RNA–Protein interactions for RNA: ENST00000419110.5

HMGB3-202, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 3

Gene HMGB3, Length 707 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-202ENST00000419110 ZNF777Q9ULD5 760 aaPredicted RBP8.86□□□□□ -0.99
HMGB3-202ENST00000419110 KDM5DQ9BY66 1539 aa8.85□□□□□ -0.99
HMGB3-202ENST00000419110 DUOX2Q9NRD8 1548 aa8.85□□□□□ -0.99
HMGB3-202ENST00000419110 DEPDC5O75140 1603 aa8.85□□□□□ -0.99
HMGB3-202ENST00000419110 SPDYE2BA6NHP3 402 aa8.85□□□□□ -0.99
HMGB3-202ENST00000419110 SPDYE6P0CI01 402 aa8.85□□□□□ -0.99
HMGB3-202ENST00000419110 SPDYE2Q495Y8 402 aa8.85□□□□□ -0.99
HMGB3-202ENST00000419110 KCNH8Q96L42 1107 aa8.85□□□□□ -0.99
HMGB3-202ENST00000419110 KIDINS220Q9ULH0 1771 aa8.85□□□□□ -0.99
HMGB3-202ENST00000419110 CD109Q6YHK3 1445 aa8.85□□□□□ -0.99
HMGB3-202ENST00000419110 IQGAP3Q86VI3 1631 aa8.84□□□□□ -0.99
HMGB3-202ENST00000419110 EFCAB2Q5VUJ9 269 aa8.84□□□□□ -0.99
HMGB3-202ENST00000419110 POGZQ7Z3K3 1410 aa8.84□□□□□ -0.99
HMGB3-202ENST00000419110 ZMYM4Q5VZL5 1548 aa8.84□□□□□ -0.99
HMGB3-202ENST00000419110 ARHGEF12Q9NZN5 1544 aa8.84□□□□□ -0.99
HMGB3-202ENST00000419110 DHX57Q6P158 1386 aaKnown RBP8.84□□□□□ -0.99
HMGB3-202ENST00000419110 ABCA6Q8N139 1617 aa8.83□□□□□ -1
HMGB3-202ENST00000419110 ZNF644Q9H582 1327 aaPredicted RBP8.83□□□□□ -1
HMGB3-202ENST00000419110 ACIN1Q9UKV3 1341 aaKnown RBP8.83□□□□□ -1
HMGB3-202ENST00000419110 BCORL1Q5H9F3 1711 aa8.83□□□□□ -1
HMGB3-202ENST00000419110 FRMPD1Q5SYB0 1578 aa8.83□□□□□ -1
HMGB3-202ENST00000419110 NCOA1Q15788 1441 aa8.83□□□□□ -1
HMGB3-202ENST00000419110 ERBINQ96RT1 1412 aa8.83□□□□□ -1
HMGB3-202ENST00000419110 MKRN4PQ13434 485 aaPredicted RBP8.83□□□□□ -1
HMGB3-202ENST00000419110 CYB5RLQ6IPT4 315 aa8.83□□□□□ -1
HMGB3-202ENST00000419110 KIF15Q9NS87 1388 aa8.83□□□□□ -1
HMGB3-202ENST00000419110 CLSPNQ9HAW4 1339 aa8.82□□□□□ -1
HMGB3-202ENST00000419110 PITPNM1O00562 1244 aa8.82□□□□□ -1
HMGB3-202ENST00000419110 RNF17Q9BXT8 1623 aaKnown RBP8.82□□□□□ -1
HMGB3-202ENST00000419110 ANKRD50Q9ULJ7 1429 aa8.81□□□□□ -1
HMGB3-202ENST00000419110 RSPH4AQ5TD94 716 aa8.81□□□□□ -1
HMGB3-202ENST00000419110 PIP4P2Q8N4L2 257 aa8.81□□□□□ -1
HMGB3-202ENST00000419110 MAGI2Q86UL8 1455 aa8.81□□□□□ -1
HMGB3-202ENST00000419110 RTEL1-TNFRSF6BF6WH68 1400 aa8.8□□□□□ -1
HMGB3-202ENST00000419110 TRAPPC8Q9Y2L5 1435 aa8.8□□□□□ -1
HMGB3-202ENST00000419110 ARHGEF40Q8TER5 1519 aa8.8□□□□□ -1
HMGB3-202ENST00000419110 DIP2CQ9Y2E4 1556 aa8.8□□□□□ -1
HMGB3-202ENST00000419110 ZC3H13Q5T200 1668 aaKnown RBP8.8□□□□□ -1
HMGB3-202ENST00000419110 PRDM15P57071 1507 aaPredicted RBP8.8□□□□□ -1
HMGB3-202ENST00000419110 SCAPERQ9BY12 1400 aa8.8□□□□□ -1
HMGB3-202ENST00000419110 TET3O43151 1660 aa8.79□□□□□ -1
HMGB3-202ENST00000419110 DENND4BO75064 1496 aaPredicted RBP8.79□□□□□ -1
HMGB3-202ENST00000419110 TSPY4P0CV99 314 aa8.79□□□□□ -1
HMGB3-202ENST00000419110 TSPY10P0CW01 314 aa8.79□□□□□ -1
HMGB3-202ENST00000419110 CHIC2Q9UKJ5 165 aa8.79□□□□□ -1
HMGB3-202ENST00000419110 CEP152O94986 1710 aa8.79□□□□□ -1
HMGB3-202ENST00000419110 RRP7BPQ9NSQ0 103 aa8.78□□□□□ -1
HMGB3-202ENST00000419110 SPHKAPQ2M3C7 1700 aa8.77□□□□□ -1
HMGB3-202ENST00000419110 FAM135AQ9P2D6 1515 aa8.77□□□□□ -1.01
HMGB3-202ENST00000419110 FXR2P51116 673 aaKnown RBP eCLIP8.77□□□□□ -1.01
HMGB3-202ENST00000419110 PZPP20742 1482 aa8.77□□□□□ -1.01
HMGB3-202ENST00000419110 MLH3Q9UHC1 1453 aa8.77□□□□□ -1.01
HMGB3-202ENST00000419110 HNRNPMP52272 730 aaKnown RBP eCLIP8.76□□□□□ -1.01
HMGB3-202ENST00000419110 ZNF692Q9BU19 519 aaPredicted RBP8.76□□□□□ -1.01
HMGB3-202ENST00000419110 REREQ9P2R6 1566 aa8.76□□□□□ -1.01
HMGB3-202ENST00000419110 SPAG9O60271 1321 aaKnown RBP8.76□□□□□ -1.01
HMGB3-202ENST00000419110 MROH1Q8NDA8 1641 aa8.76□□□□□ -1.01
HMGB3-202ENST00000419110 CAMSAP1Q5T5Y3 1602 aa8.74□□□□□ -1.01
HMGB3-202ENST00000419110 E9PCH4 1651 aa8.74□□□□□ -1.01
HMGB3-202ENST00000419110 A2MP01023 1474 aa8.73□□□□□ -1.01
HMGB3-202ENST00000419110 EFCAB6Q5THR3 1501 aa8.73□□□□□ -1.01
HMGB3-202ENST00000419110 VWDEQ8N2E2 1590 aa8.73□□□□□ -1.01
HMGB3-202ENST00000419110 FAM69CQ0P6D2 419 aa8.72□□□□□ -1.01
HMGB3-202ENST00000419110 SSUH2Q9Y2M2 353 aa8.72□□□□□ -1.01
HMGB3-202ENST00000419110 TRIM52Q96A61 297 aa8.71□□□□□ -1.02
HMGB3-202ENST00000419110 SPDYE1Q8NFV5 336 aaPredicted RBP8.7□□□□□ -1.02
HMGB3-202ENST00000419110 CLEC11AQ9Y240 323 aa8.7□□□□□ -1.02
HMGB3-202ENST00000419110 KIF1BO60333 1816 aa8.7□□□□□ -1.02
HMGB3-202ENST00000419110 TRPM2O94759 1503 aa8.7□□□□□ -1.02
HMGB3-202ENST00000419110 MYT1LQ9UL68 1186 aa8.69□□□□□ -1.02
HMGB3-202ENST00000419110 NUP155O75694 1391 aa8.69□□□□□ -1.02
HMGB3-202ENST00000419110 KANK1Q14678 1352 aa8.69□□□□□ -1.02
HMGB3-202ENST00000419110 LMTK2Q8IWU2 1503 aa8.69□□□□□ -1.02
HMGB3-202ENST00000419110 SP7Q8TDD2 431 aaPredicted RBP8.68□□□□□ -1.02
HMGB3-202ENST00000419110 TONSLQ96HA7 1378 aa8.68□□□□□ -1.02
HMGB3-202ENST00000419110 RPRD2Q5VT52 1461 aaKnown RBP8.68□□□□□ -1.02
HMGB3-202ENST00000419110 HAX1O00165 279 aa8.67□□□□□ -1.02
HMGB3-202ENST00000419110 ABCC3O15438 1527 aa8.67□□□□□ -1.02
HMGB3-202ENST00000419110 AGLP35573 1532 aa8.67□□□□□ -1.02
HMGB3-202ENST00000419110 DHX29Q7Z478 1369 aaKnown RBP8.67□□□□□ -1.02
HMGB3-202ENST00000419110 SIGLEC1Q9BZZ2 1709 aa8.66□□□□□ -1.02
HMGB3-202ENST00000419110 CLTCQ00610 1675 aaKnown RBP8.66□□□□□ -1.02
HMGB3-202ENST00000419110 PREX1Q8TCU6 1659 aa8.66□□□□□ -1.02
HMGB3-202ENST00000419110 CLTCL1P53675 1640 aa8.66□□□□□ -1.02
HMGB3-202ENST00000419110 AFAP1Q8N556 730 aa8.66□□□□□ -1.02
HMGB3-202ENST00000419110 FER1L4A9Z1Z3 1794 aa8.66□□□□□ -1.02
HMGB3-202ENST00000419110 MROH2AA6NES4 1674 aa8.65□□□□□ -1.02
HMGB3-202ENST00000419110 YEATS2Q9ULM3 1422 aa8.65□□□□□ -1.02
HMGB3-202ENST00000419110 MPHOSPH9Q99550 1183 aa8.65□□□□□ -1.02
HMGB3-202ENST00000419110 POLR1AO95602 1720 aaPredicted RBP8.65□□□□□ -1.03
HMGB3-202ENST00000419110 IFT172Q9UG01 1749 aa8.65□□□□□ -1.03
HMGB3-202ENST00000419110 ATP10AO60312 1499 aa8.64□□□□□ -1.03
HMGB3-202ENST00000419110 NEURL4Q96JN8 1562 aa8.64□□□□□ -1.03
HMGB3-202ENST00000419110 CCDC144AA2RUR9 1427 aa8.63□□□□□ -1.03
HMGB3-202ENST00000419110 ANKRD30BQ9BXX2 1392 aa8.63□□□□□ -1.03
HMGB3-202ENST00000419110 CFAP65Q6ZU64 1925 aaKnown RBP8.63□□□□□ -1.03
HMGB3-202ENST00000419110 PRKAR2AP13861 404 aaKnown RBP8.62□□□□□ -1.03
HMGB3-202ENST00000419110 DNAJC5Q9H3Z4 198 aa8.62□□□□□ -1.03
HMGB3-202ENST00000419110 PIK3C2BO00750 1634 aa8.62□□□□□ -1.03
HMGB3-202ENST00000419110 RAPGEF3O95398 923 aa8.61□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 9.3 ms