RNA–Protein interactions for RNA: ENST00000461113.5

HDAC4-207, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 1,019 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-207ENST00000461113 LRRIQ1Q96JM4 1722 aa19.69■□□□□ 0.74
HDAC4-207ENST00000461113 CCDC18Q5T9S5 1454 aa19.67■□□□□ 0.74
HDAC4-207ENST00000461113 APLP2Q06481 763 aa19.67■□□□□ 0.74
HDAC4-207ENST00000461113 THEMISQ8N1K5 641 aaPredicted RBP19.66■□□□□ 0.74
HDAC4-207ENST00000461113 NPHP4O75161 1426 aaPredicted RBP19.66■□□□□ 0.74
HDAC4-207ENST00000461113 GPATCH8Q9UKJ3 1502 aaKnown RBP19.66■□□□□ 0.74
HDAC4-207ENST00000461113 CDC42BPAQ5VT25 1732 aa19.65■□□□□ 0.74
HDAC4-207ENST00000461113 VPS8Q8N3P4 1428 aa19.65■□□□□ 0.74
HDAC4-207ENST00000461113 KIAA1107Q9UPP5 1409 aa19.65■□□□□ 0.74
HDAC4-207ENST00000461113 CFDP1Q9UEE9 299 aaPredicted RBP19.64■□□□□ 0.73
HDAC4-207ENST00000461113 INO80Q9ULG1 1556 aaPredicted RBP19.64■□□□□ 0.73
HDAC4-207ENST00000461113 POLR1AO95602 1720 aaPredicted RBP19.64■□□□□ 0.73
HDAC4-207ENST00000461113 POTEAQ6S8J7 498 aa19.63■□□□□ 0.73
HDAC4-207ENST00000461113 LRRC7Q96NW7 1537 aa19.62■□□□□ 0.73
HDAC4-207ENST00000461113 MED14O60244 1454 aa19.6■□□□□ 0.73
HDAC4-207ENST00000461113 PLEKHH2Q8IVE3 1493 aa19.6■□□□□ 0.73
HDAC4-207ENST00000461113 PZPP20742 1482 aa19.58■□□□□ 0.72
HDAC4-207ENST00000461113 MIA2Q96PC5 1412 aa19.58■□□□□ 0.72
HDAC4-207ENST00000461113 DHX29Q7Z478 1369 aaKnown RBP19.57■□□□□ 0.72
HDAC4-207ENST00000461113 KIF3BO15066 747 aa19.57■□□□□ 0.72
HDAC4-207ENST00000461113 FAM135AQ9P2D6 1515 aa19.56■□□□□ 0.72
HDAC4-207ENST00000461113 MTUS2Q5JR59 1369 aa19.56■□□□□ 0.72
HDAC4-207ENST00000461113 CCNB3Q8WWL7 1395 aa19.56■□□□□ 0.72
HDAC4-207ENST00000461113 WASHC2CQ9Y4E1 1318 aa19.55■□□□□ 0.72
HDAC4-207ENST00000461113 UGGT1Q9NYU2 1555 aa19.55■□□□□ 0.72
HDAC4-207ENST00000461113 NLRP1Q9C000 1473 aa19.54■□□□□ 0.72
HDAC4-207ENST00000461113 ZNF644Q9H582 1327 aaPredicted RBP19.54■□□□□ 0.72
HDAC4-207ENST00000461113 DEPDC5O75140 1603 aa19.54■□□□□ 0.72
HDAC4-207ENST00000461113 RNF17Q9BXT8 1623 aaKnown RBP19.54■□□□□ 0.72
HDAC4-207ENST00000461113 ADGBQ8N7X0 1667 aa19.52■□□□□ 0.72
HDAC4-207ENST00000461113 KDM5DQ9BY66 1539 aa19.51■□□□□ 0.71
HDAC4-207ENST00000461113 STRCP1A6NGW2 1772 aa19.5■□□□□ 0.71
HDAC4-207ENST00000461113 RTEL1-TNFRSF6BF6WH68 1400 aa19.5■□□□□ 0.71
HDAC4-207ENST00000461113 IQGAP1P46940 1657 aa19.49■□□□□ 0.71
HDAC4-207ENST00000461113 SYNMO15061 1565 aa19.49■□□□□ 0.71
HDAC4-207ENST00000461113 MBD5Q9P267 1494 aa19.48■□□□□ 0.71
HDAC4-207ENST00000461113 FAM135BQ49AJ0 1406 aa19.45■□□□□ 0.7
HDAC4-207ENST00000461113 MAP3K1Q13233 1512 aa19.43■□□□□ 0.7
HDAC4-207ENST00000461113 EHBP1L1Q8N3D4 1523 aa19.41■□□□□ 0.7
HDAC4-207ENST00000461113 TIAM1Q13009 1591 aa19.4■□□□□ 0.7
HDAC4-207ENST00000461113 LTKP29376 864 aa19.39■□□□□ 0.69
HDAC4-207ENST00000461113 LRRC9Q6ZRR7 1453 aa19.38■□□□□ 0.69
HDAC4-207ENST00000461113 TXNDC2Q86VQ3 553 aa19.38■□□□□ 0.69
HDAC4-207ENST00000461113 SETD1AO15047 1707 aaKnown RBP19.37■□□□□ 0.69
HDAC4-207ENST00000461113 SCAF11Q99590 1463 aaKnown RBP19.37■□□□□ 0.69
HDAC4-207ENST00000461113 UPF1Q92900 1129 aaKnown RBP eCLIP19.37■□□□□ 0.69
HDAC4-207ENST00000461113 KANK4Q5T7N3 995 aaPredicted RBP19.36■□□□□ 0.69
HDAC4-207ENST00000461113 ZC3H13Q5T200 1668 aaKnown RBP19.35■□□□□ 0.69
HDAC4-207ENST00000461113 TMEM94Q12767 1356 aa19.34■□□□□ 0.69
HDAC4-207ENST00000461113 ERVK-7P63135 1459 aa19.34■□□□□ 0.69
HDAC4-207ENST00000461113 CCDC141Q6ZP82 1450 aa19.34■□□□□ 0.69
HDAC4-207ENST00000461113 NCOA2Q15596 1464 aa19.31■□□□□ 0.68
HDAC4-207ENST00000461113 RSPH4AQ5TD94 716 aa19.31■□□□□ 0.68
HDAC4-207ENST00000461113 RBM33Q96EV2 1170 aaKnown RBP19.31■□□□□ 0.68
HDAC4-207ENST00000461113 EID1Q9Y6B2 187 aa19.31■□□□□ 0.68
HDAC4-207ENST00000461113 ABCC3O15438 1527 aa19.3■□□□□ 0.68
HDAC4-207ENST00000461113 XIRP1Q702N8 1843 aaKnown RBP19.3■□□□□ 0.68
HDAC4-207ENST00000461113 TRIM52Q96A61 297 aa19.29■□□□□ 0.68
HDAC4-207ENST00000461113 ARHGAP23Q9P227 1491 aa19.28■□□□□ 0.68
HDAC4-207ENST00000461113 TSPY4P0CV99 314 aa19.28■□□□□ 0.68
HDAC4-207ENST00000461113 TSPY10P0CW01 314 aa19.28■□□□□ 0.68
HDAC4-207ENST00000461113 PROSER2Q86WR7 435 aaPredicted RBP19.28■□□□□ 0.68
HDAC4-207ENST00000461113 JCADQ9P266 1359 aa19.28■□□□□ 0.68
HDAC4-207ENST00000461113 ROBO1Q9Y6N7 1651 aa19.27■□□□□ 0.68
HDAC4-207ENST00000461113 KCNA6P17658 529 aa19.27■□□□□ 0.68
HDAC4-207ENST00000461113 SLIT1O75093 1534 aa19.26■□□□□ 0.67
HDAC4-207ENST00000461113 UBR1Q8IWV7 1749 aa19.25■□□□□ 0.67
HDAC4-207ENST00000461113 CAMSAP2Q08AD1 1489 aa19.25■□□□□ 0.67
HDAC4-207ENST00000461113 ZNF772Q68DY9 489 aaPredicted RBP19.23■□□□□ 0.67
HDAC4-207ENST00000461113 SLAIN2Q9P270 581 aa19.23■□□□□ 0.67
HDAC4-207ENST00000461113 MEX3CQ5U5Q3 659 aaKnown RBP19.22■□□□□ 0.67
HDAC4-207ENST00000461113 SLC26A8Q96RN1 970 aa19.22■□□□□ 0.67
HDAC4-207ENST00000461113 TMEM2Q9UHN6 1383 aa19.2■□□□□ 0.66
HDAC4-207ENST00000461113 MYOM3Q5VTT5 1437 aa19.19■□□□□ 0.66
HDAC4-207ENST00000461113 PPARGC1BQ86YN6 1023 aaKnown RBP19.19■□□□□ 0.66
HDAC4-207ENST00000461113 STAG3Q9UJ98 1225 aa19.19■□□□□ 0.66
HDAC4-207ENST00000461113 MSH6P52701 1360 aa19.19■□□□□ 0.66
HDAC4-207ENST00000461113 RXRBP28702 533 aa19.18■□□□□ 0.66
HDAC4-207ENST00000461113 LRP6O75581 1613 aa19.18■□□□□ 0.66
HDAC4-207ENST00000461113 SPATA31A6Q5VVP1 1343 aa19.17■□□□□ 0.66
HDAC4-207ENST00000461113 PRDM15P57071 1507 aaPredicted RBP19.16■□□□□ 0.66
HDAC4-207ENST00000461113 PHLPP1O60346 1717 aa19.15■□□□□ 0.66
HDAC4-207ENST00000461113 ARHGEF5Q12774 1597 aa19.15■□□□□ 0.66
HDAC4-207ENST00000461113 MROH1Q8NDA8 1641 aa19.14■□□□□ 0.66
HDAC4-207ENST00000461113 SRCAPQ6ZRS2 3230 aa19.13■□□□□ 0.65
HDAC4-207ENST00000461113 ARHGAP31Q2M1Z3 1444 aa19.12■□□□□ 0.65
HDAC4-207ENST00000461113 NKTRP30414 1462 aaKnown RBP19.11■□□□□ 0.65
HDAC4-207ENST00000461113 BCANQ96GW7 911 aa19.11■□□□□ 0.65
HDAC4-207ENST00000461113 FGD6Q6ZV73 1430 aa19.1■□□□□ 0.65
HDAC4-207ENST00000461113 IDI1Q13907 227 aa19.1■□□□□ 0.65
HDAC4-207ENST00000461113 FAM50AQ14320 339 aaKnown RBP19.1■□□□□ 0.65
HDAC4-207ENST00000461113 CEP152O94986 1710 aa19.1■□□□□ 0.65
HDAC4-207ENST00000461113 TET3O43151 1660 aa19.1■□□□□ 0.65
HDAC4-207ENST00000461113 COL16A1Q07092 1604 aaPredicted RBP19.1■□□□□ 0.65
HDAC4-207ENST00000461113 PIK3C2BO00750 1634 aa19.09■□□□□ 0.65
HDAC4-207ENST00000461113 EIF2AK4Q9P2K8 1649 aaKnown RBP19.09■□□□□ 0.65
HDAC4-207ENST00000461113 CFAP65Q6ZU64 1925 aaKnown RBP19.08■□□□□ 0.65
HDAC4-207ENST00000461113 EFCAB6Q5THR3 1501 aa19.07■□□□□ 0.64
HDAC4-207ENST00000461113 NUTM2BA6NNL0 878 aaPredicted RBP19.07■□□□□ 0.64
HDAC4-207ENST00000461113 NUTM2EB1AL46 878 aaPredicted RBP19.07■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms