RNA–Protein interactions for RNA: ENST00000413725.5

SF1-206, Transcript of splicing factor 1, human

TSL 2

Gene SF1, Length 843 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SF1-206	ENST00000413725	RIMS1	Q86UR5	1692 aa	Known RBP	19.78	■□□□□ 0.76
SF1-206	ENST00000413725	NAIP	Q13075	1403 aa		19.78	■□□□□ 0.76
SF1-206	ENST00000413725	FAM135A	Q9P2D6	1515 aa		19.77	■□□□□ 0.76
SF1-206	ENST00000413725	TRIM26	Q12899	539 aa	Predicted RBP	19.77	■□□□□ 0.76
SF1-206	ENST00000413725	GGT6	Q6P531	493 aa		19.77	■□□□□ 0.76
SF1-206	ENST00000413725	ZC3H13	Q5T200	1668 aa	Known RBP	19.77	■□□□□ 0.76
SF1-206	ENST00000413725	MROH1	Q8NDA8	1641 aa		19.76	■□□□□ 0.75
SF1-206	ENST00000413725	CLTC	Q00610	1675 aa	Known RBP	19.76	■□□□□ 0.75
SF1-206	ENST00000413725	UNC13B	O14795	1591 aa		19.76	■□□□□ 0.75
SF1-206	ENST00000413725	CEP152	O94986	1710 aa		19.76	■□□□□ 0.75
SF1-206	ENST00000413725	PRDM15	P57071	1507 aa	Predicted RBP	19.76	■□□□□ 0.75
SF1-206	ENST00000413725	MROH2A	A6NES4	1674 aa		19.75	■□□□□ 0.75
SF1-206	ENST00000413725	SENP3	Q9H4L4	574 aa	Predicted RBP	19.74	■□□□□ 0.75
SF1-206	ENST00000413725	ESF1	Q9H501	851 aa	Known RBP	19.74	■□□□□ 0.75
SF1-206	ENST00000413725	PPP6R1	Q9UPN7	881 aa		19.74	■□□□□ 0.75
SF1-206	ENST00000413725	KDM5D	Q9BY66	1539 aa		19.73	■□□□□ 0.75
SF1-206	ENST00000413725	CNTLN	Q9NXG0	1405 aa		19.72	■□□□□ 0.75
SF1-206	ENST00000413725	KANK1	Q14678	1352 aa		19.71	■□□□□ 0.75
SF1-206	ENST00000413725	CFAP65	Q6ZU64	1925 aa	Known RBP	19.7	■□□□□ 0.74
SF1-206	ENST00000413725	SETD5	Q9C0A6	1442 aa		19.69	■□□□□ 0.74
SF1-206	ENST00000413725	KDM4F	A0A1W2PPD8	638 aa		19.69	■□□□□ 0.74
SF1-206	ENST00000413725	C3	P01024	1663 aa		19.68	■□□□□ 0.74
SF1-206	ENST00000413725	ABCC3	O15438	1527 aa		19.68	■□□□□ 0.74
SF1-206	ENST00000413725	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	19.68	■□□□□ 0.74
SF1-206	ENST00000413725	PHF23	Q9BUL5	403 aa	Predicted RBP	19.68	■□□□□ 0.74
SF1-206	ENST00000413725	VWDE	Q8N2E2	1590 aa		19.68	■□□□□ 0.74
SF1-206	ENST00000413725	CAMSAP1	Q5T5Y3	1602 aa		19.68	■□□□□ 0.74
SF1-206	ENST00000413725	IQGAP3	Q86VI3	1631 aa		19.68	■□□□□ 0.74
SF1-206	ENST00000413725	WASHC2C	Q9Y4E1	1318 aa		19.67	■□□□□ 0.74
SF1-206	ENST00000413725	TET3	O43151	1660 aa		19.65	■□□□□ 0.74
SF1-206	ENST00000413725	PTPRM	P28827	1452 aa		19.65	■□□□□ 0.74
SF1-206	ENST00000413725	SETD1B	Q9UPS6	1966 aa	Known RBP	19.64	■□□□□ 0.74
SF1-206	ENST00000413725	ACIN1	Q9UKV3	1341 aa	Known RBP	19.64	■□□□□ 0.73
SF1-206	ENST00000413725	LMTK2	Q8IWU2	1503 aa		19.63	■□□□□ 0.73
SF1-206	ENST00000413725	NUP155	O75694	1391 aa		19.62	■□□□□ 0.73
SF1-206	ENST00000413725	RAB3GAP2	Q9H2M9	1393 aa		19.62	■□□□□ 0.73
SF1-206	ENST00000413725	ZMYM3	Q14202	1370 aa		19.6	■□□□□ 0.73
SF1-206	ENST00000413725	TRIM52	Q96A61	297 aa		19.6	■□□□□ 0.73
SF1-206	ENST00000413725	EFCAB6	Q5THR3	1501 aa		19.6	■□□□□ 0.73
SF1-206	ENST00000413725	PZP	P20742	1482 aa		19.58	■□□□□ 0.72
SF1-206	ENST00000413725		E9PCH4	1651 aa		19.57	■□□□□ 0.72
SF1-206	ENST00000413725	PREX1	Q8TCU6	1659 aa		19.57	■□□□□ 0.72
SF1-206	ENST00000413725	PLPPR3	Q6T4P5	718 aa		19.56	■□□□□ 0.72
SF1-206	ENST00000413725	ARHGAP31	Q2M1Z3	1444 aa		19.56	■□□□□ 0.72
SF1-206	ENST00000413725	HRC	P23327	699 aa		19.55	■□□□□ 0.72
SF1-206	ENST00000413725	CEBPA	P49715	358 aa	Predicted RBP	19.54	■□□□□ 0.72
SF1-206	ENST00000413725	RPRD2	Q5VT52	1461 aa	Known RBP	19.54	■□□□□ 0.72
SF1-206	ENST00000413725	NPAT	Q14207	1427 aa		19.53	■□□□□ 0.72
SF1-206	ENST00000413725	SPHKAP	Q2M3C7	1700 aa		19.51	■□□□□ 0.71
SF1-206	ENST00000413725	PCGF6	Q9BYE7	350 aa		19.51	■□□□□ 0.71
SF1-206	ENST00000413725	SPATA31D1	Q6ZQQ2	1576 aa		19.51	■□□□□ 0.71
SF1-206	ENST00000413725	ERVK-7	P63135	1459 aa		19.5	■□□□□ 0.71
SF1-206	ENST00000413725	SLC4A1AP	Q9BWU0	796 aa	Known RBP	19.5	■□□□□ 0.71
SF1-206	ENST00000413725	MYO3A	Q8NEV4	1616 aa		19.48	■□□□□ 0.71
SF1-206	ENST00000413725	FBXO31	Q5XUX0	539 aa	Predicted RBP	19.46	■□□□□ 0.71
SF1-206	ENST00000413725	MPHOSPH9	Q99550	1183 aa		19.46	■□□□□ 0.71
SF1-206	ENST00000413725	TNR	Q92752	1358 aa		19.45	■□□□□ 0.7
SF1-206	ENST00000413725	ZNF142	P52746	1687 aa	Predicted RBP	19.45	■□□□□ 0.7
SF1-206	ENST00000413725	PKD2	Q13563	968 aa		19.44	■□□□□ 0.7
SF1-206	ENST00000413725	SYNM	O15061	1565 aa		19.44	■□□□□ 0.7
SF1-206	ENST00000413725	NOS1	P29475	1434 aa		19.43	■□□□□ 0.7
SF1-206	ENST00000413725	UHRF1BP1	Q6BDS2	1440 aa		19.42	■□□□□ 0.7
SF1-206	ENST00000413725	NLRP1	Q9C000	1473 aa		19.41	■□□□□ 0.7
SF1-206	ENST00000413725	CEP170B	Q9Y4F5	1589 aa	Predicted RBP	19.4	■□□□□ 0.7
SF1-206	ENST00000413725	KIF1B	O60333	1816 aa		19.4	■□□□□ 0.7
SF1-206	ENST00000413725	TRPM2	O94759	1503 aa		19.4	■□□□□ 0.7
SF1-206	ENST00000413725	PIK3C2B	O00750	1634 aa		19.4	■□□□□ 0.7
SF1-206	ENST00000413725	MYO5B	Q9ULV0	1848 aa		19.39	■□□□□ 0.69
SF1-206	ENST00000413725	PTPRT	O14522	1441 aa		19.38	■□□□□ 0.69
SF1-206	ENST00000413725	KDM5A	P29375	1690 aa	Known RBP	19.38	■□□□□ 0.69
SF1-206	ENST00000413725	A2ML1	A8K2U0	1454 aa		19.37	■□□□□ 0.69
SF1-206	ENST00000413725	UBR1	Q8IWV7	1749 aa		19.37	■□□□□ 0.69
SF1-206	ENST00000413725	FOXD1	Q16676	465 aa		19.35	■□□□□ 0.69
SF1-206	ENST00000413725	SLC52A1	Q9NWF4	448 aa		19.35	■□□□□ 0.69
SF1-206	ENST00000413725	CLTCL1	P53675	1640 aa		19.35	■□□□□ 0.69
SF1-206	ENST00000413725	LMTK3	Q96Q04	1460 aa		19.35	■□□□□ 0.69
SF1-206	ENST00000413725	UGGT1	Q9NYU2	1555 aa		19.34	■□□□□ 0.69
SF1-206	ENST00000413725	ADGRB3	O60242	1522 aa		19.32	■□□□□ 0.68
SF1-206	ENST00000413725	PLA2R1	Q13018	1463 aa		19.32	■□□□□ 0.68
SF1-206	ENST00000413725	TMEM131L	A2VDJ0	1609 aa		19.3	■□□□□ 0.68
SF1-206	ENST00000413725	IDI1	Q13907	227 aa		19.3	■□□□□ 0.68
SF1-206	ENST00000413725	CCDC144A	A2RUR9	1427 aa		19.3	■□□□□ 0.68
SF1-206	ENST00000413725	DHX57	Q6P158	1386 aa	Known RBP	19.3	■□□□□ 0.68
SF1-206	ENST00000413725	STAG3	Q9UJ98	1225 aa		19.29	■□□□□ 0.68
SF1-206	ENST00000413725	POLR1A	O95602	1720 aa	Predicted RBP	19.28	■□□□□ 0.68
SF1-206	ENST00000413725	ANKRD30B	Q9BXX2	1392 aa		19.27	■□□□□ 0.68
SF1-206	ENST00000413725	THEMIS	Q8N1K5	641 aa	Predicted RBP	19.26	■□□□□ 0.67
SF1-206	ENST00000413725	CHGA	P10645	457 aa	Known RBP	19.25	■□□□□ 0.67
SF1-206	ENST00000413725	HSPA2	P54652	639 aa		19.22	■□□□□ 0.67
SF1-206	ENST00000413725	STRC	Q7RTU9	1775 aa		19.21	■□□□□ 0.67
SF1-206	ENST00000413725	SLIT1	O75093	1534 aa		19.21	■□□□□ 0.67
SF1-206	ENST00000413725	NEURL4	Q96JN8	1562 aa		19.21	■□□□□ 0.67
SF1-206	ENST00000413725	PPL	O60437	1756 aa		19.19	■□□□□ 0.66
SF1-206	ENST00000413725	ARHGAP23	Q9P227	1491 aa		19.19	■□□□□ 0.66
SF1-206	ENST00000413725	TMEM2	Q9UHN6	1383 aa		19.19	■□□□□ 0.66
SF1-206	ENST00000413725	IFT172	Q9UG01	1749 aa		19.18	■□□□□ 0.66
SF1-206	ENST00000413725	ZNF326	Q5BKZ1	582 aa	Known RBP	19.17	■□□□□ 0.66
SF1-206	ENST00000413725	SPATA31E1	Q6ZUB1	1445 aa		19.16	■□□□□ 0.66
SF1-206	ENST00000413725	SCAF11	Q99590	1463 aa	Known RBP	19.16	■□□□□ 0.66
SF1-206	ENST00000413725	HDGF	P51858	240 aa	Known RBP	19.15	■□□□□ 0.66

Retrieved 100 of 20,778 RNA–protein pairs in 80.3 ms