RNA–Protein interactions for RNA: ENST00000414963.2

SF3B1-204, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SF3B1, Length 651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-204ENST00000414963 UNC13BO14795 1591 aa21.07■□□□□ 0.96
SF3B1-204ENST00000414963 KDM5DQ9BY66 1539 aa21.07■□□□□ 0.96
SF3B1-204ENST00000414963 DEPDC5O75140 1603 aa21.05■□□□□ 0.96
SF3B1-204ENST00000414963 NUP155O75694 1391 aa21.05■□□□□ 0.96
SF3B1-204ENST00000414963 PZPP20742 1482 aa21.03■□□□□ 0.96
SF3B1-204ENST00000414963 MPHOSPH9Q99550 1183 aa21.03■□□□□ 0.96
SF3B1-204ENST00000414963 RNF17Q9BXT8 1623 aaKnown RBP21.03■□□□□ 0.96
SF3B1-204ENST00000414963 PRDM15P57071 1507 aaPredicted RBP21■□□□□ 0.95
SF3B1-204ENST00000414963 CCER1Q8TC90 406 aaPredicted RBP21■□□□□ 0.95
SF3B1-204ENST00000414963 VWDEQ8N2E2 1590 aa21■□□□□ 0.95
SF3B1-204ENST00000414963 CLSPNQ9HAW4 1339 aa21■□□□□ 0.95
SF3B1-204ENST00000414963 MROH1Q8NDA8 1641 aa21■□□□□ 0.95
SF3B1-204ENST00000414963 KANK1Q14678 1352 aa20.99■□□□□ 0.95
SF3B1-204ENST00000414963 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.99■□□□□ 0.959e-22■■□□□ 14.5
SF3B1-204ENST00000414963 SLC4A1APQ9BWU0 796 aaKnown RBP20.99■□□□□ 0.95
SF3B1-204ENST00000414963 PPP6R1Q9UPN7 881 aa20.99■□□□□ 0.95
SF3B1-204ENST00000414963 IQGAP3Q86VI3 1631 aa20.98■□□□□ 0.95
SF3B1-204ENST00000414963 FAM135AQ9P2D6 1515 aa20.98■□□□□ 0.95
SF3B1-204ENST00000414963 GGT6Q6P531 493 aa20.96■□□□□ 0.95
SF3B1-204ENST00000414963 SIGLEC1Q9BZZ2 1709 aa20.95■□□□□ 0.94
SF3B1-204ENST00000414963 LMTK2Q8IWU2 1503 aa20.94■□□□□ 0.94
SF3B1-204ENST00000414963 PKD2Q13563 968 aa20.92■□□□□ 0.94
SF3B1-204ENST00000414963 WASHC2CQ9Y4E1 1318 aa20.9■□□□□ 0.94
SF3B1-204ENST00000414963 ARID4BQ4LE39 1312 aaPredicted RBP20.89■□□□□ 0.93
SF3B1-204ENST00000414963 ABCC3O15438 1527 aa20.88■□□□□ 0.93
SF3B1-204ENST00000414963 ANKRD30BQ9BXX2 1392 aa20.87■□□□□ 0.93
SF3B1-204ENST00000414963 TET3O43151 1660 aa20.87■□□□□ 0.93
SF3B1-204ENST00000414963 FOXD1Q16676 465 aa20.85■□□□□ 0.93
SF3B1-204ENST00000414963 ZC3H13Q5T200 1668 aaKnown RBP20.85■□□□□ 0.93
SF3B1-204ENST00000414963 ARHGAP31Q2M1Z3 1444 aa20.85■□□□□ 0.93
SF3B1-204ENST00000414963 EFCAB6Q5THR3 1501 aa20.83■□□□□ 0.93
SF3B1-204ENST00000414963 MLECQ14165 292 aa20.83■□□□□ 0.93
SF3B1-204ENST00000414963 RPRD2Q5VT52 1461 aaKnown RBP20.82■□□□□ 0.92
SF3B1-204ENST00000414963 PTPRTO14522 1441 aa20.8■□□□□ 0.92
SF3B1-204ENST00000414963 CNTLNQ9NXG0 1405 aa20.8■□□□□ 0.92
SF3B1-204ENST00000414963 CEP152O94986 1710 aa20.8■□□□□ 0.92
SF3B1-204ENST00000414963 PLA2R1Q13018 1463 aa20.8■□□□□ 0.92
SF3B1-204ENST00000414963 E9PCH4 1651 aa20.8■□□□□ 0.92
SF3B1-204ENST00000414963 NPATQ14207 1427 aa20.79■□□□□ 0.92
SF3B1-204ENST00000414963 CAMSAP1Q5T5Y3 1602 aa20.78■□□□□ 0.92
SF3B1-204ENST00000414963 ESF1Q9H501 851 aaKnown RBP20.77■□□□□ 0.92
SF3B1-204ENST00000414963 ZEB1P37275 1124 aaPredicted RBP20.76■□□□□ 0.91
SF3B1-204ENST00000414963 SIN3AQ96ST3 1273 aa20.76■□□□□ 0.91
SF3B1-204ENST00000414963 ZMYM3Q14202 1370 aa20.74■□□□□ 0.91
SF3B1-204ENST00000414963 NOS1P29475 1434 aa20.74■□□□□ 0.91
SF3B1-204ENST00000414963 TIMELESSQ9UNS1 1208 aa20.74■□□□□ 0.91
SF3B1-204ENST00000414963 CLTCQ00610 1675 aaKnown RBP20.73■□□□□ 0.91
SF3B1-204ENST00000414963 TRPM2O94759 1503 aa20.73■□□□□ 0.91
SF3B1-204ENST00000414963 MROH2AA6NES4 1674 aa20.71■□□□□ 0.91
SF3B1-204ENST00000414963 NEUROD1Q13562 356 aa20.7■□□□□ 0.9
SF3B1-204ENST00000414963 ADAMTSL3P82987 1691 aa20.7■□□□□ 0.9
SF3B1-204ENST00000414963 CCDC144AA2RUR9 1427 aa20.7■□□□□ 0.9
SF3B1-204ENST00000414963 SPHKAPQ2M3C7 1700 aa20.69■□□□□ 0.9
SF3B1-204ENST00000414963 ERVK-7P63135 1459 aa20.67■□□□□ 0.9
SF3B1-204ENST00000414963 FBXO31Q5XUX0 539 aaPredicted RBP20.66■□□□□ 0.9
SF3B1-204ENST00000414963 FER1L4A9Z1Z3 1794 aa20.65■□□□□ 0.9
SF3B1-204ENST00000414963 SPATA31D1Q6ZQQ2 1576 aa20.65■□□□□ 0.9
SF3B1-204ENST00000414963 SLC52A1Q9NWF4 448 aa20.65■□□□□ 0.9
SF3B1-204ENST00000414963 PREX1Q8TCU6 1659 aa20.64■□□□□ 0.89
SF3B1-204ENST00000414963 MADDQ8WXG6 1647 aa20.63■□□□□ 0.89
SF3B1-204ENST00000414963 SYNMO15061 1565 aa20.63■□□□□ 0.89
SF3B1-204ENST00000414963 CLTCL1P53675 1640 aa20.61■□□□□ 0.89
SF3B1-204ENST00000414963 TONSLQ96HA7 1378 aa20.6■□□□□ 0.89
SF3B1-204ENST00000414963 NEURL4Q96JN8 1562 aa20.6■□□□□ 0.89
SF3B1-204ENST00000414963 SPATA31E1Q6ZUB1 1445 aa20.6■□□□□ 0.89
SF3B1-204ENST00000414963 PIK3C2BO00750 1634 aa20.6■□□□□ 0.89
SF3B1-204ENST00000414963 C3P01024 1663 aa20.58■□□□□ 0.89
SF3B1-204ENST00000414963 CEBPAP49715 358 aaPredicted RBP20.58■□□□□ 0.89
SF3B1-204ENST00000414963 IDI1Q13907 227 aa20.58■□□□□ 0.89
SF3B1-204ENST00000414963 UGGT1Q9NYU2 1555 aa20.58■□□□□ 0.88
SF3B1-204ENST00000414963 TNRQ92752 1358 aa20.58■□□□□ 0.88
SF3B1-204ENST00000414963 L3MBTL2Q969R5 705 aa20.57■□□□□ 0.88
SF3B1-204ENST00000414963 RIMS1Q86UR5 1692 aaKnown RBP20.56■□□□□ 0.88
SF3B1-204ENST00000414963 CFAP65Q6ZU64 1925 aaKnown RBP20.56■□□□□ 0.88
SF3B1-204ENST00000414963 PPP1R15AO75807 674 aaPredicted RBP20.54■□□□□ 0.88
SF3B1-204ENST00000414963 STAC3Q96MF2 364 aa20.53■□□□□ 0.88
SF3B1-204ENST00000414963 PTPRMP28827 1452 aa20.53■□□□□ 0.88
SF3B1-204ENST00000414963 ADGRB3O60242 1522 aa20.52■□□□□ 0.87
SF3B1-204ENST00000414963 NLRP1Q9C000 1473 aa20.51■□□□□ 0.87
SF3B1-204ENST00000414963 KDM4FA0A1W2PPD8 638 aa20.5■□□□□ 0.87
SF3B1-204ENST00000414963 RGL3Q3MIN7 710 aa20.5■□□□□ 0.87
SF3B1-204ENST00000414963 RPGRIP1LQ68CZ1 1315 aa20.5■□□□□ 0.87
SF3B1-204ENST00000414963 KIF1BO60333 1816 aa20.49■□□□□ 0.87
SF3B1-204ENST00000414963 TMEM131LA2VDJ0 1609 aa20.48■□□□□ 0.87
SF3B1-204ENST00000414963 CHGAP10645 457 aaKnown RBP20.46■□□□□ 0.87
SF3B1-204ENST00000414963 DCAF11Q8TEB1 546 aa20.46■□□□□ 0.87
SF3B1-204ENST00000414963 UHRF1BP1Q6BDS2 1440 aa20.45■□□□□ 0.86
SF3B1-204ENST00000414963 KDM5AP29375 1690 aaKnown RBP20.45■□□□□ 0.86
SF3B1-204ENST00000414963 A2ML1A8K2U0 1454 aa20.44■□□□□ 0.86
SF3B1-204ENST00000414963 STAG3Q9UJ98 1225 aa20.43■□□□□ 0.86
SF3B1-204ENST00000414963 ZNF326Q5BKZ1 582 aaKnown RBP20.42■□□□□ 0.86
SF3B1-204ENST00000414963 PLPPR3Q6T4P5 718 aa20.42■□□□□ 0.86
SF3B1-204ENST00000414963 SETD1BQ9UPS6 1966 aaKnown RBP20.41■□□□□ 0.86
SF3B1-204ENST00000414963 ZFYVE9O95405 1425 aa20.41■□□□□ 0.86
SF3B1-204ENST00000414963 MYOM2P54296 1465 aa20.4■□□□□ 0.86
SF3B1-204ENST00000414963 KDM2AQ9Y2K7 1162 aa20.4■□□□□ 0.86
SF3B1-204ENST00000414963 MYO3AQ8NEV4 1616 aa20.39■□□□□ 0.86
SF3B1-204ENST00000414963 NBPF8Q3BBV2 869 aa20.39■□□□□ 0.85
SF3B1-204ENST00000414963 NEXMIFQ5QGS0 1516 aa20.38■□□□□ 0.85
SF3B1-204ENST00000414963 PRAG1Q86YV5 1406 aa20.38■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 63.7 ms