RNA–Protein interactions for RNA: ENST00000438518.5

HDAC6-208, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 610 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-208ENST00000438518 KIF3BO15066 747 aa27.51■■□□□ 1.99
HDAC6-208ENST00000438518 ARID4BQ4LE39 1312 aaPredicted RBP27.5■■□□□ 1.99
HDAC6-208ENST00000438518 HRCP23327 699 aa27.5■■□□□ 1.99
HDAC6-208ENST00000438518 PPP6R1Q9UPN7 881 aa27.5■■□□□ 1.99
HDAC6-208ENST00000438518 ZC3H13Q5T200 1668 aaKnown RBP27.49■■□□□ 1.99
HDAC6-208ENST00000438518 MROH1Q8NDA8 1641 aa27.49■■□□□ 1.99
HDAC6-208ENST00000438518 RAB3GAP2Q9H2M9 1393 aa27.46■■□□□ 1.99
HDAC6-208ENST00000438518 KDM5DQ9BY66 1539 aa27.46■■□□□ 1.99
HDAC6-208ENST00000438518 PCGF6Q9BYE7 350 aa27.44■■□□□ 1.98
HDAC6-208ENST00000438518 KANK1Q14678 1352 aa27.44■■□□□ 1.98
HDAC6-208ENST00000438518 VWDEQ8N2E2 1590 aa27.43■■□□□ 1.98
HDAC6-208ENST00000438518 IQGAP3Q86VI3 1631 aa27.43■■□□□ 1.98
HDAC6-208ENST00000438518 ADAMTSL3P82987 1691 aa27.42■■□□□ 1.98
HDAC6-208ENST00000438518 FER1L4A9Z1Z3 1794 aa27.42■■□□□ 1.98
HDAC6-208ENST00000438518 GGT6Q6P531 493 aa27.4■■□□□ 1.98
HDAC6-208ENST00000438518 LMTK2Q8IWU2 1503 aa27.39■■□□□ 1.98
HDAC6-208ENST00000438518 CNTLNQ9NXG0 1405 aa27.39■■□□□ 1.97
HDAC6-208ENST00000438518 MROH2AA6NES4 1674 aa27.39■■□□□ 1.97
HDAC6-208ENST00000438518 CEP152O94986 1710 aa27.36■■□□□ 1.97
HDAC6-208ENST00000438518 ABCC3O15438 1527 aa27.36■■□□□ 1.97
HDAC6-208ENST00000438518 CLTCQ00610 1675 aaKnown RBP27.35■■□□□ 1.97
HDAC6-208ENST00000438518 NUP155O75694 1391 aa27.35■■□□□ 1.97
HDAC6-208ENST00000438518 TET3O43151 1660 aa27.34■■□□□ 1.97
HDAC6-208ENST00000438518 MLECQ14165 292 aa27.34■■□□□ 1.97
HDAC6-208ENST00000438518 ESF1Q9H501 851 aaKnown RBP27.34■■□□□ 1.97
HDAC6-208ENST00000438518 MADDQ8WXG6 1647 aa27.34■■□□□ 1.97
HDAC6-208ENST00000438518 WASHC2CQ9Y4E1 1318 aa27.33■■□□□ 1.97
HDAC6-208ENST00000438518 CAMSAP1Q5T5Y3 1602 aa27.33■■□□□ 1.97
HDAC6-208ENST00000438518 GRWD1Q9BQ67 446 aaKnown RBP eCLIP27.32■■□□□ 1.966e-7■□□□□ 8.9
HDAC6-208ENST00000438518 TRIM52Q96A61 297 aa27.29■■□□□ 1.96
HDAC6-208ENST00000438518 EFCAB6Q5THR3 1501 aa27.29■■□□□ 1.96
HDAC6-208ENST00000438518 RIMS1Q86UR5 1692 aaKnown RBP27.27■■□□□ 1.96
HDAC6-208ENST00000438518 ARHGAP31Q2M1Z3 1444 aa27.27■■□□□ 1.96
HDAC6-208ENST00000438518 PZPP20742 1482 aa27.26■■□□□ 1.95
HDAC6-208ENST00000438518 RPRD2Q5VT52 1461 aaKnown RBP27.26■■□□□ 1.95
HDAC6-208ENST00000438518 C3P01024 1663 aa27.22■■□□□ 1.95
HDAC6-208ENST00000438518 E9PCH4 1651 aa27.21■■□□□ 1.95
HDAC6-208ENST00000438518 SLC4A1APQ9BWU0 796 aaKnown RBP27.2■■□□□ 1.94
HDAC6-208ENST00000438518 ZMYM3Q14202 1370 aa27.2■■□□□ 1.94
HDAC6-208ENST00000438518 MPHOSPH9Q99550 1183 aa27.17■■□□□ 1.94
HDAC6-208ENST00000438518 NPATQ14207 1427 aa27.16■■□□□ 1.94
HDAC6-208ENST00000438518 PREX1Q8TCU6 1659 aa27.15■■□□□ 1.94
HDAC6-208ENST00000438518 PTPRMP28827 1452 aa27.15■■□□□ 1.94
HDAC6-208ENST00000438518 SPATA31D1Q6ZQQ2 1576 aa27.13■■□□□ 1.93
HDAC6-208ENST00000438518 SPHKAPQ2M3C7 1700 aa27.13■■□□□ 1.93
HDAC6-208ENST00000438518 KDM4FA0A1W2PPD8 638 aa27.12■■□□□ 1.93
HDAC6-208ENST00000438518 PKD2Q13563 968 aa27.1■■□□□ 1.93
HDAC6-208ENST00000438518 ERVK-7P63135 1459 aa27.09■■□□□ 1.93
HDAC6-208ENST00000438518 NOS1P29475 1434 aa27.07■■□□□ 1.92
HDAC6-208ENST00000438518 DHX57Q6P158 1386 aaKnown RBP27.07■■□□□ 1.92
HDAC6-208ENST00000438518 PTPRTO14522 1441 aa27.06■■□□□ 1.92
HDAC6-208ENST00000438518 TRPM2O94759 1503 aa27.06■■□□□ 1.92
HDAC6-208ENST00000438518 CFAP65Q6ZU64 1925 aaKnown RBP27.04■■□□□ 1.92
HDAC6-208ENST00000438518 SETD1BQ9UPS6 1966 aaKnown RBP27.02■■□□□ 1.92
HDAC6-208ENST00000438518 SYNMO15061 1565 aa27.01■■□□□ 1.91
HDAC6-208ENST00000438518 PIK3C2BO00750 1634 aa27■■□□□ 1.91
HDAC6-208ENST00000438518 TNRQ92752 1358 aa26.98■■□□□ 1.91
HDAC6-208ENST00000438518 CEBPAP49715 358 aaPredicted RBP26.98■■□□□ 1.91
HDAC6-208ENST00000438518 NLRP1Q9C000 1473 aa26.98■■□□□ 1.91
HDAC6-208ENST00000438518 MYO3AQ8NEV4 1616 aa26.98■■□□□ 1.91
HDAC6-208ENST00000438518 KDM5AP29375 1690 aaKnown RBP26.96■■□□□ 1.91
HDAC6-208ENST00000438518 FBXO31Q5XUX0 539 aaPredicted RBP26.96■■□□□ 1.91
HDAC6-208ENST00000438518 SLC52A1Q9NWF4 448 aa26.96■■□□□ 1.91
HDAC6-208ENST00000438518 CLSPNQ9HAW4 1339 aa26.95■■□□□ 1.91
HDAC6-208ENST00000438518 PLA2R1Q13018 1463 aa26.95■■□□□ 1.91
HDAC6-208ENST00000438518 ANKRD30BQ9BXX2 1392 aa26.95■■□□□ 1.9
HDAC6-208ENST00000438518 ZNF142P52746 1687 aaPredicted RBP26.94■■□□□ 1.9
HDAC6-208ENST00000438518 CCDC144AA2RUR9 1427 aa26.93■■□□□ 1.9
HDAC6-208ENST00000438518 CLTCL1P53675 1640 aa26.92■■□□□ 1.9
HDAC6-208ENST00000438518 FOXD1Q16676 465 aa26.92■■□□□ 1.9
HDAC6-208ENST00000438518 KIF1BO60333 1816 aa26.91■■□□□ 1.9
HDAC6-208ENST00000438518 NEURL4Q96JN8 1562 aa26.89■■□□□ 1.9
HDAC6-208ENST00000438518 UHRF1BP1Q6BDS2 1440 aa26.89■■□□□ 1.89
HDAC6-208ENST00000438518 PLPPR3Q6T4P5 718 aa26.88■■□□□ 1.89
HDAC6-208ENST00000438518 CEP170BQ9Y4F5 1589 aaPredicted RBP26.88■■□□□ 1.89
HDAC6-208ENST00000438518 A2ML1A8K2U0 1454 aa26.87■■□□□ 1.89
HDAC6-208ENST00000438518 ADGRB3O60242 1522 aa26.86■■□□□ 1.89
HDAC6-208ENST00000438518 UGGT1Q9NYU2 1555 aa26.86■■□□□ 1.89
HDAC6-208ENST00000438518 UBR1Q8IWV7 1749 aa26.85■■□□□ 1.89
HDAC6-208ENST00000438518 CCER1Q8TC90 406 aaPredicted RBP26.83■■□□□ 1.89
HDAC6-208ENST00000438518 TMEM131LA2VDJ0 1609 aa26.83■■□□□ 1.88
HDAC6-208ENST00000438518 IDI1Q13907 227 aa26.82■■□□□ 1.88
HDAC6-208ENST00000438518 MYO5BQ9ULV0 1848 aa26.76■■□□□ 1.88
HDAC6-208ENST00000438518 STAG3Q9UJ98 1225 aa26.75■■□□□ 1.87
HDAC6-208ENST00000438518 SPATA31E1Q6ZUB1 1445 aa26.74■■□□□ 1.87
HDAC6-208ENST00000438518 LMTK3Q96Q04 1460 aa26.74■■□□□ 1.87
HDAC6-208ENST00000438518 THEMISQ8N1K5 641 aaPredicted RBP26.72■■□□□ 1.87
HDAC6-208ENST00000438518 SLIT1O75093 1534 aa26.71■■□□□ 1.87
HDAC6-208ENST00000438518 CHGAP10645 457 aaKnown RBP26.69■■□□□ 1.86
HDAC6-208ENST00000438518 IFT172Q9UG01 1749 aa26.69■■□□□ 1.86
HDAC6-208ENST00000438518 ARHGAP23Q9P227 1491 aa26.68■■□□□ 1.86
HDAC6-208ENST00000438518 RPGRIP1LQ68CZ1 1315 aa26.68■■□□□ 1.86
HDAC6-208ENST00000438518 PPLO60437 1756 aa26.66■■□□□ 1.86
HDAC6-208ENST00000438518 SIN3AQ96ST3 1273 aa26.66■■□□□ 1.86
HDAC6-208ENST00000438518 TMEM2Q9UHN6 1383 aa26.66■■□□□ 1.86
HDAC6-208ENST00000438518 HDGFP51858 240 aaKnown RBP26.65■■□□□ 1.86
HDAC6-208ENST00000438518 AEBP2Q6ZN18 517 aaPredicted RBP26.65■■□□□ 1.86
HDAC6-208ENST00000438518 STAC3Q96MF2 364 aa26.65■■□□□ 1.86
HDAC6-208ENST00000438518 NEXMIFQ5QGS0 1516 aa26.65■■□□□ 1.86
HDAC6-208ENST00000438518 TIMELESSQ9UNS1 1208 aa26.64■■□□□ 1.86
Retrieved 100 of 20,778 RNA–protein pairs in 92 ms