RNA–Protein interactions for RNA: ENST00000423575.5

LINC00539-202, long intergenic non-protein coding RNA 539, humanhuman

TSL 3 BASIC

Gene LINC00539, Length 699 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-202ENST00000423575 SETD5Q9C0A6 1442 aa18.16■□□□□ 0.5
LINC00539-202ENST00000423575 PRDM15P57071 1507 aaPredicted RBP18.16■□□□□ 0.5
LINC00539-202ENST00000423575 ADAMTSL3P82987 1691 aa18.15■□□□□ 0.5
LINC00539-202ENST00000423575 UNC13BO14795 1591 aa18.14■□□□□ 0.49
LINC00539-202ENST00000423575 RAB3GAP2Q9H2M9 1393 aa18.14■□□□□ 0.49
LINC00539-202ENST00000423575 MADDQ8WXG6 1647 aa18.13■□□□□ 0.49
LINC00539-202ENST00000423575 KDM4FA0A1W2PPD8 638 aa18.13■□□□□ 0.49
LINC00539-202ENST00000423575 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.13■□□□□ 0.49
LINC00539-202ENST00000423575 KDM5DQ9BY66 1539 aa18.12■□□□□ 0.49
LINC00539-202ENST00000423575 PPP6R1Q9UPN7 881 aa18.11■□□□□ 0.49
LINC00539-202ENST00000423575 ABCC3O15438 1527 aa18.11■□□□□ 0.49
LINC00539-202ENST00000423575 FAM135AQ9P2D6 1515 aa18.11■□□□□ 0.49
LINC00539-202ENST00000423575 VWDEQ8N2E2 1590 aa18.11■□□□□ 0.49
LINC00539-202ENST00000423575 KANK1Q14678 1352 aa18.09■□□□□ 0.49
LINC00539-202ENST00000423575 FER1L4A9Z1Z3 1794 aa18.09■□□□□ 0.49
LINC00539-202ENST00000423575 CNTLNQ9NXG0 1405 aa18.08■□□□□ 0.49
LINC00539-202ENST00000423575 NUP155O75694 1391 aa18.08■□□□□ 0.49
LINC00539-202ENST00000423575 WASHC2CQ9Y4E1 1318 aa18.08■□□□□ 0.49
LINC00539-202ENST00000423575 PCGF6Q9BYE7 350 aa18.08■□□□□ 0.48
LINC00539-202ENST00000423575 ESF1Q9H501 851 aaKnown RBP18.07■□□□□ 0.48
LINC00539-202ENST00000423575 CLTCQ00610 1675 aaKnown RBP18.06■□□□□ 0.48
LINC00539-202ENST00000423575 RIMS1Q86UR5 1692 aaKnown RBP18.06■□□□□ 0.48
LINC00539-202ENST00000423575 LMTK2Q8IWU2 1503 aa18.06■□□□□ 0.48
LINC00539-202ENST00000423575 ZC3H13Q5T200 1668 aaKnown RBP18.06■□□□□ 0.48
LINC00539-202ENST00000423575 IQGAP3Q86VI3 1631 aa18.05■□□□□ 0.48
LINC00539-202ENST00000423575 CEP152O94986 1710 aa18.05■□□□□ 0.48
LINC00539-202ENST00000423575 PZPP20742 1482 aa18.04■□□□□ 0.48
LINC00539-202ENST00000423575 PTPRMP28827 1452 aa18.04■□□□□ 0.48
LINC00539-202ENST00000423575 TRIM52Q96A61 297 aa18.04■□□□□ 0.48
LINC00539-202ENST00000423575 HRCP23327 699 aa18.03■□□□□ 0.48
LINC00539-202ENST00000423575 ZMYM3Q14202 1370 aa18.03■□□□□ 0.48
LINC00539-202ENST00000423575 MROH2AA6NES4 1674 aa18.03■□□□□ 0.48
LINC00539-202ENST00000423575 EFCAB6Q5THR3 1501 aa18.02■□□□□ 0.47
LINC00539-202ENST00000423575 CAMSAP1Q5T5Y3 1602 aa18.01■□□□□ 0.47
LINC00539-202ENST00000423575 TET3O43151 1660 aa18■□□□□ 0.47
LINC00539-202ENST00000423575 CEBPAP49715 358 aaPredicted RBP18■□□□□ 0.47
LINC00539-202ENST00000423575 NPATQ14207 1427 aa17.99■□□□□ 0.47
LINC00539-202ENST00000423575 ARHGAP31Q2M1Z3 1444 aa17.99■□□□□ 0.47
LINC00539-202ENST00000423575 ACIN1Q9UKV3 1341 aaKnown RBP17.98■□□□□ 0.47
LINC00539-202ENST00000423575 PLPPR3Q6T4P5 718 aa17.98■□□□□ 0.47
LINC00539-202ENST00000423575 C3P01024 1663 aa17.98■□□□□ 0.47
LINC00539-202ENST00000423575 SLC4A1APQ9BWU0 796 aaKnown RBP17.96■□□□□ 0.47
LINC00539-202ENST00000423575 FBXO31Q5XUX0 539 aaPredicted RBP17.95■□□□□ 0.46
LINC00539-202ENST00000423575 MPHOSPH9Q99550 1183 aa17.95■□□□□ 0.46
LINC00539-202ENST00000423575 ERVK-7P63135 1459 aa17.95■□□□□ 0.46
LINC00539-202ENST00000423575 RPRD2Q5VT52 1461 aaKnown RBP17.95■□□□□ 0.46
LINC00539-202ENST00000423575 E9PCH4 1651 aa17.93■□□□□ 0.46
LINC00539-202ENST00000423575 PKD2Q13563 968 aa17.93■□□□□ 0.46
LINC00539-202ENST00000423575 SPATA31D1Q6ZQQ2 1576 aa17.91■□□□□ 0.46
LINC00539-202ENST00000423575 NOS1P29475 1434 aa17.91■□□□□ 0.46
LINC00539-202ENST00000423575 TNRQ92752 1358 aa17.9■□□□□ 0.46
LINC00539-202ENST00000423575 PREX1Q8TCU6 1659 aa17.9■□□□□ 0.46
LINC00539-202ENST00000423575 FOXD1Q16676 465 aa17.89■□□□□ 0.45
LINC00539-202ENST00000423575 PTPRTO14522 1441 aa17.88■□□□□ 0.45
LINC00539-202ENST00000423575 SYNMO15061 1565 aa17.87■□□□□ 0.45
LINC00539-202ENST00000423575 PLA2R1Q13018 1463 aa17.87■□□□□ 0.45
LINC00539-202ENST00000423575 DHX57Q6P158 1386 aaKnown RBP17.86■□□□□ 0.45
LINC00539-202ENST00000423575 TRPM2O94759 1503 aa17.84■□□□□ 0.45
LINC00539-202ENST00000423575 MYO3AQ8NEV4 1616 aa17.83■□□□□ 0.45
LINC00539-202ENST00000423575 UGGT1Q9NYU2 1555 aa17.83■□□□□ 0.45
LINC00539-202ENST00000423575 SPHKAPQ2M3C7 1700 aa17.83■□□□□ 0.44
LINC00539-202ENST00000423575 CFAP65Q6ZU64 1925 aaKnown RBP17.82■□□□□ 0.44
LINC00539-202ENST00000423575 NLRP1Q9C000 1473 aa17.82■□□□□ 0.44
LINC00539-202ENST00000423575 UHRF1BP1Q6BDS2 1440 aa17.81■□□□□ 0.44
LINC00539-202ENST00000423575 ANKRD30BQ9BXX2 1392 aa17.8■□□□□ 0.44
LINC00539-202ENST00000423575 PIK3C2BO00750 1634 aa17.8■□□□□ 0.44
LINC00539-202ENST00000423575 IDI1Q13907 227 aa17.79■□□□□ 0.44
LINC00539-202ENST00000423575 SLC52A1Q9NWF4 448 aa17.79■□□□□ 0.44
LINC00539-202ENST00000423575 A2ML1A8K2U0 1454 aa17.79■□□□□ 0.44
LINC00539-202ENST00000423575 CEP170BQ9Y4F5 1589 aaPredicted RBP17.79■□□□□ 0.44
LINC00539-202ENST00000423575 LMTK3Q96Q04 1460 aa17.78■□□□□ 0.44
LINC00539-202ENST00000423575 CLTCL1P53675 1640 aa17.78■□□□□ 0.44
LINC00539-202ENST00000423575 SETD1BQ9UPS6 1966 aaKnown RBP17.78■□□□□ 0.44
LINC00539-202ENST00000423575 AEBP2Q6ZN18 517 aaPredicted RBP17.77■□□□□ 0.44
LINC00539-202ENST00000423575 ZNF142P52746 1687 aaPredicted RBP17.77■□□□□ 0.43
LINC00539-202ENST00000423575 CCDC144AA2RUR9 1427 aa17.76■□□□□ 0.43
LINC00539-202ENST00000423575 ADGRB3O60242 1522 aa17.75■□□□□ 0.43
LINC00539-202ENST00000423575 UBR1Q8IWV7 1749 aa17.7■□□□□ 0.42
LINC00539-202ENST00000423575 TMEM131LA2VDJ0 1609 aa17.7■□□□□ 0.42
LINC00539-202ENST00000423575 CHGAP10645 457 aaKnown RBP17.7■□□□□ 0.42
LINC00539-202ENST00000423575 HSPA2P54652 639 aa17.7■□□□□ 0.42
LINC00539-202ENST00000423575 STAG3Q9UJ98 1225 aa17.7■□□□□ 0.42
LINC00539-202ENST00000423575 SPATA31E1Q6ZUB1 1445 aa17.69■□□□□ 0.42
LINC00539-202ENST00000423575 KDM5AP29375 1690 aaKnown RBP17.68■□□□□ 0.42
LINC00539-202ENST00000423575 THEMISQ8N1K5 641 aaPredicted RBP17.66■□□□□ 0.42
LINC00539-202ENST00000423575 SIN3AQ96ST3 1273 aa17.66■□□□□ 0.42
LINC00539-202ENST00000423575 ARHGAP23Q9P227 1491 aa17.66■□□□□ 0.42
LINC00539-202ENST00000423575 TMEM2Q9UHN6 1383 aa17.66■□□□□ 0.42
LINC00539-202ENST00000423575 CCER1Q8TC90 406 aaPredicted RBP17.65■□□□□ 0.42
LINC00539-202ENST00000423575 SLIT1O75093 1534 aa17.65■□□□□ 0.42
LINC00539-202ENST00000423575 NEURL4Q96JN8 1562 aa17.64■□□□□ 0.41
LINC00539-202ENST00000423575 ZFYVE9O95405 1425 aa17.64■□□□□ 0.41
LINC00539-202ENST00000423575 KIF1BO60333 1816 aa17.63■□□□□ 0.41
LINC00539-202ENST00000423575 MYO5BQ9ULV0 1848 aa17.63■□□□□ 0.41
LINC00539-202ENST00000423575 RIMS2Q9UQ26 1411 aa17.63■□□□□ 0.41
LINC00539-202ENST00000423575 RGL3Q3MIN7 710 aa17.62■□□□□ 0.41
LINC00539-202ENST00000423575 ZNF326Q5BKZ1 582 aaKnown RBP17.62■□□□□ 0.41
LINC00539-202ENST00000423575 NEUROD1Q13562 356 aa17.61■□□□□ 0.41
LINC00539-202ENST00000423575 CLSPNQ9HAW4 1339 aa17.61■□□□□ 0.41
LINC00539-202ENST00000423575 SCAF11Q99590 1463 aaKnown RBP17.6■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms