RNA–Protein interactions for RNA: ENST00000447360.6

LRRC28-203, Transcript of leucine rich repeat containing 28, humanhuman

TSL 1 (best) BASIC

Gene LRRC28, Length 1,235 nt, Biotype protein coding, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-203ENST00000447360 SUPT6HQ7KZ85 1726 aaKnown RBP11.65□□□□□ -0.54
LRRC28-203ENST00000447360 CDC42BPAQ5VT25 1732 aa11.64□□□□□ -0.55
LRRC28-203ENST00000447360 LRRIQ1Q96JM4 1722 aa11.64□□□□□ -0.55
LRRC28-203ENST00000447360 TNRQ92752 1358 aa11.64□□□□□ -0.55
LRRC28-203ENST00000447360 NEURL4Q96JN8 1562 aa11.62□□□□□ -0.55
LRRC28-203ENST00000447360 INO80Q9ULG1 1556 aaPredicted RBP11.62□□□□□ -0.55
LRRC28-203ENST00000447360 FBXO31Q5XUX0 539 aaPredicted RBP11.62□□□□□ -0.55
LRRC28-203ENST00000447360 DHX29Q7Z478 1369 aaKnown RBP11.61□□□□□ -0.55
LRRC28-203ENST00000447360 CCNB3Q8WWL7 1395 aa11.61□□□□□ -0.55
LRRC28-203ENST00000447360 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP11.61□□□□□ -0.55
LRRC28-203ENST00000447360 MED14O60244 1454 aa11.61□□□□□ -0.55
LRRC28-203ENST00000447360 RTEL1-TNFRSF6BF6WH68 1400 aa11.6□□□□□ -0.55
LRRC28-203ENST00000447360 VWDEQ8N2E2 1590 aa11.6□□□□□ -0.55
LRRC28-203ENST00000447360 FYCO1Q9BQS8 1478 aa11.6□□□□□ -0.55
LRRC28-203ENST00000447360 ALKQ9UM73 1620 aa11.6□□□□□ -0.55
LRRC28-203ENST00000447360 NPHP4O75161 1426 aaPredicted RBP11.6□□□□□ -0.55
LRRC28-203ENST00000447360 PZPP20742 1482 aa11.59□□□□□ -0.55
LRRC28-203ENST00000447360 RGS17Q9UGC6 210 aaPredicted RBP11.59□□□□□ -0.55
LRRC28-203ENST00000447360 MIA2Q96PC5 1412 aa11.59□□□□□ -0.55
LRRC28-203ENST00000447360 WASHC2CQ9Y4E1 1318 aa11.59□□□□□ -0.55
LRRC28-203ENST00000447360 NLRP1Q9C000 1473 aa11.58□□□□□ -0.56
LRRC28-203ENST00000447360 KIF3BO15066 747 aa11.58□□□□□ -0.56
LRRC28-203ENST00000447360 POLR1AO95602 1720 aaPredicted RBP11.57□□□□□ -0.56
LRRC28-203ENST00000447360 FAM135AQ9P2D6 1515 aa11.57□□□□□ -0.56
LRRC28-203ENST00000447360 MBD5Q9P267 1494 aa11.57□□□□□ -0.56
LRRC28-203ENST00000447360 LRRC7Q96NW7 1537 aa11.56□□□□□ -0.56
LRRC28-203ENST00000447360 ADGBQ8N7X0 1667 aa11.56□□□□□ -0.56
LRRC28-203ENST00000447360 UGGT1Q9NYU2 1555 aa11.56□□□□□ -0.56
LRRC28-203ENST00000447360 DEPDC5O75140 1603 aa11.56□□□□□ -0.56
LRRC28-203ENST00000447360 ZNF644Q9H582 1327 aaPredicted RBP11.56□□□□□ -0.56
LRRC28-203ENST00000447360 KDM5DQ9BY66 1539 aa11.55□□□□□ -0.56
LRRC28-203ENST00000447360 RSPH4AQ5TD94 716 aa11.54□□□□□ -0.56
LRRC28-203ENST00000447360 MTUS2Q5JR59 1369 aa11.54□□□□□ -0.56
LRRC28-203ENST00000447360 RNF17Q9BXT8 1623 aaKnown RBP11.51□□□□□ -0.57
LRRC28-203ENST00000447360 SYNMO15061 1565 aa11.5□□□□□ -0.57
LRRC28-203ENST00000447360 POTEAQ6S8J7 498 aa11.5□□□□□ -0.57
LRRC28-203ENST00000447360 FAM135BQ49AJ0 1406 aa11.5□□□□□ -0.57
LRRC28-203ENST00000447360 IQGAP1P46940 1657 aa11.49□□□□□ -0.57
LRRC28-203ENST00000447360 CCDC141Q6ZP82 1450 aa11.48□□□□□ -0.57
LRRC28-203ENST00000447360 TIAM1Q13009 1591 aa11.47□□□□□ -0.57
LRRC28-203ENST00000447360 CEP162Q5TB80 1403 aa11.47□□□□□ -0.57
LRRC28-203ENST00000447360 TSPY4P0CV99 314 aa11.46□□□□□ -0.57
LRRC28-203ENST00000447360 TSPY10P0CW01 314 aa11.46□□□□□ -0.57
LRRC28-203ENST00000447360 STRCP1A6NGW2 1772 aa11.46□□□□□ -0.58
LRRC28-203ENST00000447360 SCAF11Q99590 1463 aaKnown RBP11.45□□□□□ -0.58
LRRC28-203ENST00000447360 LTKP29376 864 aa11.45□□□□□ -0.58
LRRC28-203ENST00000447360 TXNDC2Q86VQ3 553 aa11.45□□□□□ -0.58
LRRC28-203ENST00000447360 SRCAPQ6ZRS2 3230 aa11.44□□□□□ -0.58
LRRC28-203ENST00000447360 EID1Q9Y6B2 187 aa11.44□□□□□ -0.58
LRRC28-203ENST00000447360 ERVK-7P63135 1459 aa11.44□□□□□ -0.58
LRRC28-203ENST00000447360 ABCC3O15438 1527 aa11.43□□□□□ -0.58
LRRC28-203ENST00000447360 EHBP1L1Q8N3D4 1523 aa11.43□□□□□ -0.58
LRRC28-203ENST00000447360 ARHGAP23Q9P227 1491 aa11.43□□□□□ -0.58
LRRC28-203ENST00000447360 CAMSAP2Q08AD1 1489 aa11.42□□□□□ -0.58
LRRC28-203ENST00000447360 ZC3H13Q5T200 1668 aaKnown RBP11.42□□□□□ -0.58
LRRC28-203ENST00000447360 SLIT1O75093 1534 aa11.41□□□□□ -0.58
LRRC28-203ENST00000447360 NCOA2Q15596 1464 aa11.41□□□□□ -0.58
LRRC28-203ENST00000447360 TMEM94Q12767 1356 aa11.41□□□□□ -0.58
LRRC28-203ENST00000447360 KCNA6P17658 529 aa11.4□□□□□ -0.58
LRRC28-203ENST00000447360 ARHGEF5Q12774 1597 aa11.38□□□□□ -0.59
LRRC28-203ENST00000447360 TMEM2Q9UHN6 1383 aa11.38□□□□□ -0.59
LRRC28-203ENST00000447360 UBR1Q8IWV7 1749 aa11.38□□□□□ -0.59
LRRC28-203ENST00000447360 ARHGAP31Q2M1Z3 1444 aa11.37□□□□□ -0.59
LRRC28-203ENST00000447360 PROSER2Q86WR7 435 aaPredicted RBP11.37□□□□□ -0.59
LRRC28-203ENST00000447360 JCADQ9P266 1359 aa11.37□□□□□ -0.59
LRRC28-203ENST00000447360 LRRC9Q6ZRR7 1453 aa11.37□□□□□ -0.59
LRRC28-203ENST00000447360 UPF1Q92900 1129 aaKnown RBP eCLIP11.36□□□□□ -0.59
LRRC28-203ENST00000447360 SLAIN2Q9P270 581 aa11.36□□□□□ -0.59
LRRC28-203ENST00000447360 STAG3Q9UJ98 1225 aa11.35□□□□□ -0.59
LRRC28-203ENST00000447360 XIRP1Q702N8 1843 aaKnown RBP11.35□□□□□ -0.59
LRRC28-203ENST00000447360 ROBO1Q9Y6N7 1651 aa11.34□□□□□ -0.59
LRRC28-203ENST00000447360 ZNF772Q68DY9 489 aaPredicted RBP11.34□□□□□ -0.59
LRRC28-203ENST00000447360 EIF2AK4Q9P2K8 1649 aaKnown RBP11.34□□□□□ -0.59
LRRC28-203ENST00000447360 MAP3K1Q13233 1512 aa11.34□□□□□ -0.59
LRRC28-203ENST00000447360 MAST1Q9Y2H9 1570 aa11.33□□□□□ -0.6
LRRC28-203ENST00000447360 MSH6P52701 1360 aa11.33□□□□□ -0.6
LRRC28-203ENST00000447360 RBM33Q96EV2 1170 aaKnown RBP11.33□□□□□ -0.6
LRRC28-203ENST00000447360 SLC26A8Q96RN1 970 aa11.33□□□□□ -0.6
LRRC28-203ENST00000447360 MROH1Q8NDA8 1641 aa11.33□□□□□ -0.6
LRRC28-203ENST00000447360 PRDM15P57071 1507 aaPredicted RBP11.33□□□□□ -0.6
LRRC28-203ENST00000447360 SPATA31A6Q5VVP1 1343 aa11.33□□□□□ -0.6
LRRC28-203ENST00000447360 SLC4A1APQ9BWU0 796 aaKnown RBP11.32□□□□□ -0.6
LRRC28-203ENST00000447360 NKTRP30414 1462 aaKnown RBP11.32□□□□□ -0.6
LRRC28-203ENST00000447360 IDI1Q13907 227 aa11.31□□□□□ -0.6
LRRC28-203ENST00000447360 TET3O43151 1660 aa11.3□□□□□ -0.6
LRRC28-203ENST00000447360 DUOX2Q9NRD8 1548 aa11.3□□□□□ -0.6
LRRC28-203ENST00000447360 FGD6Q6ZV73 1430 aa11.3□□□□□ -0.6
LRRC28-203ENST00000447360 RXRBP28702 533 aa11.29□□□□□ -0.6
LRRC28-203ENST00000447360 MEX3CQ5U5Q3 659 aaKnown RBP11.29□□□□□ -0.6
LRRC28-203ENST00000447360 TRIM52Q96A61 297 aa11.29□□□□□ -0.6
LRRC28-203ENST00000447360 EFCAB6Q5THR3 1501 aa11.29□□□□□ -0.6
LRRC28-203ENST00000447360 SETD1AO15047 1707 aaKnown RBP11.29□□□□□ -0.6
LRRC28-203ENST00000447360 KANK1Q14678 1352 aa11.28□□□□□ -0.6
LRRC28-203ENST00000447360 KIF15Q9NS87 1388 aa11.28□□□□□ -0.6
LRRC28-203ENST00000447360 MYOM3Q5VTT5 1437 aa11.27□□□□□ -0.6
LRRC28-203ENST00000447360 ERBINQ96RT1 1412 aa11.27□□□□□ -0.6
LRRC28-203ENST00000447360 NCOA3Q9Y6Q9 1424 aa11.27□□□□□ -0.6
LRRC28-203ENST00000447360 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.27□□□□□ -0.61
LRRC28-203ENST00000447360 SLC52A1Q9NWF4 448 aa11.27□□□□□ -0.61
LRRC28-203ENST00000447360 NWD1Q149M9 1564 aa11.27□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms