RNA–Protein interactions for RNA: ENST00000423635.5

CHCHD3-202, Transcript of coiled-coil-helix-coiled-coil-helix domain containing 3, humanhuman

TSL 1 (best)

Gene CHCHD3, Length 1,310 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHCHD3-202ENST00000423635 TNRQ92752 1358 aa27.11■■□□□ 1.93
CHCHD3-202ENST00000423635 TIAM1Q13009 1591 aa27.1■■□□□ 1.93
CHCHD3-202ENST00000423635 KIF3BO15066 747 aa27.1■■□□□ 1.93
CHCHD3-202ENST00000423635 SHANK2Q9UPX8 1470 aa27.09■■□□□ 1.93
CHCHD3-202ENST00000423635 PIP4K2BP78356 416 aa27.08■■□□□ 1.93
CHCHD3-202ENST00000423635 ANKLE2Q86XL3 938 aa27.08■■□□□ 1.93
CHCHD3-202ENST00000423635 NEURL4Q96JN8 1562 aa27.08■■□□□ 1.93
CHCHD3-202ENST00000423635 PZPP20742 1482 aa27.07■■□□□ 1.92
CHCHD3-202ENST00000423635 RSPH4AQ5TD94 716 aa27.07■■□□□ 1.92
CHCHD3-202ENST00000423635 FAM135AQ9P2D6 1515 aa27.06■■□□□ 1.92
CHCHD3-202ENST00000423635 CEP162Q5TB80 1403 aa27.06■■□□□ 1.92
CHCHD3-202ENST00000423635 THEMISQ8N1K5 641 aaPredicted RBP27.06■■□□□ 1.92
CHCHD3-202ENST00000423635 SCAF1Q9H7N4 1312 aaKnown RBP27.06■■□□□ 1.92
CHCHD3-202ENST00000423635 POLR1AO95602 1720 aaPredicted RBP27.05■■□□□ 1.92
CHCHD3-202ENST00000423635 WASHC2CQ9Y4E1 1318 aa27.04■■□□□ 1.92
CHCHD3-202ENST00000423635 EHBP1L1Q8N3D4 1523 aa27.03■■□□□ 1.92
CHCHD3-202ENST00000423635 KDM5DQ9BY66 1539 aa27.03■■□□□ 1.92
CHCHD3-202ENST00000423635 MIA2Q96PC5 1412 aa27.03■■□□□ 1.92
CHCHD3-202ENST00000423635 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP27.02■■□□□ 1.92
CHCHD3-202ENST00000423635 MED1Q15648 1581 aaPredicted RBP27.01■■□□□ 1.92
CHCHD3-202ENST00000423635 MED14O60244 1454 aa27■■□□□ 1.91
CHCHD3-202ENST00000423635 CCDC141Q6ZP82 1450 aa26.99■■□□□ 1.91
CHCHD3-202ENST00000423635 NLRP1Q9C000 1473 aa26.99■■□□□ 1.91
CHCHD3-202ENST00000423635 VWDEQ8N2E2 1590 aa26.98■■□□□ 1.91
CHCHD3-202ENST00000423635 NPHP4O75161 1426 aaPredicted RBP26.96■■□□□ 1.91
CHCHD3-202ENST00000423635 UGGT1Q9NYU2 1555 aa26.95■■□□□ 1.91
CHCHD3-202ENST00000423635 DEPDC5O75140 1603 aa26.95■■□□□ 1.9
CHCHD3-202ENST00000423635 CAMSAP2Q08AD1 1489 aa26.93■■□□□ 1.9
CHCHD3-202ENST00000423635 ALKQ9UM73 1620 aa26.92■■□□□ 1.9
CHCHD3-202ENST00000423635 TSPY4P0CV99 314 aa26.9■■□□□ 1.9
CHCHD3-202ENST00000423635 TSPY10P0CW01 314 aa26.9■■□□□ 1.9
CHCHD3-202ENST00000423635 NCOA2Q15596 1464 aa26.9■■□□□ 1.9
CHCHD3-202ENST00000423635 ARHGEF5Q12774 1597 aa26.86■■□□□ 1.89
CHCHD3-202ENST00000423635 PHF23Q9BUL5 403 aaPredicted RBP26.85■■□□□ 1.89
CHCHD3-202ENST00000423635 IQGAP1P46940 1657 aa26.84■■□□□ 1.89
CHCHD3-202ENST00000423635 LRRC7Q96NW7 1537 aa26.83■■□□□ 1.89
CHCHD3-202ENST00000423635 STRCP1A6NGW2 1772 aa26.79■■□□□ 1.88
CHCHD3-202ENST00000423635 ABCC3O15438 1527 aa26.79■■□□□ 1.88
CHCHD3-202ENST00000423635 RNF17Q9BXT8 1623 aaKnown RBP26.79■■□□□ 1.88
CHCHD3-202ENST00000423635 ERVK-7P63135 1459 aa26.77■■□□□ 1.88
CHCHD3-202ENST00000423635 ZC3H13Q5T200 1668 aaKnown RBP26.76■■□□□ 1.87
CHCHD3-202ENST00000423635 SYNMO15061 1565 aa26.74■■□□□ 1.87
CHCHD3-202ENST00000423635 MAST1Q9Y2H9 1570 aa26.74■■□□□ 1.87
CHCHD3-202ENST00000423635 EIF2AK4Q9P2K8 1649 aaKnown RBP26.7■■□□□ 1.87
CHCHD3-202ENST00000423635 LTKP29376 864 aa26.69■■□□□ 1.86
CHCHD3-202ENST00000423635 SCAF11Q99590 1463 aaKnown RBP26.69■■□□□ 1.86
CHCHD3-202ENST00000423635 MROH1Q8NDA8 1641 aa26.69■■□□□ 1.86
CHCHD3-202ENST00000423635 SENP3Q9H4L4 574 aaPredicted RBP26.68■■□□□ 1.86
CHCHD3-202ENST00000423635 UBR1Q8IWV7 1749 aa26.68■■□□□ 1.86
CHCHD3-202ENST00000423635 TXNDC2Q86VQ3 553 aa26.67■■□□□ 1.86
CHCHD3-202ENST00000423635 RGS17Q9UGC6 210 aaPredicted RBP26.67■■□□□ 1.86
CHCHD3-202ENST00000423635 LRRC9Q6ZRR7 1453 aa26.67■■□□□ 1.86
CHCHD3-202ENST00000423635 ARHGAP23Q9P227 1491 aa26.67■■□□□ 1.86
CHCHD3-202ENST00000423635 SLIT1O75093 1534 aa26.65■■□□□ 1.86
CHCHD3-202ENST00000423635 ARHGAP31Q2M1Z3 1444 aa26.64■■□□□ 1.85
CHCHD3-202ENST00000423635 CFAP65Q6ZU64 1925 aaKnown RBP26.62■■□□□ 1.85
CHCHD3-202ENST00000423635 EID1Q9Y6B2 187 aa26.61■■□□□ 1.85
CHCHD3-202ENST00000423635 DUOX2Q9NRD8 1548 aa26.61■■□□□ 1.85
CHCHD3-202ENST00000423635 CEP152O94986 1710 aa26.6■■□□□ 1.85
CHCHD3-202ENST00000423635 FAM135BQ49AJ0 1406 aa26.6■■□□□ 1.85
CHCHD3-202ENST00000423635 MYOM3Q5VTT5 1437 aa26.59■■□□□ 1.85
CHCHD3-202ENST00000423635 KANK4Q5T7N3 995 aaPredicted RBP26.57■■□□□ 1.84
CHCHD3-202ENST00000423635 XIRP1Q702N8 1843 aaKnown RBP26.57■■□□□ 1.84
CHCHD3-202ENST00000423635 VPS8Q8N3P4 1428 aa26.55■■□□□ 1.84
CHCHD3-202ENST00000423635 TMEM2Q9UHN6 1383 aa26.55■■□□□ 1.84
CHCHD3-202ENST00000423635 PRDM15P57071 1507 aaPredicted RBP26.53■■□□□ 1.84
CHCHD3-202ENST00000423635 MAP3K1Q13233 1512 aa26.53■■□□□ 1.84
CHCHD3-202ENST00000423635 KIF15Q9NS87 1388 aa26.52■■□□□ 1.84
CHCHD3-202ENST00000423635 ERBINQ96RT1 1412 aa26.52■■□□□ 1.84
CHCHD3-202ENST00000423635 KCNA6P17658 529 aa26.51■■□□□ 1.83
CHCHD3-202ENST00000423635 TMEM94Q12767 1356 aa26.49■■□□□ 1.83
CHCHD3-202ENST00000423635 RRP7BPQ9NSQ0 103 aa26.49■■□□□ 1.83
CHCHD3-202ENST00000423635 STAG3Q9UJ98 1225 aa26.48■■□□□ 1.83
CHCHD3-202ENST00000423635 PIK3C2BO00750 1634 aa26.48■■□□□ 1.83
CHCHD3-202ENST00000423635 IDI1Q13907 227 aa26.47■■□□□ 1.83
CHCHD3-202ENST00000423635 ABCC5O15440 1437 aa26.47■■□□□ 1.83
CHCHD3-202ENST00000423635 POTEAQ6S8J7 498 aa26.46■■□□□ 1.83
CHCHD3-202ENST00000423635 GRWD1Q9BQ67 446 aaKnown RBP eCLIP26.46■■□□□ 1.831e-7■■□□□ 12
CHCHD3-202ENST00000423635 TET3O43151 1660 aa26.44■■□□□ 1.82
CHCHD3-202ENST00000423635 KDM5AP29375 1690 aaKnown RBP26.44■■□□□ 1.82
CHCHD3-202ENST00000423635 KANK1Q14678 1352 aa26.44■■□□□ 1.82
CHCHD3-202ENST00000423635 PROSER2Q86WR7 435 aaPredicted RBP26.43■■□□□ 1.82
CHCHD3-202ENST00000423635 EFCAB6Q5THR3 1501 aa26.43■■□□□ 1.82
CHCHD3-202ENST00000423635 SLC26A8Q96RN1 970 aa26.41■■□□□ 1.82
CHCHD3-202ENST00000423635 LMTK2Q8IWU2 1503 aa26.4■■□□□ 1.82
CHCHD3-202ENST00000423635 ROBO1Q9Y6N7 1651 aa26.38■■□□□ 1.81
CHCHD3-202ENST00000423635 RBM33Q96EV2 1170 aaKnown RBP26.38■■□□□ 1.81
CHCHD3-202ENST00000423635 CROCC2H7BZ55 1655 aa26.37■■□□□ 1.81
CHCHD3-202ENST00000423635 NOS1P29475 1434 aa26.36■■□□□ 1.81
CHCHD3-202ENST00000423635 DAPK1P53355 1430 aa26.36■■□□□ 1.81
CHCHD3-202ENST00000423635 LOC105371045A0A1W2PR82 267 aa26.36■■□□□ 1.81
CHCHD3-202ENST00000423635 SLC52A1Q9NWF4 448 aa26.35■■□□□ 1.81
CHCHD3-202ENST00000423635 SLAIN2Q9P270 581 aa26.34■■□□□ 1.81
CHCHD3-202ENST00000423635 PTPN23Q9H3S7 1636 aa26.33■■□□□ 1.81
CHCHD3-202ENST00000423635 NKTRP30414 1462 aaKnown RBP26.33■■□□□ 1.81
CHCHD3-202ENST00000423635 ANKRD30AQ9BXX3 1397 aa26.32■■□□□ 1.8
CHCHD3-202ENST00000423635 NWD1Q149M9 1564 aa26.31■■□□□ 1.8
CHCHD3-202ENST00000423635 MSH6P52701 1360 aa26.3■■□□□ 1.8
CHCHD3-202ENST00000423635 ADGRB3O60242 1522 aa26.28■■□□□ 1.8
CHCHD3-202ENST00000423635 CHIC2Q9UKJ5 165 aa26.28■■□□□ 1.8
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms