RNA–Protein interactions for RNA: ENST00000459775.5

USP39-210, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2

Gene USP39, Length 2,148 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-210ENST00000459775 ANKRD50Q9ULJ7 1429 aa15.25■□□□□ 0.03
USP39-210ENST00000459775 ADGBQ8N7X0 1667 aa15.25■□□□□ 0.03
USP39-210ENST00000459775 ATP7AQ04656 1500 aa15.24■□□□□ 0.03
USP39-210ENST00000459775 MAST1Q9Y2H9 1570 aa15.24■□□□□ 0.03
USP39-210ENST00000459775 YEATS2Q9ULM3 1422 aa15.24■□□□□ 0.03
USP39-210ENST00000459775 DHX57Q6P158 1386 aaKnown RBP15.23■□□□□ 0.03
USP39-210ENST00000459775 GCC2Q8IWJ2 1684 aa15.23■□□□□ 0.03
USP39-210ENST00000459775 DMRT2Q9Y5R5 561 aa15.22■□□□□ 0.03
USP39-210ENST00000459775 KDM5CP41229 1560 aa15.22■□□□□ 0.03
USP39-210ENST00000459775 INO80Q9ULG1 1556 aaPredicted RBP15.22■□□□□ 0.03
USP39-210ENST00000459775 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.22■□□□□ 0.033e-6■□□□□ 10.3
USP39-210ENST00000459775 RTEL1-TNFRSF6BF6WH68 1400 aa15.21■□□□□ 0.03
USP39-210ENST00000459775 KIDINS220Q9ULH0 1771 aa15.21■□□□□ 0.03
USP39-210ENST00000459775 HSPA2P54652 639 aa15.2■□□□□ 0.02
USP39-210ENST00000459775 FOXD1Q16676 465 aa15.2■□□□□ 0.02
USP39-210ENST00000459775 MLH3Q9UHC1 1453 aa15.19■□□□□ 0.02
USP39-210ENST00000459775 PLXNC1O60486 1568 aa15.18■□□□□ 0.02
USP39-210ENST00000459775 ATP10AO60312 1499 aa15.18■□□□□ 0.02
USP39-210ENST00000459775 SIGLEC1Q9BZZ2 1709 aa15.18■□□□□ 0.02
USP39-210ENST00000459775 SOCS7O14512 581 aa15.18■□□□□ 0.02
USP39-210ENST00000459775 KIF3BO15066 747 aa15.18■□□□□ 0.02
USP39-210ENST00000459775 HRCP23327 699 aa15.18■□□□□ 0.02
USP39-210ENST00000459775 ABCA6Q8N139 1617 aa15.17■□□□□ 0.02
USP39-210ENST00000459775 IQSEC2Q5JU85 1478 aa15.17■□□□□ 0.02
USP39-210ENST00000459775 DISP3Q9P2K9 1392 aa15.16■□□□□ 0.02
USP39-210ENST00000459775 DUOX2Q9NRD8 1548 aa15.16■□□□□ 0.02
USP39-210ENST00000459775 MPHOSPH9Q99550 1183 aa15.16■□□□□ 0.02
USP39-210ENST00000459775 NUP155O75694 1391 aa15.16■□□□□ 0.02
USP39-210ENST00000459775 DHX29Q7Z478 1369 aaKnown RBP15.16■□□□□ 0.02
USP39-210ENST00000459775 SPATA31D1Q6ZQQ2 1576 aa15.15■□□□□ 0.02
USP39-210ENST00000459775 A2MP01023 1474 aa15.14■□□□□ 0.01
USP39-210ENST00000459775 UHRF1BP1Q6BDS2 1440 aa15.14■□□□□ 0.01
USP39-210ENST00000459775 TIMELESSQ9UNS1 1208 aa15.14■□□□□ 0.01
USP39-210ENST00000459775 REREQ9P2R6 1566 aa15.14■□□□□ 0.01
USP39-210ENST00000459775 PTPRTO14522 1441 aa15.14■□□□□ 0.01
USP39-210ENST00000459775 SLC4A1APQ9BWU0 796 aaKnown RBP15.14■□□□□ 0.01
USP39-210ENST00000459775 DIP2CQ9Y2E4 1556 aa15.13■□□□□ 0.01
USP39-210ENST00000459775 GGT6Q6P531 493 aa15.13■□□□□ 0.01
USP39-210ENST00000459775 SIN3AQ96ST3 1273 aa15.12■□□□□ 0.01
USP39-210ENST00000459775 PZPP20742 1482 aa15.12■□□□□ 0.01
USP39-210ENST00000459775 ERBINQ96RT1 1412 aa15.12■□□□□ 0.01
USP39-210ENST00000459775 STRCQ7RTU9 1775 aa15.11■□□□□ 0.01
USP39-210ENST00000459775 PKD2Q13563 968 aa15.1■□□□□ 0.01
USP39-210ENST00000459775 MLECQ14165 292 aa15.1■□□□□ 0.01
USP39-210ENST00000459775 NEUROD1Q13562 356 aa15.08■□□□□ 0.01
USP39-210ENST00000459775 AGLP35573 1532 aa15.05■□□□□ 0
USP39-210ENST00000459775 SETD1BQ9UPS6 1966 aaKnown RBP15.05■□□□□ 0
USP39-210ENST00000459775 FAM135AQ9P2D6 1515 aa15.05■□□□□ -0
USP39-210ENST00000459775 ILDR2Q71H61 639 aa15.05■□□□□ -0
USP39-210ENST00000459775 BCL11AQ9H165 835 aa15.04■□□□□ -0
USP39-210ENST00000459775 UNC13BO14795 1591 aa15.04■□□□□ -0
USP39-210ENST00000459775 CNTLNQ9NXG0 1405 aa15.04■□□□□ -0
USP39-210ENST00000459775 MROH1Q8NDA8 1641 aa15.04■□□□□ -0
USP39-210ENST00000459775 C3P01024 1663 aa15.02■□□□□ -0
USP39-210ENST00000459775 LTBP4Q8N2S1 1624 aa15.02□□□□□ -0.01
USP39-210ENST00000459775 KDM5DQ9BY66 1539 aa15.01□□□□□ -0.01
USP39-210ENST00000459775 WASHC2CQ9Y4E1 1318 aa15.01□□□□□ -0.01
USP39-210ENST00000459775 EIF2AK4Q9P2K8 1649 aaKnown RBP15□□□□□ -0.01
USP39-210ENST00000459775 DEPDC5O75140 1603 aa14.99□□□□□ -0.01
USP39-210ENST00000459775 ANKRD30BQ9BXX2 1392 aa14.99□□□□□ -0.01
USP39-210ENST00000459775 KANK1Q14678 1352 aa14.99□□□□□ -0.01
USP39-210ENST00000459775 ESF1Q9H501 851 aaKnown RBP14.99□□□□□ -0.01
USP39-210ENST00000459775 MROH2AA6NES4 1674 aa14.98□□□□□ -0.01
USP39-210ENST00000459775 IQGAP3Q86VI3 1631 aa14.98□□□□□ -0.01
USP39-210ENST00000459775 NPATQ14207 1427 aa14.98□□□□□ -0.01
USP39-210ENST00000459775 HOMEZQ8IX15 550 aa14.98□□□□□ -0.01
USP39-210ENST00000459775 PRDM15P57071 1507 aaPredicted RBP14.98□□□□□ -0.01
USP39-210ENST00000459775 CEBPAP49715 358 aaPredicted RBP14.97□□□□□ -0.01
USP39-210ENST00000459775 RNF17Q9BXT8 1623 aaKnown RBP14.97□□□□□ -0.01
USP39-210ENST00000459775 VWDEQ8N2E2 1590 aa14.96□□□□□ -0.01
USP39-210ENST00000459775 CLSPNQ9HAW4 1339 aa14.96□□□□□ -0.01
USP39-210ENST00000459775 PLA2R1Q13018 1463 aa14.95□□□□□ -0.02
USP39-210ENST00000459775 ACIN1Q9UKV3 1341 aaKnown RBP14.95□□□□□ -0.02
USP39-210ENST00000459775 CEP152O94986 1710 aa14.94□□□□□ -0.02
USP39-210ENST00000459775 ABCC3O15438 1527 aa14.94□□□□□ -0.02
USP39-210ENST00000459775 FBXO31Q5XUX0 539 aaPredicted RBP14.93□□□□□ -0.02
USP39-210ENST00000459775 E9PCH4 1651 aa14.93□□□□□ -0.02
USP39-210ENST00000459775 ZNF142P52746 1687 aaPredicted RBP14.92□□□□□ -0.02
USP39-210ENST00000459775 ZEB1P37275 1124 aaPredicted RBP14.91□□□□□ -0.02
USP39-210ENST00000459775 CAMSAP1Q5T5Y3 1602 aa14.91□□□□□ -0.02
USP39-210ENST00000459775 TET3O43151 1660 aa14.89□□□□□ -0.03
USP39-210ENST00000459775 KLHL34Q8N239 644 aa14.89□□□□□ -0.03
USP39-210ENST00000459775 EFCAB6Q5THR3 1501 aa14.89□□□□□ -0.03
USP39-210ENST00000459775 UGGT1Q9NYU2 1555 aa14.89□□□□□ -0.03
USP39-210ENST00000459775 RGL3Q3MIN7 710 aa14.89□□□□□ -0.03
USP39-210ENST00000459775 LMTK2Q8IWU2 1503 aa14.88□□□□□ -0.03
USP39-210ENST00000459775 L3MBTL2Q969R5 705 aa14.87□□□□□ -0.03
USP39-210ENST00000459775 CFAP65Q6ZU64 1925 aaKnown RBP14.87□□□□□ -0.03
USP39-210ENST00000459775 CLTCQ00610 1675 aaKnown RBP14.86□□□□□ -0.03
USP39-210ENST00000459775 TONSLQ96HA7 1378 aa14.86□□□□□ -0.03
USP39-210ENST00000459775 RPRD2Q5VT52 1461 aaKnown RBP14.86□□□□□ -0.03
USP39-210ENST00000459775 MYO3AQ8NEV4 1616 aa14.86□□□□□ -0.03
USP39-210ENST00000459775 CCDC144AA2RUR9 1427 aa14.85□□□□□ -0.03
USP39-210ENST00000459775 TULP1O00294 542 aaPredicted RBP14.85□□□□□ -0.03
USP39-210ENST00000459775 ZMYM3Q14202 1370 aa14.84□□□□□ -0.03
USP39-210ENST00000459775 CEP170BQ9Y4F5 1589 aaPredicted RBP14.83□□□□□ -0.03
USP39-210ENST00000459775 PPP6R1Q9UPN7 881 aa14.83□□□□□ -0.04
USP39-210ENST00000459775 CHGAP10645 457 aaKnown RBP14.83□□□□□ -0.04
USP39-210ENST00000459775 KDM2AQ9Y2K7 1162 aa14.83□□□□□ -0.04
USP39-210ENST00000459775 UBAP1LF5GYI3 381 aa14.81□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms