RNA–Protein interactions for RNA: ENST00000435425.1

SHH-203, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 807 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-203ENST00000435425 RRBP1Q9P2E9 1410 aaKnown RBP28.46■■■□□ 2.15
SHH-203ENST00000435425 MROH2AA6NES4 1674 aa28.46■■■□□ 2.15
SHH-203ENST00000435425 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP28.46■■■□□ 2.15
SHH-203ENST00000435425 ADGRL2O95490 1459 aa28.46■■■□□ 2.15
SHH-203ENST00000435425 PPP6R1Q9UPN7 881 aa28.45■■■□□ 2.14
SHH-203ENST00000435425 ZMYM3Q14202 1370 aa28.43■■■□□ 2.14
SHH-203ENST00000435425 RNF17Q9BXT8 1623 aaKnown RBP28.43■■■□□ 2.14
SHH-203ENST00000435425 ERBINQ96RT1 1412 aa28.43■■■□□ 2.14
SHH-203ENST00000435425 WASHC2CQ9Y4E1 1318 aa28.43■■■□□ 2.14
SHH-203ENST00000435425 KDM5DQ9BY66 1539 aa28.38■■■□□ 2.13
SHH-203ENST00000435425 GRWD1Q9BQ67 446 aaKnown RBP eCLIP28.38■■■□□ 2.132e-7■□□□□ 9.7
SHH-203ENST00000435425 MROH1Q8NDA8 1641 aa28.36■■■□□ 2.13
SHH-203ENST00000435425 PREX1Q8TCU6 1659 aa28.35■■■□□ 2.13
SHH-203ENST00000435425 CEP152O94986 1710 aa28.35■■■□□ 2.13
SHH-203ENST00000435425 ROCK1Q13464 1354 aa28.34■■■□□ 2.13
SHH-203ENST00000435425 SETD1BQ9UPS6 1966 aaKnown RBP28.33■■■□□ 2.13
SHH-203ENST00000435425 ANKRD50Q9ULJ7 1429 aa28.33■■■□□ 2.13
SHH-203ENST00000435425 FAM135AQ9P2D6 1515 aa28.33■■■□□ 2.13
SHH-203ENST00000435425 LMTK3Q96Q04 1460 aa28.32■■■□□ 2.12
SHH-203ENST00000435425 ZC3H13Q5T200 1668 aaKnown RBP28.31■■■□□ 2.12
SHH-203ENST00000435425 DEPDC5O75140 1603 aa28.3■■■□□ 2.12
SHH-203ENST00000435425 ABCC3O15438 1527 aa28.3■■■□□ 2.12
SHH-203ENST00000435425 PRDM15P57071 1507 aaPredicted RBP28.28■■■□□ 2.12
SHH-203ENST00000435425 HSPA2P54652 639 aa28.28■■■□□ 2.12
SHH-203ENST00000435425 KANK1Q14678 1352 aa28.27■■■□□ 2.12
SHH-203ENST00000435425 NPATQ14207 1427 aa28.26■■■□□ 2.12
SHH-203ENST00000435425 UHRF1BP1Q6BDS2 1440 aa28.26■■■□□ 2.12
SHH-203ENST00000435425 CFAP65Q6ZU64 1925 aaKnown RBP28.26■■■□□ 2.11
SHH-203ENST00000435425 FBXO31Q5XUX0 539 aaPredicted RBP28.26■■■□□ 2.11
SHH-203ENST00000435425 CAMSAP1Q5T5Y3 1602 aa28.25■■■□□ 2.11
SHH-203ENST00000435425 PZPP20742 1482 aa28.23■■■□□ 2.11
SHH-203ENST00000435425 MYO3AQ8NEV4 1616 aa28.18■■■□□ 2.1
SHH-203ENST00000435425 VWDEQ8N2E2 1590 aa28.16■■■□□ 2.1
SHH-203ENST00000435425 TNRQ92752 1358 aa28.16■■■□□ 2.1
SHH-203ENST00000435425 UNC13BO14795 1591 aa28.16■■■□□ 2.1
SHH-203ENST00000435425 GCC2Q8IWJ2 1684 aa28.14■■■□□ 2.1
SHH-203ENST00000435425 NAIPQ13075 1403 aa28.12■■■□□ 2.09
SHH-203ENST00000435425 LMTK2Q8IWU2 1503 aa28.12■■■□□ 2.09
SHH-203ENST00000435425 ERVK-7P63135 1459 aa28.1■■■□□ 2.09
SHH-203ENST00000435425 CEP170BQ9Y4F5 1589 aaPredicted RBP28.1■■■□□ 2.09
SHH-203ENST00000435425 ZNF142P52746 1687 aaPredicted RBP28.1■■■□□ 2.09
SHH-203ENST00000435425 ARHGAP31Q2M1Z3 1444 aa28.09■■■□□ 2.09
SHH-203ENST00000435425 SPATA31D1Q6ZQQ2 1576 aa28.08■■■□□ 2.09
SHH-203ENST00000435425 NUP155O75694 1391 aa28.08■■■□□ 2.09
SHH-203ENST00000435425 HFM1A2PYH4 1435 aa28.07■■■□□ 2.08
SHH-203ENST00000435425 EFCAB6Q5THR3 1501 aa28.07■■■□□ 2.08
SHH-203ENST00000435425 TET3O43151 1660 aa28.06■■■□□ 2.08
SHH-203ENST00000435425 A2ML1A8K2U0 1454 aa28.05■■■□□ 2.08
SHH-203ENST00000435425 IQGAP3Q86VI3 1631 aa28.05■■■□□ 2.08
SHH-203ENST00000435425 STRCQ7RTU9 1775 aa28.01■■■□□ 2.08
SHH-203ENST00000435425 NLRP1Q9C000 1473 aa28.01■■■□□ 2.07
SHH-203ENST00000435425 TRIM52Q96A61 297 aa28■■■□□ 2.07
SHH-203ENST00000435425 E9PCH4 1651 aa27.98■■■□□ 2.07
SHH-203ENST00000435425 UGGT1Q9NYU2 1555 aa27.96■■■□□ 2.07
SHH-203ENST00000435425 NCKAP5LQ9HCH0 1330 aa27.94■■■□□ 2.06
SHH-203ENST00000435425 RPRD2Q5VT52 1461 aaKnown RBP27.94■■■□□ 2.06
SHH-203ENST00000435425 SYNMO15061 1565 aa27.94■■■□□ 2.06
SHH-203ENST00000435425 NOS1P29475 1434 aa27.92■■■□□ 2.06
SHH-203ENST00000435425 THEMISQ8N1K5 641 aaPredicted RBP27.92■■■□□ 2.06
SHH-203ENST00000435425 PIK3C2BO00750 1634 aa27.91■■■□□ 2.06
SHH-203ENST00000435425 UBR1Q8IWV7 1749 aa27.9■■■□□ 2.06
SHH-203ENST00000435425 IDI1Q13907 227 aa27.89■■■□□ 2.06
SHH-203ENST00000435425 STAG3Q9UJ98 1225 aa27.89■■■□□ 2.06
SHH-203ENST00000435425 DMRT2Q9Y5R5 561 aa27.89■■■□□ 2.06
SHH-203ENST00000435425 PLA2R1Q13018 1463 aa27.89■■■□□ 2.05
SHH-203ENST00000435425 SETD5Q9C0A6 1442 aa27.88■■■□□ 2.05
SHH-203ENST00000435425 POLR1AO95602 1720 aaPredicted RBP27.84■■■□□ 2.05
SHH-203ENST00000435425 PKD2Q13563 968 aa27.84■■■□□ 2.05
SHH-203ENST00000435425 SLC52A1Q9NWF4 448 aa27.84■■■□□ 2.05
SHH-203ENST00000435425 SLC4A1APQ9BWU0 796 aaKnown RBP27.83■■■□□ 2.05
SHH-203ENST00000435425 ANKLE2Q86XL3 938 aa27.82■■■□□ 2.04
SHH-203ENST00000435425 SPHKAPQ2M3C7 1700 aa27.81■■■□□ 2.04
SHH-203ENST00000435425 PTPRTO14522 1441 aa27.8■■■□□ 2.04
SHH-203ENST00000435425 RAB3GAP2Q9H2M9 1393 aa27.79■■■□□ 2.04
SHH-203ENST00000435425 CHGAP10645 457 aaKnown RBP27.79■■■□□ 2.04
SHH-203ENST00000435425 MYO5BQ9ULV0 1848 aa27.78■■■□□ 2.04
SHH-203ENST00000435425 ADGRB3O60242 1522 aa27.77■■■□□ 2.04
SHH-203ENST00000435425 KDM5AP29375 1690 aaKnown RBP27.76■■■□□ 2.03
SHH-203ENST00000435425 NEURL4Q96JN8 1562 aa27.75■■■□□ 2.03
SHH-203ENST00000435425 FOXD1Q16676 465 aa27.73■■■□□ 2.03
SHH-203ENST00000435425 TXNDC2Q86VQ3 553 aa27.73■■■□□ 2.03
SHH-203ENST00000435425 MPHOSPH9Q99550 1183 aa27.73■■■□□ 2.03
SHH-203ENST00000435425 TMEM131LA2VDJ0 1609 aa27.71■■■□□ 2.03
SHH-203ENST00000435425 EID1Q9Y6B2 187 aa27.71■■■□□ 2.03
SHH-203ENST00000435425 SLIT1O75093 1534 aa27.71■■■□□ 2.03
SHH-203ENST00000435425 TMEM2Q9UHN6 1383 aa27.71■■■□□ 2.03
SHH-203ENST00000435425 ARHGAP23Q9P227 1491 aa27.7■■■□□ 2.03
SHH-203ENST00000435425 LTKP29376 864 aa27.7■■■□□ 2.02
SHH-203ENST00000435425 NPHP4O75161 1426 aaPredicted RBP27.69■■■□□ 2.02
SHH-203ENST00000435425 SCAF11Q99590 1463 aaKnown RBP27.69■■■□□ 2.02
SHH-203ENST00000435425 ACIN1Q9UKV3 1341 aaKnown RBP27.68■■■□□ 2.02
SHH-203ENST00000435425 IQGAP1P46940 1657 aa27.68■■■□□ 2.02
SHH-203ENST00000435425 CLTCL1P53675 1640 aa27.67■■■□□ 2.02
SHH-203ENST00000435425 TRPM2O94759 1503 aa27.67■■■□□ 2.02
SHH-203ENST00000435425 MED14O60244 1454 aa27.65■■■□□ 2.02
SHH-203ENST00000435425 SENP3Q9H4L4 574 aaPredicted RBP27.64■■■□□ 2.02
SHH-203ENST00000435425 KIF1BO60333 1816 aa27.62■■■□□ 2.01
SHH-203ENST00000435425 ZNF335Q9H4Z2 1342 aaPredicted RBP27.62■■■□□ 2.01
SHH-203ENST00000435425 RIMS2Q9UQ26 1411 aa27.61■■■□□ 2.01
SHH-203ENST00000435425 ZNF326Q5BKZ1 582 aaKnown RBP27.6■■■□□ 2.01
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms