RNA–Protein interactions for RNA: ENST00000430158.5

USP40-205, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 1,047 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-205ENST00000430158 KDM4FA0A1W2PPD8 638 aa19■□□□□ 0.63
USP40-205ENST00000430158 ADAMTSL3P82987 1691 aa18.99■□□□□ 0.63
USP40-205ENST00000430158 CHIC2Q9UKJ5 165 aa18.99■□□□□ 0.63
USP40-205ENST00000430158 ROCK1Q13464 1354 aa18.97■□□□□ 0.63
USP40-205ENST00000430158 ANKRD30AQ9BXX3 1397 aa18.96■□□□□ 0.63
USP40-205ENST00000430158 KIF15Q9NS87 1388 aa18.96■□□□□ 0.63
USP40-205ENST00000430158 DUOX2Q9NRD8 1548 aa18.96■□□□□ 0.63
USP40-205ENST00000430158 RRP7BPQ9NSQ0 103 aa18.95■□□□□ 0.62
USP40-205ENST00000430158 ARID4BQ4LE39 1312 aaPredicted RBP18.95■□□□□ 0.62
USP40-205ENST00000430158 ITGAEP38570 1179 aa18.92■□□□□ 0.62
USP40-205ENST00000430158 EIF2AK4Q9P2K8 1649 aaKnown RBP18.91■□□□□ 0.62
USP40-205ENST00000430158 ERBINQ96RT1 1412 aa18.91■□□□□ 0.62
USP40-205ENST00000430158 MADDQ8WXG6 1647 aa18.89■□□□□ 0.62
USP40-205ENST00000430158 RNF17Q9BXT8 1623 aaKnown RBP18.89■□□□□ 0.62
USP40-205ENST00000430158 MROH1Q8NDA8 1641 aa18.89■□□□□ 0.61
USP40-205ENST00000430158 KIF3BO15066 747 aa18.88■□□□□ 0.61
USP40-205ENST00000430158 MLECQ14165 292 aa18.88■□□□□ 0.61
USP40-205ENST00000430158 FER1L4A9Z1Z3 1794 aa18.86■□□□□ 0.61
USP40-205ENST00000430158 ANKRD50Q9ULJ7 1429 aa18.86■□□□□ 0.61
USP40-205ENST00000430158 DEPDC5O75140 1603 aa18.85■□□□□ 0.61
USP40-205ENST00000430158 NAIPQ13075 1403 aa18.85■□□□□ 0.61
USP40-205ENST00000430158 HFM1A2PYH4 1435 aa18.83■□□□□ 0.61
USP40-205ENST00000430158 RIMS1Q86UR5 1692 aaKnown RBP18.83■□□□□ 0.61
USP40-205ENST00000430158 GGT6Q6P531 493 aa18.83■□□□□ 0.6
USP40-205ENST00000430158 PTPRMP28827 1452 aa18.82■□□□□ 0.6
USP40-205ENST00000430158 GCC2Q8IWJ2 1684 aa18.82■□□□□ 0.6
USP40-205ENST00000430158 VWDEQ8N2E2 1590 aa18.81■□□□□ 0.6
USP40-205ENST00000430158 PRDM15P57071 1507 aaPredicted RBP18.81■□□□□ 0.6
USP40-205ENST00000430158 KDM5DQ9BY66 1539 aa18.81■□□□□ 0.6
USP40-205ENST00000430158 FAM135AQ9P2D6 1515 aa18.8■□□□□ 0.6
USP40-205ENST00000430158 CNTLNQ9NXG0 1405 aa18.79■□□□□ 0.6
USP40-205ENST00000430158 MROH2AA6NES4 1674 aa18.79■□□□□ 0.6
USP40-205ENST00000430158 CLTCQ00610 1675 aaKnown RBP18.79■□□□□ 0.6
USP40-205ENST00000430158 ABCC3O15438 1527 aa18.78■□□□□ 0.6
USP40-205ENST00000430158 UNC13BO14795 1591 aa18.77■□□□□ 0.6
USP40-205ENST00000430158 C3P01024 1663 aa18.76■□□□□ 0.59
USP40-205ENST00000430158 ZMYM3Q14202 1370 aa18.75■□□□□ 0.59
USP40-205ENST00000430158 LMTK2Q8IWU2 1503 aa18.74■□□□□ 0.59
USP40-205ENST00000430158 CEP152O94986 1710 aa18.74■□□□□ 0.59
USP40-205ENST00000430158 SETD1BQ9UPS6 1966 aaKnown RBP18.73■□□□□ 0.59
USP40-205ENST00000430158 ZC3H13Q5T200 1668 aaKnown RBP18.73■□□□□ 0.59
USP40-205ENST00000430158 CEBPAP49715 358 aaPredicted RBP18.73■□□□□ 0.59
USP40-205ENST00000430158 WASHC2CQ9Y4E1 1318 aa18.73■□□□□ 0.59
USP40-205ENST00000430158 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.7■□□□□ 0.582e-6■■■□□ 16.3
USP40-205ENST00000430158 ARHGAP31Q2M1Z3 1444 aa18.69■□□□□ 0.58
USP40-205ENST00000430158 SETD5Q9C0A6 1442 aa18.69■□□□□ 0.58
USP40-205ENST00000430158 ESF1Q9H501 851 aaKnown RBP18.69■□□□□ 0.58
USP40-205ENST00000430158 CAMSAP1Q5T5Y3 1602 aa18.69■□□□□ 0.58
USP40-205ENST00000430158 IQGAP3Q86VI3 1631 aa18.69■□□□□ 0.58
USP40-205ENST00000430158 PZPP20742 1482 aa18.68■□□□□ 0.58
USP40-205ENST00000430158 KANK1Q14678 1352 aa18.68■□□□□ 0.58
USP40-205ENST00000430158 CFAP65Q6ZU64 1925 aaKnown RBP18.67■□□□□ 0.58
USP40-205ENST00000430158 TET3O43151 1660 aa18.66■□□□□ 0.58
USP40-205ENST00000430158 NUP155O75694 1391 aa18.66■□□□□ 0.58
USP40-205ENST00000430158 NPATQ14207 1427 aa18.66■□□□□ 0.58
USP40-205ENST00000430158 TRIM26Q12899 539 aaPredicted RBP18.65■□□□□ 0.58
USP40-205ENST00000430158 FBXO31Q5XUX0 539 aaPredicted RBP18.65■□□□□ 0.58
USP40-205ENST00000430158 EFCAB6Q5THR3 1501 aa18.64■□□□□ 0.58
USP40-205ENST00000430158 RAB3GAP2Q9H2M9 1393 aa18.63■□□□□ 0.57
USP40-205ENST00000430158 HRCP23327 699 aa18.62■□□□□ 0.57
USP40-205ENST00000430158 SPATA31D1Q6ZQQ2 1576 aa18.62■□□□□ 0.57
USP40-205ENST00000430158 E9PCH4 1651 aa18.6■□□□□ 0.57
USP40-205ENST00000430158 ERVK-7P63135 1459 aa18.6■□□□□ 0.57
USP40-205ENST00000430158 PREX1Q8TCU6 1659 aa18.6■□□□□ 0.57
USP40-205ENST00000430158 NCBP3Q53F19 620 aaKnown RBP18.59■□□□□ 0.57
USP40-205ENST00000430158 RPRD2Q5VT52 1461 aaKnown RBP18.58■□□□□ 0.57
USP40-205ENST00000430158 NOS1P29475 1434 aa18.58■□□□□ 0.57
USP40-205ENST00000430158 LMTK3Q96Q04 1460 aa18.57■□□□□ 0.56
USP40-205ENST00000430158 TNRQ92752 1358 aa18.56■□□□□ 0.56
USP40-205ENST00000430158 ACIN1Q9UKV3 1341 aaKnown RBP18.55■□□□□ 0.56
USP40-205ENST00000430158 TRIM52Q96A61 297 aa18.55■□□□□ 0.56
USP40-205ENST00000430158 SYNMO15061 1565 aa18.55■□□□□ 0.56
USP40-205ENST00000430158 MYO3AQ8NEV4 1616 aa18.54■□□□□ 0.56
USP40-205ENST00000430158 PTPRTO14522 1441 aa18.53■□□□□ 0.56
USP40-205ENST00000430158 MPHOSPH9Q99550 1183 aa18.52■□□□□ 0.56
USP40-205ENST00000430158 ZNF142P52746 1687 aaPredicted RBP18.52■□□□□ 0.56
USP40-205ENST00000430158 PLA2R1Q13018 1463 aa18.52■□□□□ 0.55
USP40-205ENST00000430158 PKD2Q13563 968 aa18.51■□□□□ 0.55
USP40-205ENST00000430158 UHRF1BP1Q6BDS2 1440 aa18.5■□□□□ 0.55
USP40-205ENST00000430158 SLC4A1APQ9BWU0 796 aaKnown RBP18.5■□□□□ 0.55
USP40-205ENST00000430158 A2ML1A8K2U0 1454 aa18.5■□□□□ 0.55
USP40-205ENST00000430158 NLRP1Q9C000 1473 aa18.5■□□□□ 0.55
USP40-205ENST00000430158 CEP170BQ9Y4F5 1589 aaPredicted RBP18.49■□□□□ 0.55
USP40-205ENST00000430158 PIK3C2BO00750 1634 aa18.49■□□□□ 0.55
USP40-205ENST00000430158 SPHKAPQ2M3C7 1700 aa18.47■□□□□ 0.55
USP40-205ENST00000430158 IDI1Q13907 227 aa18.47■□□□□ 0.55
USP40-205ENST00000430158 UGGT1Q9NYU2 1555 aa18.45■□□□□ 0.54
USP40-205ENST00000430158 UBR1Q8IWV7 1749 aa18.44■□□□□ 0.54
USP40-205ENST00000430158 HSPA2P54652 639 aa18.44■□□□□ 0.54
USP40-205ENST00000430158 SLC52A1Q9NWF4 448 aa18.44■□□□□ 0.54
USP40-205ENST00000430158 TRPM2O94759 1503 aa18.44■□□□□ 0.54
USP40-205ENST00000430158 KDM5AP29375 1690 aaKnown RBP18.42■□□□□ 0.54
USP40-205ENST00000430158 NPM3O75607 178 aaKnown RBP18.42■□□□□ 0.54
USP40-205ENST00000430158 STRCQ7RTU9 1775 aa18.4■□□□□ 0.54
USP40-205ENST00000430158 MYO5BQ9ULV0 1848 aa18.4■□□□□ 0.54
USP40-205ENST00000430158 PCGF6Q9BYE7 350 aa18.4■□□□□ 0.54
USP40-205ENST00000430158 TMEM131LA2VDJ0 1609 aa18.4■□□□□ 0.54
USP40-205ENST00000430158 CLTCL1P53675 1640 aa18.4■□□□□ 0.54
USP40-205ENST00000430158 ANKRD30BQ9BXX2 1392 aa18.39■□□□□ 0.53
USP40-205ENST00000430158 ARHGAP23Q9P227 1491 aa18.38■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 73.5 ms