RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 KIF3BO15066 747 aa21.59■■□□□ 1.05
USP4-203ENST00000415188 MYOM3Q5VTT5 1437 aa21.59■■□□□ 1.05
USP4-203ENST00000415188 RAB3GAP2Q9H2M9 1393 aa21.59■■□□□ 1.05
USP4-203ENST00000415188 TSPY4P0CV99 314 aa21.58■■□□□ 1.05
USP4-203ENST00000415188 TSPY10P0CW01 314 aa21.58■■□□□ 1.05
USP4-203ENST00000415188 PPP6R1Q9UPN7 881 aa21.58■■□□□ 1.05
USP4-203ENST00000415188 CERKQ8TCT0 537 aa21.57■■□□□ 1.04
USP4-203ENST00000415188 DMRT2Q9Y5R5 561 aa21.57■■□□□ 1.04
USP4-203ENST00000415188 NCOA1Q15788 1441 aa21.55■■□□□ 1.04
USP4-203ENST00000415188 MIA2Q96PC5 1412 aa21.55■■□□□ 1.04
USP4-203ENST00000415188 FGD6Q6ZV73 1430 aa21.54■■□□□ 1.04
USP4-203ENST00000415188 MYO3AQ8NEV4 1616 aa21.53■■□□□ 1.04
USP4-203ENST00000415188 CAMSAP1Q5T5Y3 1602 aa21.52■■□□□ 1.04
USP4-203ENST00000415188 PTPRTO14522 1441 aa21.52■■□□□ 1.03
USP4-203ENST00000415188 MAST1Q9Y2H9 1570 aa21.51■■□□□ 1.03
USP4-203ENST00000415188 KDM5DQ9BY66 1539 aa21.5■■□□□ 1.03
USP4-203ENST00000415188 CEP170BQ9Y4F5 1589 aaPredicted RBP21.49■■□□□ 1.03
USP4-203ENST00000415188 ITGAEP38570 1179 aa21.49■■□□□ 1.03
USP4-203ENST00000415188 FAM50AQ14320 339 aaKnown RBP21.49■■□□□ 1.03
USP4-203ENST00000415188 FBXO31Q5XUX0 539 aaPredicted RBP21.49■■□□□ 1.03
USP4-203ENST00000415188 NCKAP5LQ9HCH0 1330 aa21.49■■□□□ 1.03
USP4-203ENST00000415188 WASHC2CQ9Y4E1 1318 aa21.49■■□□□ 1.03
USP4-203ENST00000415188 ZNF142P52746 1687 aaPredicted RBP21.48■■□□□ 1.03
USP4-203ENST00000415188 CENPBP07199 599 aaPredicted RBP21.47■■□□□ 1.03
USP4-203ENST00000415188 PZPP20742 1482 aa21.45■■□□□ 1.02
USP4-203ENST00000415188 FAM135AQ9P2D6 1515 aa21.45■■□□□ 1.02
USP4-203ENST00000415188 PTPN23Q9H3S7 1636 aa21.45■■□□□ 1.02
USP4-203ENST00000415188 TNRQ92752 1358 aa21.44■■□□□ 1.02
USP4-203ENST00000415188 ABCC5O15440 1437 aa21.43■■□□□ 1.02
USP4-203ENST00000415188 A2ML1A8K2U0 1454 aa21.43■■□□□ 1.02
USP4-203ENST00000415188 RNF17Q9BXT8 1623 aaKnown RBP21.43■■□□□ 1.02
USP4-203ENST00000415188 PLA2R1Q13018 1463 aa21.42■■□□□ 1.02
USP4-203ENST00000415188 ACIN1Q9UKV3 1341 aaKnown RBP21.42■■□□□ 1.02
USP4-203ENST00000415188 TCOF1Q13428 1488 aaKnown RBP21.4■■□□□ 1.02
USP4-203ENST00000415188 DNMT1P26358 1616 aaKnown RBP21.4■■□□□ 1.02
USP4-203ENST00000415188 ABCC3O15438 1527 aa21.39■■□□□ 1.02
USP4-203ENST00000415188 LTBP4Q8N2S1 1624 aa21.39■■□□□ 1.01
USP4-203ENST00000415188 EIF2AK4Q9P2K8 1649 aaKnown RBP21.39■■□□□ 1.01
USP4-203ENST00000415188 PKD2Q13563 968 aa21.39■■□□□ 1.01
USP4-203ENST00000415188 TIMELESSQ9UNS1 1208 aa21.39■■□□□ 1.01
USP4-203ENST00000415188 KIF15Q9NS87 1388 aa21.39■■□□□ 1.01
USP4-203ENST00000415188 SHANK2Q9UPX8 1470 aa21.38■■□□□ 1.01
USP4-203ENST00000415188 DUOX2Q9NRD8 1548 aa21.38■■□□□ 1.01
USP4-203ENST00000415188 MROH1Q8NDA8 1641 aa21.38■■□□□ 1.01
USP4-203ENST00000415188 CROCC2H7BZ55 1655 aa21.38■■□□□ 1.01
USP4-203ENST00000415188 HFM1A2PYH4 1435 aa21.38■■□□□ 1.01
USP4-203ENST00000415188 DAPK1P53355 1430 aa21.38■■□□□ 1.01
USP4-203ENST00000415188 RRP7BPQ9NSQ0 103 aa21.38■■□□□ 1.01
USP4-203ENST00000415188 ZNF335Q9H4Z2 1342 aaPredicted RBP21.34■■□□□ 1.01
USP4-203ENST00000415188 SCAF1Q9H7N4 1312 aaKnown RBP21.34■■□□□ 1.01
USP4-203ENST00000415188 CHIC2Q9UKJ5 165 aa21.33■■□□□ 1.01
USP4-203ENST00000415188 ZC3H13Q5T200 1668 aaKnown RBP21.33■■□□□ 1.01
USP4-203ENST00000415188 CEP152O94986 1710 aa21.31■■□□□ 1
USP4-203ENST00000415188 NLRP1Q9C000 1473 aa21.31■■□□□ 1
USP4-203ENST00000415188 ERBINQ96RT1 1412 aa21.31■■□□□ 1
USP4-203ENST00000415188 ERVK-7P63135 1459 aa21.3■■□□□ 1
USP4-203ENST00000415188 SPATA31D1Q6ZQQ2 1576 aa21.29■■□□□ 1
USP4-203ENST00000415188 GCC2Q8IWJ2 1684 aa21.29■■□□□ 1
USP4-203ENST00000415188 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.28■■□□□ 17e-6■□□□□ 10.8
USP4-203ENST00000415188 NEURL4Q96JN8 1562 aa21.28■■□□□ 1
USP4-203ENST00000415188 UGGT1Q9NYU2 1555 aa21.28■■□□□ 1
USP4-203ENST00000415188 PRDM15P57071 1507 aaPredicted RBP21.28■■□□□ 1
USP4-203ENST00000415188 MIER1Q8N108 512 aa21.27■■□□□ 1
USP4-203ENST00000415188 THEMISQ8N1K5 641 aaPredicted RBP21.27■■□□□ 1
USP4-203ENST00000415188 ANKRD30AQ9BXX3 1397 aa21.27■■□□□ 1
USP4-203ENST00000415188 NEUROD1Q13562 356 aa21.26■□□□□ 0.99
USP4-203ENST00000415188 POLR1AO95602 1720 aaPredicted RBP21.26■□□□□ 0.99
USP4-203ENST00000415188 ANKLE2Q86XL3 938 aa21.25■□□□□ 0.99
USP4-203ENST00000415188 NAIPQ13075 1403 aa21.25■□□□□ 0.99
USP4-203ENST00000415188 IQSEC2Q5JU85 1478 aa21.24■□□□□ 0.99
USP4-203ENST00000415188 CFAP65Q6ZU64 1925 aaKnown RBP21.24■□□□□ 0.99
USP4-203ENST00000415188 DEPDC5O75140 1603 aa21.23■□□□□ 0.99
USP4-203ENST00000415188 ARHGAP31Q2M1Z3 1444 aa21.21■□□□□ 0.99
USP4-203ENST00000415188 ADGRL2O95490 1459 aa21.21■□□□□ 0.99
USP4-203ENST00000415188 KANK1Q14678 1352 aa21.19■□□□□ 0.98
USP4-203ENST00000415188 NPHP4O75161 1426 aaPredicted RBP21.18■□□□□ 0.98
USP4-203ENST00000415188 MED14O60244 1454 aa21.17■□□□□ 0.98
USP4-203ENST00000415188 VWDEQ8N2E2 1590 aa21.16■□□□□ 0.98
USP4-203ENST00000415188 UBR1Q8IWV7 1749 aa21.15■□□□□ 0.98
USP4-203ENST00000415188 UBAP1LF5GYI3 381 aa21.15■□□□□ 0.98
USP4-203ENST00000415188 LMTK2Q8IWU2 1503 aa21.15■□□□□ 0.98
USP4-203ENST00000415188 ANKRD50Q9ULJ7 1429 aa21.13■□□□□ 0.97
USP4-203ENST00000415188 IQGAP1P46940 1657 aa21.13■□□□□ 0.97
USP4-203ENST00000415188 SIN3AQ96ST3 1273 aa21.11■□□□□ 0.97
USP4-203ENST00000415188 ROCK1Q13464 1354 aa21.1■□□□□ 0.97
USP4-203ENST00000415188 CPS1P31327 1500 aa21.1■□□□□ 0.97
USP4-203ENST00000415188 LTKP29376 864 aa21.1■□□□□ 0.97
USP4-203ENST00000415188 PIK3C2BO00750 1634 aa21.09■□□□□ 0.97
USP4-203ENST00000415188 EFCAB6Q5THR3 1501 aa21.09■□□□□ 0.97
USP4-203ENST00000415188 SCAF11Q99590 1463 aaKnown RBP21.09■□□□□ 0.97
USP4-203ENST00000415188 ARHGAP23Q9P227 1491 aa21.09■□□□□ 0.97
USP4-203ENST00000415188 PPP1R15AO75807 674 aaPredicted RBP21.08■□□□□ 0.97
USP4-203ENST00000415188 IDI1Q13907 227 aa21.07■□□□□ 0.96
USP4-203ENST00000415188 TXNDC2Q86VQ3 553 aa21.07■□□□□ 0.96
USP4-203ENST00000415188 SLIT1O75093 1534 aa21.07■□□□□ 0.96
USP4-203ENST00000415188 TONSLQ96HA7 1378 aa21.07■□□□□ 0.96
USP4-203ENST00000415188 SYNMO15061 1565 aa21.07■□□□□ 0.96
USP4-203ENST00000415188 NOS1P29475 1434 aa21.06■□□□□ 0.96
USP4-203ENST00000415188 STAG3Q9UJ98 1225 aa21.06■□□□□ 0.96
USP4-203ENST00000415188 TMEM2Q9UHN6 1383 aa21.04■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms