RNA–Protein interactions for RNA: ENST00000417137.5

SMARCB1-205, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 3

Gene SMARCB1, Length 889 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-205ENST00000417137 FER1L4A9Z1Z3 1794 aa35.01■■■■□ 3.2
SMARCB1-205ENST00000417137 RIMS1Q86UR5 1692 aaKnown RBP35.01■■■■□ 3.19
SMARCB1-205ENST00000417137 PLPPR3Q6T4P5 718 aa34.97■■■■□ 3.19
SMARCB1-205ENST00000417137 EIF2AK4Q9P2K8 1649 aaKnown RBP34.95■■■■□ 3.19
SMARCB1-205ENST00000417137 WASHC2CQ9Y4E1 1318 aa34.94■■■■□ 3.18
SMARCB1-205ENST00000417137 ANKRD50Q9ULJ7 1429 aa34.91■■■■□ 3.18
SMARCB1-205ENST00000417137 CEBPAP49715 358 aaPredicted RBP34.91■■■■□ 3.18
SMARCB1-205ENST00000417137 ZMYM3Q14202 1370 aa34.9■■■■□ 3.18
SMARCB1-205ENST00000417137 FAM135AQ9P2D6 1515 aa34.88■■■■□ 3.17
SMARCB1-205ENST00000417137 RNF17Q9BXT8 1623 aaKnown RBP34.86■■■■□ 3.17
SMARCB1-205ENST00000417137 GRWD1Q9BQ67 446 aaKnown RBP eCLIP34.85■■■■□ 3.174e-8■□□□□ 8.4
SMARCB1-205ENST00000417137 KANK1Q14678 1352 aa34.84■■■■□ 3.17
SMARCB1-205ENST00000417137 KDM5DQ9BY66 1539 aa34.83■■■■□ 3.17
SMARCB1-205ENST00000417137 MROH2AA6NES4 1674 aa34.8■■■■□ 3.16
SMARCB1-205ENST00000417137 CLTCQ00610 1675 aaKnown RBP34.8■■■■□ 3.16
SMARCB1-205ENST00000417137 FBXO41Q8TF61 875 aa34.78■■■■□ 3.16
SMARCB1-205ENST00000417137 MROH1Q8NDA8 1641 aa34.74■■■■□ 3.15
SMARCB1-205ENST00000417137 C3P01024 1663 aa34.74■■■■□ 3.15
SMARCB1-205ENST00000417137 PRDM15P57071 1507 aaPredicted RBP34.74■■■■□ 3.15
SMARCB1-205ENST00000417137 ABCC3O15438 1527 aa34.72■■■■□ 3.15
SMARCB1-205ENST00000417137 NPATQ14207 1427 aa34.72■■■■□ 3.15
SMARCB1-205ENST00000417137 DEPDC5O75140 1603 aa34.71■■■■□ 3.15
SMARCB1-205ENST00000417137 NAIPQ13075 1403 aa34.7■■■■□ 3.15
SMARCB1-205ENST00000417137 ZC3H13Q5T200 1668 aaKnown RBP34.7■■■■□ 3.14
SMARCB1-205ENST00000417137 HFM1A2PYH4 1435 aa34.69■■■■□ 3.14
SMARCB1-205ENST00000417137 LMTK3Q96Q04 1460 aa34.68■■■■□ 3.14
SMARCB1-205ENST00000417137 PZPP20742 1482 aa34.65■■■■□ 3.14
SMARCB1-205ENST00000417137 FBXO31Q5XUX0 539 aaPredicted RBP34.63■■■■□ 3.13
SMARCB1-205ENST00000417137 SETD1BQ9UPS6 1966 aaKnown RBP34.62■■■■□ 3.13
SMARCB1-205ENST00000417137 VWDEQ8N2E2 1590 aa34.62■■■■□ 3.13
SMARCB1-205ENST00000417137 UHRF1BP1Q6BDS2 1440 aa34.61■■■■□ 3.13
SMARCB1-205ENST00000417137 NUP155O75694 1391 aa34.61■■■■□ 3.13
SMARCB1-205ENST00000417137 LMTK2Q8IWU2 1503 aa34.6■■■■□ 3.13
SMARCB1-205ENST00000417137 ARHGAP31Q2M1Z3 1444 aa34.6■■■■□ 3.13
SMARCB1-205ENST00000417137 CEP152O94986 1710 aa34.58■■■■□ 3.13
SMARCB1-205ENST00000417137 UNC13BO14795 1591 aa34.57■■■■□ 3.13
SMARCB1-205ENST00000417137 GCC2Q8IWJ2 1684 aa34.57■■■■□ 3.12
SMARCB1-205ENST00000417137 TNRQ92752 1358 aa34.56■■■■□ 3.12
SMARCB1-205ENST00000417137 CAMSAP1Q5T5Y3 1602 aa34.55■■■■□ 3.12
SMARCB1-205ENST00000417137 PREX1Q8TCU6 1659 aa34.54■■■■□ 3.12
SMARCB1-205ENST00000417137 ACIN1Q9UKV3 1341 aaKnown RBP34.52■■■■□ 3.12
SMARCB1-205ENST00000417137 TRIM52Q96A61 297 aa34.51■■■■□ 3.12
SMARCB1-205ENST00000417137 SETD5Q9C0A6 1442 aa34.47■■■■□ 3.11
SMARCB1-205ENST00000417137 ERVK-7P63135 1459 aa34.47■■■■□ 3.11
SMARCB1-205ENST00000417137 HSPA2P54652 639 aa34.47■■■■□ 3.11
SMARCB1-205ENST00000417137 EFCAB6Q5THR3 1501 aa34.45■■■■□ 3.11
SMARCB1-205ENST00000417137 SPATA31D1Q6ZQQ2 1576 aa34.45■■■■□ 3.1
SMARCB1-205ENST00000417137 IQGAP3Q86VI3 1631 aa34.44■■■■□ 3.1
SMARCB1-205ENST00000417137 RPRD2Q5VT52 1461 aaKnown RBP34.44■■■■□ 3.1
SMARCB1-205ENST00000417137 TET3O43151 1660 aa34.42■■■■□ 3.1
SMARCB1-205ENST00000417137 NLRP1Q9C000 1473 aa34.41■■■■□ 3.1
SMARCB1-205ENST00000417137 A2ML1A8K2U0 1454 aa34.39■■■■□ 3.1
SMARCB1-205ENST00000417137 MYO3AQ8NEV4 1616 aa34.38■■■■□ 3.09
SMARCB1-205ENST00000417137 SLC4A1APQ9BWU0 796 aaKnown RBP34.35■■■■□ 3.09
SMARCB1-205ENST00000417137 CEP170BQ9Y4F5 1589 aaPredicted RBP34.35■■■■□ 3.09
SMARCB1-205ENST00000417137 NOS1P29475 1434 aa34.34■■■■□ 3.09
SMARCB1-205ENST00000417137 THEMISQ8N1K5 641 aaPredicted RBP34.34■■■■□ 3.09
SMARCB1-205ENST00000417137 SLC52A1Q9NWF4 448 aa34.34■■■■□ 3.09
SMARCB1-205ENST00000417137 CFAP65Q6ZU64 1925 aaKnown RBP34.34■■■■□ 3.09
SMARCB1-205ENST00000417137 RAB3GAP2Q9H2M9 1393 aa34.32■■■■□ 3.08
SMARCB1-205ENST00000417137 HRCP23327 699 aa34.31■■■■□ 3.08
SMARCB1-205ENST00000417137 ZNF142P52746 1687 aaPredicted RBP34.3■■■■□ 3.08
SMARCB1-205ENST00000417137 TRIM26Q12899 539 aaPredicted RBP34.29■■■■□ 3.08
SMARCB1-205ENST00000417137 PKD2Q13563 968 aa34.28■■■■□ 3.08
SMARCB1-205ENST00000417137 IDI1Q13907 227 aa34.28■■■■□ 3.08
SMARCB1-205ENST00000417137 STAG3Q9UJ98 1225 aa34.27■■■■□ 3.08
SMARCB1-205ENST00000417137 E9PCH4 1651 aa34.26■■■■□ 3.08
SMARCB1-205ENST00000417137 UGGT1Q9NYU2 1555 aa34.26■■■■□ 3.07
SMARCB1-205ENST00000417137 CERKQ8TCT0 537 aa34.24■■■■□ 3.07
SMARCB1-205ENST00000417137 MPHOSPH9Q99550 1183 aa34.24■■■■□ 3.07
SMARCB1-205ENST00000417137 DMRT2Q9Y5R5 561 aa34.24■■■■□ 3.07
SMARCB1-205ENST00000417137 SYNMO15061 1565 aa34.21■■■■□ 3.07
SMARCB1-205ENST00000417137 PLA2R1Q13018 1463 aa34.2■■■■□ 3.07
SMARCB1-205ENST00000417137 PTPRTO14522 1441 aa34.17■■■■□ 3.06
SMARCB1-205ENST00000417137 ANKLE2Q86XL3 938 aa34.17■■■■□ 3.06
SMARCB1-205ENST00000417137 NCKAP5LQ9HCH0 1330 aa34.14■■■■□ 3.06
SMARCB1-205ENST00000417137 CHGAP10645 457 aaKnown RBP34.11■■■■□ 3.05
SMARCB1-205ENST00000417137 PIK3C2BO00750 1634 aa34.11■■■■□ 3.05
SMARCB1-205ENST00000417137 UBR1Q8IWV7 1749 aa34.08■■■■□ 3.05
SMARCB1-205ENST00000417137 FOXD1Q16676 465 aa34.08■■■■□ 3.05
SMARCB1-205ENST00000417137 EID1Q9Y6B2 187 aa34.08■■■■□ 3.05
SMARCB1-205ENST00000417137 STRCQ7RTU9 1775 aa34.07■■■■□ 3.04
SMARCB1-205ENST00000417137 KDM5AP29375 1690 aaKnown RBP34.06■■■■□ 3.04
SMARCB1-205ENST00000417137 SPHKAPQ2M3C7 1700 aa34.05■■■■□ 3.04
SMARCB1-205ENST00000417137 HDGFP51858 240 aaKnown RBP34.05■■■■□ 3.04
SMARCB1-205ENST00000417137 TMEM2Q9UHN6 1383 aa34.05■■■■□ 3.04
SMARCB1-205ENST00000417137 ADGRB3O60242 1522 aa34.04■■■■□ 3.04
SMARCB1-205ENST00000417137 TXNDC2Q86VQ3 553 aa34.04■■■■□ 3.04
SMARCB1-205ENST00000417137 TRPM2O94759 1503 aa34.03■■■■□ 3.04
SMARCB1-205ENST00000417137 SLIT1O75093 1534 aa34.01■■■■□ 3.04
SMARCB1-205ENST00000417137 ARHGAP23Q9P227 1491 aa34.01■■■■□ 3.03
SMARCB1-205ENST00000417137 LTKP29376 864 aa33.97■■■■□ 3.03
SMARCB1-205ENST00000417137 TMEM131LA2VDJ0 1609 aa33.96■■■■□ 3.03
SMARCB1-205ENST00000417137 SCAF11Q99590 1463 aaKnown RBP33.95■■■■□ 3.03
SMARCB1-205ENST00000417137 ABCF1Q8NE71 845 aaKnown RBP eCLIP33.95■■■■□ 3.03
SMARCB1-205ENST00000417137 MED14O60244 1454 aa33.94■■■■□ 3.02
SMARCB1-205ENST00000417137 ZNF326Q5BKZ1 582 aaKnown RBP33.93■■■■□ 3.02
SMARCB1-205ENST00000417137 CCDC144AA2RUR9 1427 aa33.93■■■■□ 3.02
SMARCB1-205ENST00000417137 NPHP4O75161 1426 aaPredicted RBP33.93■■■■□ 3.02
SMARCB1-205ENST00000417137 CLTCL1P53675 1640 aa33.9■■■■□ 3.02
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms