RNA–Protein interactions for RNA: ENST00000448971.5

USP39-206, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 610 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-206ENST00000448971 ZNF142P52746 1687 aaPredicted RBP22.74■■□□□ 1.23
USP39-206ENST00000448971 TCOF1Q13428 1488 aaKnown RBP22.74■■□□□ 1.23
USP39-206ENST00000448971 MYO3AQ8NEV4 1616 aa22.74■■□□□ 1.23
USP39-206ENST00000448971 CEP170BQ9Y4F5 1589 aaPredicted RBP22.73■■□□□ 1.23
USP39-206ENST00000448971 ADGBQ8N7X0 1667 aa22.73■■□□□ 1.23
USP39-206ENST00000448971 RTEL1-TNFRSF6BF6WH68 1400 aa22.73■■□□□ 1.23
USP39-206ENST00000448971 MYOM3Q5VTT5 1437 aa22.73■■□□□ 1.23
USP39-206ENST00000448971 DHX29Q7Z478 1369 aaKnown RBP22.72■■□□□ 1.23
USP39-206ENST00000448971 CCDC141Q6ZP82 1450 aa22.67■■□□□ 1.22
USP39-206ENST00000448971 UBAP1LF5GYI3 381 aa22.67■■□□□ 1.22
USP39-206ENST00000448971 SPATA31D1Q6ZQQ2 1576 aa22.67■■□□□ 1.22
USP39-206ENST00000448971 A2ML1A8K2U0 1454 aa22.66■■□□□ 1.22
USP39-206ENST00000448971 MIA2Q96PC5 1412 aa22.66■■□□□ 1.22
USP39-206ENST00000448971 FBXO31Q5XUX0 539 aaPredicted RBP22.66■■□□□ 1.22
USP39-206ENST00000448971 DNMT1P26358 1616 aaKnown RBP22.64■■□□□ 1.22
USP39-206ENST00000448971 KIF3BO15066 747 aa22.64■■□□□ 1.21
USP39-206ENST00000448971 ARHGEF5Q12774 1597 aa22.63■■□□□ 1.21
USP39-206ENST00000448971 RSPH4AQ5TD94 716 aa22.63■■□□□ 1.21
USP39-206ENST00000448971 PTPN23Q9H3S7 1636 aa22.6■■□□□ 1.21
USP39-206ENST00000448971 FGD6Q6ZV73 1430 aa22.59■■□□□ 1.21
USP39-206ENST00000448971 TNRQ92752 1358 aa22.59■■□□□ 1.21
USP39-206ENST00000448971 WASHC2CQ9Y4E1 1318 aa22.57■■□□□ 1.2
USP39-206ENST00000448971 PZPP20742 1482 aa22.57■■□□□ 1.2
USP39-206ENST00000448971 NEURL4Q96JN8 1562 aa22.55■■□□□ 1.2
USP39-206ENST00000448971 KDM5DQ9BY66 1539 aa22.54■■□□□ 1.2
USP39-206ENST00000448971 FAM135AQ9P2D6 1515 aa22.54■■□□□ 1.2
USP39-206ENST00000448971 ANKLE2Q86XL3 938 aa22.53■■□□□ 1.2
USP39-206ENST00000448971 THEMISQ8N1K5 641 aaPredicted RBP22.52■■□□□ 1.2
USP39-206ENST00000448971 CROCC2H7BZ55 1655 aa22.52■■□□□ 1.2
USP39-206ENST00000448971 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP22.51■■□□□ 1.191e-6■□□□□ 11
USP39-206ENST00000448971 MAST1Q9Y2H9 1570 aa22.51■■□□□ 1.19
USP39-206ENST00000448971 TSPY4P0CV99 314 aa22.51■■□□□ 1.19
USP39-206ENST00000448971 TSPY10P0CW01 314 aa22.51■■□□□ 1.19
USP39-206ENST00000448971 SHANK2Q9UPX8 1470 aa22.51■■□□□ 1.19
USP39-206ENST00000448971 POLR1AO95602 1720 aaPredicted RBP22.51■■□□□ 1.19
USP39-206ENST00000448971 CPS1P31327 1500 aa22.48■■□□□ 1.19
USP39-206ENST00000448971 TOM1O60784 492 aa22.48■■□□□ 1.19
USP39-206ENST00000448971 HSPA1LP34931 641 aa22.48■■□□□ 1.19
USP39-206ENST00000448971 NLRP1Q9C000 1473 aa22.47■■□□□ 1.19
USP39-206ENST00000448971 PPARGC1BQ86YN6 1023 aaKnown RBP22.47■■□□□ 1.19
USP39-206ENST00000448971 MED14O60244 1454 aa22.47■■□□□ 1.19
USP39-206ENST00000448971 DAPK1P53355 1430 aa22.46■■□□□ 1.19
USP39-206ENST00000448971 PIP4K2BP78356 416 aa22.45■■□□□ 1.18
USP39-206ENST00000448971 VWDEQ8N2E2 1590 aa22.45■■□□□ 1.18
USP39-206ENST00000448971 UGGT1Q9NYU2 1555 aa22.45■■□□□ 1.18
USP39-206ENST00000448971 ABCC5O15440 1437 aa22.43■■□□□ 1.18
USP39-206ENST00000448971 NPHP4O75161 1426 aaPredicted RBP22.43■■□□□ 1.18
USP39-206ENST00000448971 FAM50AQ14320 339 aaKnown RBP22.43■■□□□ 1.18
USP39-206ENST00000448971 SCAF1Q9H7N4 1312 aaKnown RBP22.42■■□□□ 1.18
USP39-206ENST00000448971 DEPDC5O75140 1603 aa22.42■■□□□ 1.18
USP39-206ENST00000448971 RNF17Q9BXT8 1623 aaKnown RBP22.4■■□□□ 1.18
USP39-206ENST00000448971 ABCC3O15438 1527 aa22.39■■□□□ 1.17
USP39-206ENST00000448971 ALKQ9UM73 1620 aa22.38■■□□□ 1.17
USP39-206ENST00000448971 EIF2AK4Q9P2K8 1649 aaKnown RBP22.36■■□□□ 1.17
USP39-206ENST00000448971 KIF15Q9NS87 1388 aa22.36■■□□□ 1.17
USP39-206ENST00000448971 DUOX2Q9NRD8 1548 aa22.36■■□□□ 1.17
USP39-206ENST00000448971 CFAP65Q6ZU64 1925 aaKnown RBP22.35■■□□□ 1.17
USP39-206ENST00000448971 ERVK-7P63135 1459 aa22.34■■□□□ 1.17
USP39-206ENST00000448971 IQGAP1P46940 1657 aa22.34■■□□□ 1.17
USP39-206ENST00000448971 MROH1Q8NDA8 1641 aa22.34■■□□□ 1.17
USP39-206ENST00000448971 ZC3H13Q5T200 1668 aaKnown RBP22.33■■□□□ 1.17
USP39-206ENST00000448971 STRCP1A6NGW2 1772 aa22.33■■□□□ 1.17
USP39-206ENST00000448971 MED1Q15648 1581 aaPredicted RBP22.33■■□□□ 1.16
USP39-206ENST00000448971 CHIC2Q9UKJ5 165 aa22.32■■□□□ 1.16
USP39-206ENST00000448971 ANKRD30AQ9BXX3 1397 aa22.32■■□□□ 1.16
USP39-206ENST00000448971 LRRC7Q96NW7 1537 aa22.31■■□□□ 1.16
USP39-206ENST00000448971 ERBINQ96RT1 1412 aa22.31■■□□□ 1.16
USP39-206ENST00000448971 PIAS4Q8N2W9 510 aaPredicted RBP22.3■■□□□ 1.16
USP39-206ENST00000448971 ADGRL2O95490 1459 aa22.29■■□□□ 1.16
USP39-206ENST00000448971 RRP7BPQ9NSQ0 103 aa22.29■■□□□ 1.16
USP39-206ENST00000448971 LTKP29376 864 aa22.28■■□□□ 1.16
USP39-206ENST00000448971 UBR1Q8IWV7 1749 aa22.27■■□□□ 1.16
USP39-206ENST00000448971 CEP152O94986 1710 aa22.26■■□□□ 1.15
USP39-206ENST00000448971 ARHGAP31Q2M1Z3 1444 aa22.25■■□□□ 1.15
USP39-206ENST00000448971 RRBP1Q9P2E9 1410 aaKnown RBP22.24■■□□□ 1.15
USP39-206ENST00000448971 ARHGAP23Q9P227 1491 aa22.24■■□□□ 1.15
USP39-206ENST00000448971 TXNDC2Q86VQ3 553 aa22.24■■□□□ 1.15
USP39-206ENST00000448971 SCAF11Q99590 1463 aaKnown RBP22.23■■□□□ 1.15
USP39-206ENST00000448971 SLIT1O75093 1534 aa22.22■■□□□ 1.15
USP39-206ENST00000448971 PRDM15P57071 1507 aaPredicted RBP22.22■■□□□ 1.15
USP39-206ENST00000448971 ITGAEP38570 1179 aa22.22■■□□□ 1.15
USP39-206ENST00000448971 SYNMO15061 1565 aa22.2■■□□□ 1.14
USP39-206ENST00000448971 GRWD1Q9BQ67 446 aaKnown RBP eCLIP22.17■■□□□ 1.143e-6■□□□□ 9.9
USP39-206ENST00000448971 ANKRD50Q9ULJ7 1429 aa22.16■■□□□ 1.14
USP39-206ENST00000448971 ROCK1Q13464 1354 aa22.16■■□□□ 1.14
USP39-206ENST00000448971 EID1Q9Y6B2 187 aa22.16■■□□□ 1.14
USP39-206ENST00000448971 XIRP1Q702N8 1843 aaKnown RBP22.15■■□□□ 1.14
USP39-206ENST00000448971 TMEM2Q9UHN6 1383 aa22.14■■□□□ 1.14
USP39-206ENST00000448971 KANK1Q14678 1352 aa22.13■■□□□ 1.13
USP39-206ENST00000448971 IDI1Q13907 227 aa22.13■■□□□ 1.13
USP39-206ENST00000448971 PIK3C2BO00750 1634 aa22.13■■□□□ 1.13
USP39-206ENST00000448971 RGS17Q9UGC6 210 aaPredicted RBP22.11■■□□□ 1.13
USP39-206ENST00000448971 STAG3Q9UJ98 1225 aa22.09■■□□□ 1.13
USP39-206ENST00000448971 LMTK2Q8IWU2 1503 aa22.08■■□□□ 1.13
USP39-206ENST00000448971 FAM135BQ49AJ0 1406 aa22.07■■□□□ 1.12
USP39-206ENST00000448971 KCNA6P17658 529 aa22.07■■□□□ 1.12
USP39-206ENST00000448971 UNC13BO14795 1591 aa22.07■■□□□ 1.12
USP39-206ENST00000448971 TET3O43151 1660 aa22.06■■□□□ 1.12
USP39-206ENST00000448971 KDM5AP29375 1690 aaKnown RBP22.06■■□□□ 1.12
USP39-206ENST00000448971 EFCAB6Q5THR3 1501 aa22.06■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms