RNA–Protein interactions for RNA: ENST00000456385.5

CLIP4-208, Transcript of CAP-Gly domain containing linker protein family member 4, humanhuman

TSL 2

Gene CLIP4, Length 2,311 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4-208ENST00000456385 PARD3Q8TEW0 1356 aa13.52□□□□□ -0.25
CLIP4-208ENST00000456385 CC2D1BQ5T0F9 858 aaKnown RBP13.51□□□□□ -0.25
CLIP4-208ENST00000456385 FAM161AQ3B820 660 aa13.5□□□□□ -0.25
CLIP4-208ENST00000456385 AEBP2Q6ZN18 517 aaPredicted RBP13.5□□□□□ -0.25
CLIP4-208ENST00000456385 ZNF777Q9ULD5 760 aaPredicted RBP13.5□□□□□ -0.25
CLIP4-208ENST00000456385 PER1O15534 1290 aaPredicted RBP13.5□□□□□ -0.25
CLIP4-208ENST00000456385 RGS3P49796 1198 aa13.48□□□□□ -0.25
CLIP4-208ENST00000456385 CENPQQ7L2Z9 268 aaPredicted RBP13.48□□□□□ -0.25
CLIP4-208ENST00000456385 CFDP1Q9UEE9 299 aaPredicted RBP13.48□□□□□ -0.25
CLIP4-208ENST00000456385 E9PCH4 1651 aa13.47□□□□□ -0.25
CLIP4-208ENST00000456385 FAM43AQ8N2R8 423 aa13.47□□□□□ -0.25
CLIP4-208ENST00000456385 KIAA0586Q9BVV6 1533 aa13.47□□□□□ -0.25
CLIP4-208ENST00000456385 IQGAP2Q13576 1575 aa13.46□□□□□ -0.26
CLIP4-208ENST00000456385 BLMP54132 1417 aaPredicted RBP13.45□□□□□ -0.26
CLIP4-208ENST00000456385 RSPH6AQ9H0K4 717 aa13.45□□□□□ -0.26
CLIP4-208ENST00000456385 NUP155O75694 1391 aa13.45□□□□□ -0.26
CLIP4-208ENST00000456385 CAMSAP2Q08AD1 1489 aa13.45□□□□□ -0.26
CLIP4-208ENST00000456385 POGKQ9P215 609 aa13.44□□□□□ -0.26
CLIP4-208ENST00000456385 ADAMTS8Q9UP79 889 aa13.44□□□□□ -0.26
CLIP4-208ENST00000456385 ANKRD50Q9ULJ7 1429 aa13.43□□□□□ -0.26
CLIP4-208ENST00000456385 NBPF1Q3BBV0 1214 aa13.42□□□□□ -0.26
CLIP4-208ENST00000456385 PRG4Q92954 1404 aaPredicted RBP13.42□□□□□ -0.26
CLIP4-208ENST00000456385 NUP153P49790 1475 aaKnown RBP13.42□□□□□ -0.26
CLIP4-208ENST00000456385 DUSP27Q5VZP5 1158 aa13.41□□□□□ -0.26
CLIP4-208ENST00000456385 PANK3Q9H999 370 aa13.41□□□□□ -0.26
CLIP4-208ENST00000456385 ARHGEF12Q9NZN5 1544 aa13.41□□□□□ -0.26
CLIP4-208ENST00000456385 ANKRD30AQ9BXX3 1397 aa13.4□□□□□ -0.26
CLIP4-208ENST00000456385 PLEKHH1Q9ULM0 1364 aa13.4□□□□□ -0.26
CLIP4-208ENST00000456385 RRAGDQ9NQL2 400 aaPredicted RBP13.4□□□□□ -0.26
CLIP4-208ENST00000456385 ZMYM4Q5VZL5 1548 aa13.4□□□□□ -0.26
CLIP4-208ENST00000456385 ZNF608Q9ULD9 1512 aaPredicted RBP13.39□□□□□ -0.27
CLIP4-208ENST00000456385 DISP3Q9P2K9 1392 aa13.39□□□□□ -0.27
CLIP4-208ENST00000456385 USP19O94966 1318 aa13.39□□□□□ -0.27
CLIP4-208ENST00000456385 ADGRL2O95490 1459 aa13.39□□□□□ -0.27
CLIP4-208ENST00000456385 GPATCH8Q9UKJ3 1502 aaKnown RBP13.38□□□□□ -0.27
CLIP4-208ENST00000456385 SEC24BO95487 1268 aa13.38□□□□□ -0.27
CLIP4-208ENST00000456385 RGL3Q3MIN7 710 aa13.38□□□□□ -0.27
CLIP4-208ENST00000456385 ADGBQ8N7X0 1667 aa13.38□□□□□ -0.27
CLIP4-208ENST00000456385 SLKQ9H2G2 1235 aaPredicted RBP13.37□□□□□ -0.27
CLIP4-208ENST00000456385 INSRP06213 1382 aa13.36□□□□□ -0.27
CLIP4-208ENST00000456385 ARXQ96QS3 562 aa13.36□□□□□ -0.27
CLIP4-208ENST00000456385 TESK2Q96S53 571 aa13.36□□□□□ -0.27
CLIP4-208ENST00000456385 PDS5BQ9NTI5 1447 aa13.36□□□□□ -0.27
CLIP4-208ENST00000456385 PLEKHH2Q8IVE3 1493 aa13.35□□□□□ -0.27
CLIP4-208ENST00000456385 IGHDP01880 384 aa13.35□□□□□ -0.27
CLIP4-208ENST00000456385 GOLGA2Q08379 1002 aa13.35□□□□□ -0.27
CLIP4-208ENST00000456385 TROQ12816 1431 aaPredicted RBP13.35□□□□□ -0.27
CLIP4-208ENST00000456385 PRAG1Q86YV5 1406 aa13.34□□□□□ -0.27
CLIP4-208ENST00000456385 DISP1Q96F81 1524 aa13.34□□□□□ -0.27
CLIP4-208ENST00000456385 BCAR3O75815 825 aa13.34□□□□□ -0.27
CLIP4-208ENST00000456385 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.34□□□□□ -0.27
CLIP4-208ENST00000456385 ZNF521Q96K83 1311 aa13.33□□□□□ -0.27
CLIP4-208ENST00000456385 TARBP1Q13395 1621 aaKnown RBP13.33□□□□□ -0.27
CLIP4-208ENST00000456385 CEP170Q5SW79 1584 aa13.33□□□□□ -0.28
CLIP4-208ENST00000456385 SPINK5Q9NQ38 1064 aaPredicted RBP13.33□□□□□ -0.28
CLIP4-208ENST00000456385 COL17A1Q9UMD9 1497 aaPredicted RBP13.33□□□□□ -0.28
CLIP4-208ENST00000456385 KDM5DQ9BY66 1539 aa13.32□□□□□ -0.28
CLIP4-208ENST00000456385 WDR43Q15061 677 aaKnown RBP eCLIP13.32□□□□□ -0.28
CLIP4-208ENST00000456385 CROCC2H7BZ55 1655 aa13.32□□□□□ -0.28
CLIP4-208ENST00000456385 SLFN5Q08AF3 891 aa13.31□□□□□ -0.28
CLIP4-208ENST00000456385 RAPGEF6Q8TEU7 1601 aa13.31□□□□□ -0.28
CLIP4-208ENST00000456385 TRPM1Q7Z4N2 1603 aa13.31□□□□□ -0.28
CLIP4-208ENST00000456385 PPP2R1AP30153 589 aa13.3□□□□□ -0.28
CLIP4-208ENST00000456385 CCDC146Q8IYE0 955 aa13.3□□□□□ -0.28
CLIP4-208ENST00000456385 C9orf84Q5VXU9 1444 aa13.3□□□□□ -0.28
CLIP4-208ENST00000456385 ADAMTS12P58397 1594 aa13.3□□□□□ -0.28
CLIP4-208ENST00000456385 KIAA0556O60303 1618 aa13.3□□□□□ -0.28
CLIP4-208ENST00000456385 PBRM1Q86U86 1689 aa13.3□□□□□ -0.28
CLIP4-208ENST00000456385 ERBINQ96RT1 1412 aa13.29□□□□□ -0.28
CLIP4-208ENST00000456385 ANTXR1Q9H6X2 564 aa13.29□□□□□ -0.28
CLIP4-208ENST00000456385 ITSN2Q9NZM3 1697 aa13.29□□□□□ -0.28
CLIP4-208ENST00000456385 TMF1P82094 1093 aa13.28□□□□□ -0.28
CLIP4-208ENST00000456385 BECN1Q14457 450 aa13.28□□□□□ -0.28
CLIP4-208ENST00000456385 PLB1Q6P1J6 1458 aa13.28□□□□□ -0.28
CLIP4-208ENST00000456385 EIF3AQ14152 1382 aaKnown RBP13.28□□□□□ -0.28
CLIP4-208ENST00000456385 TSPY4P0CV99 314 aa13.28□□□□□ -0.28
CLIP4-208ENST00000456385 TSPY10P0CW01 314 aa13.28□□□□□ -0.28
CLIP4-208ENST00000456385 XRCC6P12956 609 aaKnown RBP eCLIP13.28□□□□□ -0.28
CLIP4-208ENST00000456385 L1TD1Q5T7N2 865 aaKnown RBP13.28□□□□□ -0.28
CLIP4-208ENST00000456385 GPRASP1Q5JY77 1395 aa13.27□□□□□ -0.28
CLIP4-208ENST00000456385 HNRNPMP52272 730 aaKnown RBP eCLIP13.27□□□□□ -0.28
CLIP4-208ENST00000456385 CCDC144AA2RUR9 1427 aa13.27□□□□□ -0.29
CLIP4-208ENST00000456385 PTPRGP23470 1445 aa13.27□□□□□ -0.29
CLIP4-208ENST00000456385 TRMT2AQ8IZ69 625 aaKnown RBP13.27□□□□□ -0.29
CLIP4-208ENST00000456385 PANK2Q9BZ23 570 aa13.27□□□□□ -0.29
CLIP4-208ENST00000456385 SPRYD3Q8NCJ5 442 aa13.26□□□□□ -0.29
CLIP4-208ENST00000456385 GZF1Q9H116 711 aaPredicted RBP13.26□□□□□ -0.29
CLIP4-208ENST00000456385 KNSTRNQ9Y448 316 aa13.26□□□□□ -0.29
CLIP4-208ENST00000456385 DMRT2Q9Y5R5 561 aa13.26□□□□□ -0.29
CLIP4-208ENST00000456385 MAGI2Q86UL8 1455 aa13.26□□□□□ -0.29
CLIP4-208ENST00000456385 APAF1O14727 1248 aa13.25□□□□□ -0.29
CLIP4-208ENST00000456385 NLRP1Q9C000 1473 aa13.25□□□□□ -0.29
CLIP4-208ENST00000456385 PKNOX2Q96KN3 472 aa13.25□□□□□ -0.29
CLIP4-208ENST00000456385 NAP1L5Q96NT1 182 aaPredicted RBP13.25□□□□□ -0.29
CLIP4-208ENST00000456385 A2MP01023 1474 aa13.24□□□□□ -0.29
CLIP4-208ENST00000456385 AMER1Q5JTC6 1135 aaPredicted RBP13.24□□□□□ -0.29
CLIP4-208ENST00000456385 PANK1Q8TE04 598 aa13.24□□□□□ -0.29
CLIP4-208ENST00000456385 DNAJC5BQ9UF47 199 aa13.24□□□□□ -0.29
CLIP4-208ENST00000456385 COG6Q9Y2V7 657 aa13.24□□□□□ -0.29
CLIP4-208ENST00000456385 TBC1D2Q9BYX2 928 aa13.24□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms