8N3D4 1523 aa12.91□□□□□ -0.34
PDGFRA-202ENST00000461294 TMEM2Q9UHN6 1383 aa12.9□□□□□ -0.34
PDGFRA-202ENST00000461294 TET3O43151 1660 aa12.89□□□□□ -0.35
PDGFRA-202ENST00000461294 LRP5O75197 1615 aa12.89□□□□□ -0.35
PDGFRA-202ENST00000461294 IFFO2Q5TF58 517 aa12.89□□□□□ -0.35
PDGFRA-202ENST00000461294 C8orf37Q96NL8 207 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms