RNA–Protein interactions for RNA: ENST00000452322.2

LINC00339-205, long intergenic non-protein coding RNA 339, humanhuman

TSL 3

Gene LINC00339, Length 1,391 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-205ENST00000452322 ADAMTSL3P82987 1691 aa17.87■□□□□ 0.45
LINC00339-205ENST00000452322 MLECQ14165 292 aa17.87■□□□□ 0.45
LINC00339-205ENST00000452322 PRDM15P57071 1507 aaPredicted RBP17.86■□□□□ 0.45
LINC00339-205ENST00000452322 MROH1Q8NDA8 1641 aa17.86■□□□□ 0.45
LINC00339-205ENST00000452322 GGT6Q6P531 493 aa17.86■□□□□ 0.45
LINC00339-205ENST00000452322 FAM135AQ9P2D6 1515 aa17.85■□□□□ 0.45
LINC00339-205ENST00000452322 PPP6R1Q9UPN7 881 aa17.85■□□□□ 0.45
LINC00339-205ENST00000452322 UNC13BO14795 1591 aa17.84■□□□□ 0.45
LINC00339-205ENST00000452322 MADDQ8WXG6 1647 aa17.84■□□□□ 0.45
LINC00339-205ENST00000452322 FER1L4A9Z1Z3 1794 aa17.84■□□□□ 0.45
LINC00339-205ENST00000452322 SETD5Q9C0A6 1442 aa17.83■□□□□ 0.44
LINC00339-205ENST00000452322 KDM5DQ9BY66 1539 aa17.82■□□□□ 0.44
LINC00339-205ENST00000452322 ZC3H13Q5T200 1668 aaKnown RBP17.81■□□□□ 0.44
LINC00339-205ENST00000452322 CNTLNQ9NXG0 1405 aa17.8■□□□□ 0.44
LINC00339-205ENST00000452322 VWDEQ8N2E2 1590 aa17.8■□□□□ 0.44
LINC00339-205ENST00000452322 KDM4FA0A1W2PPD8 638 aa17.79■□□□□ 0.44
LINC00339-205ENST00000452322 KANK1Q14678 1352 aa17.79■□□□□ 0.44
LINC00339-205ENST00000452322 ESF1Q9H501 851 aaKnown RBP17.79■□□□□ 0.44
LINC00339-205ENST00000452322 ABCC3O15438 1527 aa17.78■□□□□ 0.44
LINC00339-205ENST00000452322 MROH2AA6NES4 1674 aa17.78■□□□□ 0.44
LINC00339-205ENST00000452322 CLTCQ00610 1675 aaKnown RBP17.78■□□□□ 0.44
LINC00339-205ENST00000452322 RIMS1Q86UR5 1692 aaKnown RBP17.78■□□□□ 0.44
LINC00339-205ENST00000452322 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.78■□□□□ 0.442e-8■■■□□ 14.6
LINC00339-205ENST00000452322 WASHC2CQ9Y4E1 1318 aa17.77■□□□□ 0.44
LINC00339-205ENST00000452322 RAB3GAP2Q9H2M9 1393 aa17.77■□□□□ 0.44
LINC00339-205ENST00000452322 LMTK2Q8IWU2 1503 aa17.77■□□□□ 0.44
LINC00339-205ENST00000452322 ACIN1Q9UKV3 1341 aaKnown RBP17.77■□□□□ 0.43
LINC00339-205ENST00000452322 IQGAP3Q86VI3 1631 aa17.76■□□□□ 0.43
LINC00339-205ENST00000452322 CEP152O94986 1710 aa17.76■□□□□ 0.43
LINC00339-205ENST00000452322 NUP155O75694 1391 aa17.75■□□□□ 0.43
LINC00339-205ENST00000452322 HRCP23327 699 aa17.74■□□□□ 0.43
LINC00339-205ENST00000452322 CAMSAP1Q5T5Y3 1602 aa17.73■□□□□ 0.43
LINC00339-205ENST00000452322 PTPRMP28827 1452 aa17.73■□□□□ 0.43
LINC00339-205ENST00000452322 ZMYM3Q14202 1370 aa17.72■□□□□ 0.43
LINC00339-205ENST00000452322 TET3O43151 1660 aa17.72■□□□□ 0.43
LINC00339-205ENST00000452322 C3P01024 1663 aa17.72■□□□□ 0.43
LINC00339-205ENST00000452322 EFCAB6Q5THR3 1501 aa17.71■□□□□ 0.43
LINC00339-205ENST00000452322 ARHGAP31Q2M1Z3 1444 aa17.71■□□□□ 0.42
LINC00339-205ENST00000452322 TRIM52Q96A61 297 aa17.7■□□□□ 0.42
LINC00339-205ENST00000452322 PZPP20742 1482 aa17.7■□□□□ 0.42
LINC00339-205ENST00000452322 PCGF6Q9BYE7 350 aa17.69■□□□□ 0.42
LINC00339-205ENST00000452322 RPRD2Q5VT52 1461 aaKnown RBP17.67■□□□□ 0.42
LINC00339-205ENST00000452322 NPATQ14207 1427 aa17.66■□□□□ 0.42
LINC00339-205ENST00000452322 CEBPAP49715 358 aaPredicted RBP17.65■□□□□ 0.42
LINC00339-205ENST00000452322 E9PCH4 1651 aa17.65■□□□□ 0.42
LINC00339-205ENST00000452322 SLC4A1APQ9BWU0 796 aaKnown RBP17.64■□□□□ 0.41
LINC00339-205ENST00000452322 ERVK-7P63135 1459 aa17.63■□□□□ 0.41
LINC00339-205ENST00000452322 SPATA31D1Q6ZQQ2 1576 aa17.63■□□□□ 0.41
LINC00339-205ENST00000452322 PREX1Q8TCU6 1659 aa17.62■□□□□ 0.41
LINC00339-205ENST00000452322 PLPPR3Q6T4P5 718 aa17.61■□□□□ 0.41
LINC00339-205ENST00000452322 MPHOSPH9Q99550 1183 aa17.61■□□□□ 0.41
LINC00339-205ENST00000452322 FBXO31Q5XUX0 539 aaPredicted RBP17.6■□□□□ 0.41
LINC00339-205ENST00000452322 NOS1P29475 1434 aa17.6■□□□□ 0.41
LINC00339-205ENST00000452322 PKD2Q13563 968 aa17.59■□□□□ 0.41
LINC00339-205ENST00000452322 CFAP65Q6ZU64 1925 aaKnown RBP17.58■□□□□ 0.4
LINC00339-205ENST00000452322 TNRQ92752 1358 aa17.58■□□□□ 0.4
LINC00339-205ENST00000452322 SETD1BQ9UPS6 1966 aaKnown RBP17.57■□□□□ 0.4
LINC00339-205ENST00000452322 SPHKAPQ2M3C7 1700 aa17.56■□□□□ 0.4
LINC00339-205ENST00000452322 SYNMO15061 1565 aa17.56■□□□□ 0.4
LINC00339-205ENST00000452322 PTPRTO14522 1441 aa17.56■□□□□ 0.4
LINC00339-205ENST00000452322 MYO3AQ8NEV4 1616 aa17.55■□□□□ 0.4
LINC00339-205ENST00000452322 TRPM2O94759 1503 aa17.54■□□□□ 0.4
LINC00339-205ENST00000452322 NLRP1Q9C000 1473 aa17.53■□□□□ 0.4
LINC00339-205ENST00000452322 UHRF1BP1Q6BDS2 1440 aa17.52■□□□□ 0.4
LINC00339-205ENST00000452322 PLA2R1Q13018 1463 aa17.51■□□□□ 0.39
LINC00339-205ENST00000452322 PIK3C2BO00750 1634 aa17.51■□□□□ 0.39
LINC00339-205ENST00000452322 ZNF142P52746 1687 aaPredicted RBP17.51■□□□□ 0.39
LINC00339-205ENST00000452322 FOXD1Q16676 465 aa17.51■□□□□ 0.39
LINC00339-205ENST00000452322 SLC52A1Q9NWF4 448 aa17.51■□□□□ 0.39
LINC00339-205ENST00000452322 DHX57Q6P158 1386 aaKnown RBP17.5■□□□□ 0.39
LINC00339-205ENST00000452322 CEP170BQ9Y4F5 1589 aaPredicted RBP17.5■□□□□ 0.39
LINC00339-205ENST00000452322 A2ML1A8K2U0 1454 aa17.49■□□□□ 0.39
LINC00339-205ENST00000452322 UGGT1Q9NYU2 1555 aa17.48■□□□□ 0.39
LINC00339-205ENST00000452322 LMTK3Q96Q04 1460 aa17.47■□□□□ 0.39
LINC00339-205ENST00000452322 IDI1Q13907 227 aa17.47■□□□□ 0.39
LINC00339-205ENST00000452322 ANKRD30BQ9BXX2 1392 aa17.46■□□□□ 0.39
LINC00339-205ENST00000452322 KDM5AP29375 1690 aaKnown RBP17.46■□□□□ 0.39
LINC00339-205ENST00000452322 CLTCL1P53675 1640 aa17.46■□□□□ 0.39
LINC00339-205ENST00000452322 CCDC144AA2RUR9 1427 aa17.45■□□□□ 0.38
LINC00339-205ENST00000452322 ADGRB3O60242 1522 aa17.44■□□□□ 0.38
LINC00339-205ENST00000452322 UBR1Q8IWV7 1749 aa17.44■□□□□ 0.38
LINC00339-205ENST00000452322 TMEM131LA2VDJ0 1609 aa17.42■□□□□ 0.38
LINC00339-205ENST00000452322 KIF1BO60333 1816 aa17.41■□□□□ 0.38
LINC00339-205ENST00000452322 STAG3Q9UJ98 1225 aa17.4■□□□□ 0.38
LINC00339-205ENST00000452322 THEMISQ8N1K5 641 aaPredicted RBP17.39■□□□□ 0.37
LINC00339-205ENST00000452322 NEURL4Q96JN8 1562 aa17.38■□□□□ 0.37
LINC00339-205ENST00000452322 MYO5BQ9ULV0 1848 aa17.37■□□□□ 0.37
LINC00339-205ENST00000452322 CHGAP10645 457 aaKnown RBP17.37■□□□□ 0.37
LINC00339-205ENST00000452322 SLIT1O75093 1534 aa17.37■□□□□ 0.37
LINC00339-205ENST00000452322 SPATA31E1Q6ZUB1 1445 aa17.36■□□□□ 0.37
LINC00339-205ENST00000452322 ARHGAP23Q9P227 1491 aa17.35■□□□□ 0.37
LINC00339-205ENST00000452322 TMEM2Q9UHN6 1383 aa17.35■□□□□ 0.37
LINC00339-205ENST00000452322 HSPA2P54652 639 aa17.35■□□□□ 0.37
LINC00339-205ENST00000452322 CLSPNQ9HAW4 1339 aa17.33■□□□□ 0.36
LINC00339-205ENST00000452322 ZFYVE9O95405 1425 aa17.32■□□□□ 0.36
LINC00339-205ENST00000452322 RIMS2Q9UQ26 1411 aa17.31■□□□□ 0.36
LINC00339-205ENST00000452322 ZNF326Q5BKZ1 582 aaKnown RBP17.3■□□□□ 0.36
LINC00339-205ENST00000452322 POLR1AO95602 1720 aaPredicted RBP17.3■□□□□ 0.36
LINC00339-205ENST00000452322 NEXMIFQ5QGS0 1516 aa17.3■□□□□ 0.36
LINC00339-205ENST00000452322 CCER1Q8TC90 406 aaPredicted RBP17.29■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms