RNA–Protein interactions for RNA: ENST00000458610.6

CD28-203, Transcript of CD28 molecule, humanhuman

TSL 1 (best) BASIC

Gene CD28, Length 705 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD28-203ENST00000458610 FAM135AQ9P2D6 1515 aa24.6■■□□□ 1.53
CD28-203ENST00000458610 ADGRL2O95490 1459 aa24.58■■□□□ 1.53
CD28-203ENST00000458610 EIF2AK4Q9P2K8 1649 aaKnown RBP24.57■■□□□ 1.52
CD28-203ENST00000458610 MROH2AA6NES4 1674 aa24.57■■□□□ 1.52
CD28-203ENST00000458610 NPATQ14207 1427 aa24.56■■□□□ 1.52
CD28-203ENST00000458610 ITGAEP38570 1179 aa24.56■■□□□ 1.52
CD28-203ENST00000458610 RRBP1Q9P2E9 1410 aaKnown RBP24.55■■□□□ 1.52
CD28-203ENST00000458610 SETD1BQ9UPS6 1966 aaKnown RBP24.54■■□□□ 1.52
CD28-203ENST00000458610 ROCK1Q13464 1354 aa24.54■■□□□ 1.52
CD28-203ENST00000458610 C3P01024 1663 aa24.53■■□□□ 1.52
CD28-203ENST00000458610 CLTCQ00610 1675 aaKnown RBP24.53■■□□□ 1.52
CD28-203ENST00000458610 KDM5DQ9BY66 1539 aa24.53■■□□□ 1.52
CD28-203ENST00000458610 KANK1Q14678 1352 aa24.53■■□□□ 1.52
CD28-203ENST00000458610 UHRF1BP1Q6BDS2 1440 aa24.52■■□□□ 1.52
CD28-203ENST00000458610 LMTK3Q96Q04 1460 aa24.51■■□□□ 1.51
CD28-203ENST00000458610 RNF17Q9BXT8 1623 aaKnown RBP24.5■■□□□ 1.51
CD28-203ENST00000458610 GRWD1Q9BQ67 446 aaKnown RBP eCLIP24.5■■□□□ 1.51
CD28-203ENST00000458610 PTPRKQ15262 1439 aa24.5■■□□□ 1.51
CD28-203ENST00000458610 ANKRD50Q9ULJ7 1429 aa24.5■■□□□ 1.51
CD28-203ENST00000458610 HSPA2P54652 639 aa24.46■■□□□ 1.51
CD28-203ENST00000458610 PREX1Q8TCU6 1659 aa24.46■■□□□ 1.51
CD28-203ENST00000458610 PZPP20742 1482 aa24.44■■□□□ 1.5
CD28-203ENST00000458610 ABCC3O15438 1527 aa24.42■■□□□ 1.5
CD28-203ENST00000458610 FBXO31Q5XUX0 539 aaPredicted RBP24.42■■□□□ 1.5
CD28-203ENST00000458610 ZC3H13Q5T200 1668 aaKnown RBP24.42■■□□□ 1.5
CD28-203ENST00000458610 TNRQ92752 1358 aa24.4■■□□□ 1.5
CD28-203ENST00000458610 PRDM15P57071 1507 aaPredicted RBP24.4■■□□□ 1.5
CD28-203ENST00000458610 MROH1Q8NDA8 1641 aa24.39■■□□□ 1.5
CD28-203ENST00000458610 DMRT2Q9Y5R5 561 aa24.37■■□□□ 1.49
CD28-203ENST00000458610 ARHGAP31Q2M1Z3 1444 aa24.36■■□□□ 1.49
CD28-203ENST00000458610 DEPDC5O75140 1603 aa24.36■■□□□ 1.49
CD28-203ENST00000458610 LMTK2Q8IWU2 1503 aa24.32■■□□□ 1.48
CD28-203ENST00000458610 CAMSAP1Q5T5Y3 1602 aa24.3■■□□□ 1.48
CD28-203ENST00000458610 A2ML1A8K2U0 1454 aa24.3■■□□□ 1.48
CD28-203ENST00000458610 NLRP1Q9C000 1473 aa24.3■■□□□ 1.48
CD28-203ENST00000458610 VWDEQ8N2E2 1590 aa24.29■■□□□ 1.48
CD28-203ENST00000458610 THEMISQ8N1K5 641 aaPredicted RBP24.29■■□□□ 1.48
CD28-203ENST00000458610 CEP152O94986 1710 aa24.29■■□□□ 1.48
CD28-203ENST00000458610 ERVK-7P63135 1459 aa24.28■■□□□ 1.48
CD28-203ENST00000458610 NUP155O75694 1391 aa24.28■■□□□ 1.48
CD28-203ENST00000458610 MYO3AQ8NEV4 1616 aa24.28■■□□□ 1.48
CD28-203ENST00000458610 SPATA31D1Q6ZQQ2 1576 aa24.26■■□□□ 1.47
CD28-203ENST00000458610 CEP170BQ9Y4F5 1589 aaPredicted RBP24.26■■□□□ 1.47
CD28-203ENST00000458610 PKD2Q13563 968 aa24.26■■□□□ 1.47
CD28-203ENST00000458610 NAIPQ13075 1403 aa24.25■■□□□ 1.47
CD28-203ENST00000458610 HFM1A2PYH4 1435 aa24.24■■□□□ 1.47
CD28-203ENST00000458610 UNC13BO14795 1591 aa24.23■■□□□ 1.47
CD28-203ENST00000458610 ZNF142P52746 1687 aaPredicted RBP24.23■■□□□ 1.47
CD28-203ENST00000458610 RPRD2Q5VT52 1461 aaKnown RBP24.22■■□□□ 1.47
CD28-203ENST00000458610 PLA2R1Q13018 1463 aa24.21■■□□□ 1.47
CD28-203ENST00000458610 ACIN1Q9UKV3 1341 aaKnown RBP24.21■■□□□ 1.47
CD28-203ENST00000458610 SLC52A1Q9NWF4 448 aa24.21■■□□□ 1.47
CD28-203ENST00000458610 EFCAB6Q5THR3 1501 aa24.2■■□□□ 1.46
CD28-203ENST00000458610 ANKLE2Q86XL3 938 aa24.19■■□□□ 1.46
CD28-203ENST00000458610 STAG3Q9UJ98 1225 aa24.19■■□□□ 1.46
CD28-203ENST00000458610 TRIM52Q96A61 297 aa24.18■■□□□ 1.46
CD28-203ENST00000458610 PTPRTO14522 1441 aa24.18■■□□□ 1.46
CD28-203ENST00000458610 UGGT1Q9NYU2 1555 aa24.17■■□□□ 1.46
CD28-203ENST00000458610 NCKAP5LQ9HCH0 1330 aa24.17■■□□□ 1.46
CD28-203ENST00000458610 TET3O43151 1660 aa24.16■■□□□ 1.46
CD28-203ENST00000458610 NOS1P29475 1434 aa24.16■■□□□ 1.46
CD28-203ENST00000458610 CFAP65Q6ZU64 1925 aaKnown RBP24.16■■□□□ 1.46
CD28-203ENST00000458610 IQGAP3Q86VI3 1631 aa24.14■■□□□ 1.46
CD28-203ENST00000458610 IDI1Q13907 227 aa24.14■■□□□ 1.45
CD28-203ENST00000458610 GCC2Q8IWJ2 1684 aa24.13■■□□□ 1.45
CD28-203ENST00000458610 STRCQ7RTU9 1775 aa24.13■■□□□ 1.45
CD28-203ENST00000458610 EID1Q9Y6B2 187 aa24.09■■□□□ 1.45
CD28-203ENST00000458610 SLC4A1APQ9BWU0 796 aaKnown RBP24.07■■□□□ 1.44
CD28-203ENST00000458610 HDGFP51858 240 aaKnown RBP24.06■■□□□ 1.44
CD28-203ENST00000458610 SETD5Q9C0A6 1442 aa24.05■■□□□ 1.44
CD28-203ENST00000458610 TXNDC2Q86VQ3 553 aa24.05■■□□□ 1.44
CD28-203ENST00000458610 SYNMO15061 1565 aa24.03■■□□□ 1.44
CD28-203ENST00000458610 E9PCH4 1651 aa24.02■■□□□ 1.44
CD28-203ENST00000458610 TMEM2Q9UHN6 1383 aa24.02■■□□□ 1.44
CD28-203ENST00000458610 CHGAP10645 457 aaKnown RBP24.01■■□□□ 1.43
CD28-203ENST00000458610 PIK3C2BO00750 1634 aa24.01■■□□□ 1.43
CD28-203ENST00000458610 UBR1Q8IWV7 1749 aa24.01■■□□□ 1.43
CD28-203ENST00000458610 NPHP4O75161 1426 aaPredicted RBP24■■□□□ 1.43
CD28-203ENST00000458610 KDM5AP29375 1690 aaKnown RBP23.99■■□□□ 1.43
CD28-203ENST00000458610 MED14O60244 1454 aa23.99■■□□□ 1.43
CD28-203ENST00000458610 SLIT1O75093 1534 aa23.99■■□□□ 1.43
CD28-203ENST00000458610 CERKQ8TCT0 537 aa23.98■■□□□ 1.43
CD28-203ENST00000458610 ARHGAP23Q9P227 1491 aa23.98■■□□□ 1.43
CD28-203ENST00000458610 SCAF11Q99590 1463 aaKnown RBP23.97■■□□□ 1.43
CD28-203ENST00000458610 HRCP23327 699 aa23.96■■□□□ 1.43
CD28-203ENST00000458610 LTKP29376 864 aa23.96■■□□□ 1.43
CD28-203ENST00000458610 MPHOSPH9Q99550 1183 aa23.96■■□□□ 1.43
CD28-203ENST00000458610 ADGRB3O60242 1522 aa23.95■■□□□ 1.43
CD28-203ENST00000458610 ABCF1Q8NE71 845 aaKnown RBP eCLIP23.95■■□□□ 1.42
CD28-203ENST00000458610 POLR1AO95602 1720 aaPredicted RBP23.95■■□□□ 1.42
CD28-203ENST00000458610 RAB3GAP2Q9H2M9 1393 aa23.92■■□□□ 1.42
CD28-203ENST00000458610 NEURL4Q96JN8 1562 aa23.91■■□□□ 1.42
CD28-203ENST00000458610 PPP1R15AO75807 674 aaPredicted RBP23.91■■□□□ 1.42
CD28-203ENST00000458610 ZNF335Q9H4Z2 1342 aaPredicted RBP23.9■■□□□ 1.42
CD28-203ENST00000458610 BCANQ96GW7 911 aa23.9■■□□□ 1.42
CD28-203ENST00000458610 SPHKAPQ2M3C7 1700 aa23.87■■□□□ 1.41
CD28-203ENST00000458610 RIMS2Q9UQ26 1411 aa23.87■■□□□ 1.41
CD28-203ENST00000458610 ZNF326Q5BKZ1 582 aaKnown RBP23.87■■□□□ 1.41
CD28-203ENST00000458610 FBXO41Q8TF61 875 aa23.87■■□□□ 1.41
CD28-203ENST00000458610 TMEM131LA2VDJ0 1609 aa23.87■■□□□ 1.41
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms