RNA–Protein interactions for RNA: ENST00000425436.7

SHOX2-202, Transcript of short stature homeobox 2, humanhuman

TSL 5 BASIC

Gene SHOX2, Length 1,513 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-202ENST00000425436 ERBINQ96RT1 1412 aa23.31■■□□□ 1.32
SHOX2-202ENST00000425436 GRWD1Q9BQ67 446 aaKnown RBP eCLIP23.29■■□□□ 1.32
SHOX2-202ENST00000425436 MADDQ8WXG6 1647 aa23.29■■□□□ 1.32
SHOX2-202ENST00000425436 EIF2AK4Q9P2K8 1649 aaKnown RBP23.28■■□□□ 1.32
SHOX2-202ENST00000425436 NAIPQ13075 1403 aa23.28■■□□□ 1.32
SHOX2-202ENST00000425436 FER1L4A9Z1Z3 1794 aa23.26■■□□□ 1.31
SHOX2-202ENST00000425436 PLPPR3Q6T4P5 718 aa23.26■■□□□ 1.31
SHOX2-202ENST00000425436 ESF1Q9H501 851 aaKnown RBP23.26■■□□□ 1.31
SHOX2-202ENST00000425436 HFM1A2PYH4 1435 aa23.24■■□□□ 1.31
SHOX2-202ENST00000425436 RIMS1Q86UR5 1692 aaKnown RBP23.24■■□□□ 1.31
SHOX2-202ENST00000425436 RNF17Q9BXT8 1623 aaKnown RBP23.23■■□□□ 1.31
SHOX2-202ENST00000425436 GCC2Q8IWJ2 1684 aa23.22■■□□□ 1.31
SHOX2-202ENST00000425436 WASHC2CQ9Y4E1 1318 aa23.22■■□□□ 1.31
SHOX2-202ENST00000425436 MROH1Q8NDA8 1641 aa23.22■■□□□ 1.31
SHOX2-202ENST00000425436 CLTCQ00610 1675 aaKnown RBP23.2■■□□□ 1.31
SHOX2-202ENST00000425436 PPP6R1Q9UPN7 881 aa23.2■■□□□ 1.3
SHOX2-202ENST00000425436 CEBPAP49715 358 aaPredicted RBP23.19■■□□□ 1.3
SHOX2-202ENST00000425436 DEPDC5O75140 1603 aa23.18■■□□□ 1.3
SHOX2-202ENST00000425436 PTPRMP28827 1452 aa23.17■■□□□ 1.3
SHOX2-202ENST00000425436 SETD5Q9C0A6 1442 aa23.15■■□□□ 1.3
SHOX2-202ENST00000425436 PRDM15P57071 1507 aaPredicted RBP23.15■■□□□ 1.3
SHOX2-202ENST00000425436 CCER1Q8TC90 406 aaPredicted RBP23.15■■□□□ 1.3
SHOX2-202ENST00000425436 ZMYM3Q14202 1370 aa23.15■■□□□ 1.3
SHOX2-202ENST00000425436 KANK1Q14678 1352 aa23.15■■□□□ 1.3
SHOX2-202ENST00000425436 CEP152O94986 1710 aa23.15■■□□□ 1.3
SHOX2-202ENST00000425436 KDM5DQ9BY66 1539 aa23.14■■□□□ 1.3
SHOX2-202ENST00000425436 CNTLNQ9NXG0 1405 aa23.14■■□□□ 1.29
SHOX2-202ENST00000425436 TRIM52Q96A61 297 aa23.13■■□□□ 1.29
SHOX2-202ENST00000425436 ABCC3O15438 1527 aa23.13■■□□□ 1.29
SHOX2-202ENST00000425436 UNC13BO14795 1591 aa23.13■■□□□ 1.29
SHOX2-202ENST00000425436 NUP155O75694 1391 aa23.13■■□□□ 1.29
SHOX2-202ENST00000425436 C3P01024 1663 aa23.11■■□□□ 1.29
SHOX2-202ENST00000425436 MROH2AA6NES4 1674 aa23.1■■□□□ 1.29
SHOX2-202ENST00000425436 RAB3GAP2Q9H2M9 1393 aa23.1■■□□□ 1.29
SHOX2-202ENST00000425436 VWDEQ8N2E2 1590 aa23.09■■□□□ 1.29
SHOX2-202ENST00000425436 CFAP65Q6ZU64 1925 aaKnown RBP23.09■■□□□ 1.29
SHOX2-202ENST00000425436 ZC3H13Q5T200 1668 aaKnown RBP23.08■■□□□ 1.29
SHOX2-202ENST00000425436 FAM135AQ9P2D6 1515 aa23.07■■□□□ 1.28
SHOX2-202ENST00000425436 FBXO31Q5XUX0 539 aaPredicted RBP23.07■■□□□ 1.28
SHOX2-202ENST00000425436 CAMSAP1Q5T5Y3 1602 aa23.06■■□□□ 1.28
SHOX2-202ENST00000425436 IQGAP3Q86VI3 1631 aa23.04■■□□□ 1.28
SHOX2-202ENST00000425436 LMTK2Q8IWU2 1503 aa23.03■■□□□ 1.28
SHOX2-202ENST00000425436 PZPP20742 1482 aa23■■□□□ 1.27
SHOX2-202ENST00000425436 NPATQ14207 1427 aa23■■□□□ 1.27
SHOX2-202ENST00000425436 TET3O43151 1660 aa22.99■■□□□ 1.27
SHOX2-202ENST00000425436 SLC4A1APQ9BWU0 796 aaKnown RBP22.99■■□□□ 1.27
SHOX2-202ENST00000425436 EFCAB6Q5THR3 1501 aa22.98■■□□□ 1.27
SHOX2-202ENST00000425436 ARHGAP31Q2M1Z3 1444 aa22.97■■□□□ 1.27
SHOX2-202ENST00000425436 MPHOSPH9Q99550 1183 aa22.96■■□□□ 1.27
SHOX2-202ENST00000425436 E9PCH4 1651 aa22.96■■□□□ 1.27
SHOX2-202ENST00000425436 PKD2Q13563 968 aa22.95■■□□□ 1.26
SHOX2-202ENST00000425436 SETD1BQ9UPS6 1966 aaKnown RBP22.94■■□□□ 1.26
SHOX2-202ENST00000425436 FOXD1Q16676 465 aa22.93■■□□□ 1.26
SHOX2-202ENST00000425436 PREX1Q8TCU6 1659 aa22.93■■□□□ 1.26
SHOX2-202ENST00000425436 ERVK-7P63135 1459 aa22.92■■□□□ 1.26
SHOX2-202ENST00000425436 ACIN1Q9UKV3 1341 aaKnown RBP22.92■■□□□ 1.26
SHOX2-202ENST00000425436 TNRQ92752 1358 aa22.92■■□□□ 1.26
SHOX2-202ENST00000425436 SPATA31D1Q6ZQQ2 1576 aa22.9■■□□□ 1.26
SHOX2-202ENST00000425436 RPRD2Q5VT52 1461 aaKnown RBP22.89■■□□□ 1.25
SHOX2-202ENST00000425436 CLSPNQ9HAW4 1339 aa22.87■■□□□ 1.25
SHOX2-202ENST00000425436 NOS1P29475 1434 aa22.86■■□□□ 1.25
SHOX2-202ENST00000425436 SYNMO15061 1565 aa22.85■■□□□ 1.25
SHOX2-202ENST00000425436 MYO3AQ8NEV4 1616 aa22.85■■□□□ 1.25
SHOX2-202ENST00000425436 UHRF1BP1Q6BDS2 1440 aa22.85■■□□□ 1.25
SHOX2-202ENST00000425436 IDI1Q13907 227 aa22.83■■□□□ 1.25
SHOX2-202ENST00000425436 HSPA2P54652 639 aa22.82■■□□□ 1.24
SHOX2-202ENST00000425436 LMTK3Q96Q04 1460 aa22.82■■□□□ 1.24
SHOX2-202ENST00000425436 SPHKAPQ2M3C7 1700 aa22.81■■□□□ 1.24
SHOX2-202ENST00000425436 UGGT1Q9NYU2 1555 aa22.8■■□□□ 1.24
SHOX2-202ENST00000425436 PLA2R1Q13018 1463 aa22.79■■□□□ 1.24
SHOX2-202ENST00000425436 PTPRTO14522 1441 aa22.79■■□□□ 1.24
SHOX2-202ENST00000425436 NLRP1Q9C000 1473 aa22.79■■□□□ 1.24
SHOX2-202ENST00000425436 SLC52A1Q9NWF4 448 aa22.78■■□□□ 1.24
SHOX2-202ENST00000425436 CEP170BQ9Y4F5 1589 aaPredicted RBP22.78■■□□□ 1.24
SHOX2-202ENST00000425436 A2ML1A8K2U0 1454 aa22.77■■□□□ 1.24
SHOX2-202ENST00000425436 PIK3C2BO00750 1634 aa22.76■■□□□ 1.23
SHOX2-202ENST00000425436 CHGAP10645 457 aaKnown RBP22.76■■□□□ 1.23
SHOX2-202ENST00000425436 STAG3Q9UJ98 1225 aa22.76■■□□□ 1.23
SHOX2-202ENST00000425436 ZNF142P52746 1687 aaPredicted RBP22.75■■□□□ 1.23
SHOX2-202ENST00000425436 TRPM2O94759 1503 aa22.73■■□□□ 1.23
SHOX2-202ENST00000425436 UBR1Q8IWV7 1749 aa22.72■■□□□ 1.23
SHOX2-202ENST00000425436 THEMISQ8N1K5 641 aaPredicted RBP22.72■■□□□ 1.23
SHOX2-202ENST00000425436 CLTCL1P53675 1640 aa22.71■■□□□ 1.23
SHOX2-202ENST00000425436 DHX57Q6P158 1386 aaKnown RBP22.7■■□□□ 1.22
SHOX2-202ENST00000425436 MYO5BQ9ULV0 1848 aa22.7■■□□□ 1.22
SHOX2-202ENST00000425436 ANKRD30BQ9BXX2 1392 aa22.69■■□□□ 1.22
SHOX2-202ENST00000425436 CCDC144AA2RUR9 1427 aa22.67■■□□□ 1.22
SHOX2-202ENST00000425436 TMEM131LA2VDJ0 1609 aa22.66■■□□□ 1.22
SHOX2-202ENST00000425436 ADGRB3O60242 1522 aa22.65■■□□□ 1.22
SHOX2-202ENST00000425436 NCKAP5LQ9HCH0 1330 aa22.65■■□□□ 1.22
SHOX2-202ENST00000425436 KIF1BO60333 1816 aa22.65■■□□□ 1.22
SHOX2-202ENST00000425436 ZNF326Q5BKZ1 582 aaKnown RBP22.63■■□□□ 1.21
SHOX2-202ENST00000425436 KDM5AP29375 1690 aaKnown RBP22.62■■□□□ 1.21
SHOX2-202ENST00000425436 RGL3Q3MIN7 710 aa22.61■■□□□ 1.21
SHOX2-202ENST00000425436 NUTM2DQ5VT03 806 aaPredicted RBP22.61■■□□□ 1.21
SHOX2-202ENST00000425436 TMEM2Q9UHN6 1383 aa22.61■■□□□ 1.21
SHOX2-202ENST00000425436 STRCQ7RTU9 1775 aa22.6■■□□□ 1.21
SHOX2-202ENST00000425436 LTKP29376 864 aa22.6■■□□□ 1.21
SHOX2-202ENST00000425436 TXNDC2Q86VQ3 553 aa22.6■■□□□ 1.21
SHOX2-202ENST00000425436 ANKLE2Q86XL3 938 aa22.6■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms