RNA–Protein interactions for RNA: ENST00000409588.1

NIF3L1-205, Transcript of NGG1 interacting factor 3 like 1, humanhuman

TSL 1 (best) BASIC

Gene NIF3L1, Length 1,269 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIF3L1-205ENST00000409588 C3P01024 1663 aa22.68■■□□□ 1.22
NIF3L1-205ENST00000409588 KIF3BO15066 747 aa22.67■■□□□ 1.22
NIF3L1-205ENST00000409588 ILDR1Q86SU0 546 aaPredicted RBP22.65■■□□□ 1.22
NIF3L1-205ENST00000409588 FAM135AQ9P2D6 1515 aa22.63■■□□□ 1.21
NIF3L1-205ENST00000409588 MAST1Q9Y2H9 1570 aa22.61■■□□□ 1.21
NIF3L1-205ENST00000409588 WASHC2CQ9Y4E1 1318 aa22.6■■□□□ 1.21
NIF3L1-205ENST00000409588 CNKSR2Q8WXI2 1034 aa22.6■■□□□ 1.21
NIF3L1-205ENST00000409588 CLTCQ00610 1675 aaKnown RBP22.58■■□□□ 1.2
NIF3L1-205ENST00000409588 PTPRKQ15262 1439 aa22.57■■□□□ 1.2
NIF3L1-205ENST00000409588 FBXO41Q8TF61 875 aa22.57■■□□□ 1.2
NIF3L1-205ENST00000409588 FGD6Q6ZV73 1430 aa22.54■■□□□ 1.2
NIF3L1-205ENST00000409588 PTPRTO14522 1441 aa22.53■■□□□ 1.2
NIF3L1-205ENST00000409588 SHANK2Q9UPX8 1470 aa22.52■■□□□ 1.2
NIF3L1-205ENST00000409588 KDM5DQ9BY66 1539 aa22.52■■□□□ 1.19
NIF3L1-205ENST00000409588 PTPN23Q9H3S7 1636 aa22.51■■□□□ 1.19
NIF3L1-205ENST00000409588 TCOF1Q13428 1488 aaKnown RBP22.51■■□□□ 1.19
NIF3L1-205ENST00000409588 ABCC5O15440 1437 aa22.5■■□□□ 1.19
NIF3L1-205ENST00000409588 PKD2Q13563 968 aa22.5■■□□□ 1.19
NIF3L1-205ENST00000409588 DUOX2Q9NRD8 1548 aa22.5■■□□□ 1.19
NIF3L1-205ENST00000409588 PZPP20742 1482 aa22.48■■□□□ 1.19
NIF3L1-205ENST00000409588 STRCQ7RTU9 1775 aa22.48■■□□□ 1.19
NIF3L1-205ENST00000409588 CERKQ8TCT0 537 aa22.48■■□□□ 1.19
NIF3L1-205ENST00000409588 EIF2AK4Q9P2K8 1649 aaKnown RBP22.48■■□□□ 1.19
NIF3L1-205ENST00000409588 NCOA1Q15788 1441 aa22.48■■□□□ 1.19
NIF3L1-205ENST00000409588 RNF216Q9NWF9 866 aaPredicted RBP22.47■■□□□ 1.19
NIF3L1-205ENST00000409588 DAPK1P53355 1430 aa22.47■■□□□ 1.19
NIF3L1-205ENST00000409588 KIF15Q9NS87 1388 aa22.46■■□□□ 1.19
NIF3L1-205ENST00000409588 RRP7BPQ9NSQ0 103 aa22.45■■□□□ 1.18
NIF3L1-205ENST00000409588 ANKRD30AQ9BXX3 1397 aa22.45■■□□□ 1.18
NIF3L1-205ENST00000409588 PLA2R1Q13018 1463 aa22.45■■□□□ 1.18
NIF3L1-205ENST00000409588 FBXO31Q5XUX0 539 aaPredicted RBP22.44■■□□□ 1.18
NIF3L1-205ENST00000409588 TNRQ92752 1358 aa22.44■■□□□ 1.18
NIF3L1-205ENST00000409588 ERBINQ96RT1 1412 aa22.44■■□□□ 1.18
NIF3L1-205ENST00000409588 RNF17Q9BXT8 1623 aaKnown RBP22.44■■□□□ 1.18
NIF3L1-205ENST00000409588 RNF39Q9H2S5 420 aa22.44■■□□□ 1.18
NIF3L1-205ENST00000409588 A2ML1A8K2U0 1454 aa22.43■■□□□ 1.18
NIF3L1-205ENST00000409588 DNMT1P26358 1616 aaKnown RBP22.42■■□□□ 1.18
NIF3L1-205ENST00000409588 CAMSAP1Q5T5Y3 1602 aa22.42■■□□□ 1.18
NIF3L1-205ENST00000409588 THEMISQ8N1K5 641 aaPredicted RBP22.42■■□□□ 1.18
NIF3L1-205ENST00000409588 ZNF142P52746 1687 aaPredicted RBP22.42■■□□□ 1.18
NIF3L1-205ENST00000409588 CEP170BQ9Y4F5 1589 aaPredicted RBP22.42■■□□□ 1.18
NIF3L1-205ENST00000409588 MYO3AQ8NEV4 1616 aa22.41■■□□□ 1.18
NIF3L1-205ENST00000409588 ZC3H13Q5T200 1668 aaKnown RBP22.39■■□□□ 1.18
NIF3L1-205ENST00000409588 FAM50AQ14320 339 aaKnown RBP22.39■■□□□ 1.17
NIF3L1-205ENST00000409588 NLRP1Q9C000 1473 aa22.39■■□□□ 1.17
NIF3L1-205ENST00000409588 CROCC2H7BZ55 1655 aa22.39■■□□□ 1.17
NIF3L1-205ENST00000409588 KANK1Q14678 1352 aa22.38■■□□□ 1.17
NIF3L1-205ENST00000409588 ABCC3O15438 1527 aa22.37■■□□□ 1.17
NIF3L1-205ENST00000409588 NCKAP5LQ9HCH0 1330 aa22.37■■□□□ 1.17
NIF3L1-205ENST00000409588 CHIC2Q9UKJ5 165 aa22.37■■□□□ 1.17
NIF3L1-205ENST00000409588 ARHGAP31Q2M1Z3 1444 aa22.35■■□□□ 1.17
NIF3L1-205ENST00000409588 ANKLE2Q86XL3 938 aa22.34■■□□□ 1.17
NIF3L1-205ENST00000409588 ADGRL2O95490 1459 aa22.33■■□□□ 1.16
NIF3L1-205ENST00000409588 GRWD1Q9BQ67 446 aaKnown RBP eCLIP22.31■■□□□ 1.16
NIF3L1-205ENST00000409588 MROH1Q8NDA8 1641 aa22.31■■□□□ 1.16
NIF3L1-205ENST00000409588 PRDM15P57071 1507 aaPredicted RBP22.31■■□□□ 1.16
NIF3L1-205ENST00000409588 SPATA31D1Q6ZQQ2 1576 aa22.3■■□□□ 1.16
NIF3L1-205ENST00000409588 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP22.29■■□□□ 1.16
NIF3L1-205ENST00000409588 UGGT1Q9NYU2 1555 aa22.28■■□□□ 1.16
NIF3L1-205ENST00000409588 ERVK-7P63135 1459 aa22.28■■□□□ 1.16
NIF3L1-205ENST00000409588 IQSEC2Q5JU85 1478 aa22.28■■□□□ 1.16
NIF3L1-205ENST00000409588 DEPDC5O75140 1603 aa22.26■■□□□ 1.15
NIF3L1-205ENST00000409588 ANKRD50Q9ULJ7 1429 aa22.25■■□□□ 1.15
NIF3L1-205ENST00000409588 ROCK1Q13464 1354 aa22.25■■□□□ 1.15
NIF3L1-205ENST00000409588 LTBP4Q8N2S1 1624 aa22.24■■□□□ 1.15
NIF3L1-205ENST00000409588 LMTK2Q8IWU2 1503 aa22.24■■□□□ 1.15
NIF3L1-205ENST00000409588 MED14O60244 1454 aa22.21■■□□□ 1.15
NIF3L1-205ENST00000409588 CEP152O94986 1710 aa22.2■■□□□ 1.14
NIF3L1-205ENST00000409588 VWDEQ8N2E2 1590 aa22.2■■□□□ 1.14
NIF3L1-205ENST00000409588 SLC52A1Q9NWF4 448 aa22.19■■□□□ 1.14
NIF3L1-205ENST00000409588 ZNF335Q9H4Z2 1342 aaPredicted RBP22.19■■□□□ 1.14
NIF3L1-205ENST00000409588 EID1Q9Y6B2 187 aa22.16■■□□□ 1.14
NIF3L1-205ENST00000409588 NPHP4O75161 1426 aaPredicted RBP22.15■■□□□ 1.14
NIF3L1-205ENST00000409588 POLR1AO95602 1720 aaPredicted RBP22.15■■□□□ 1.14
NIF3L1-205ENST00000409588 STAG3Q9UJ98 1225 aa22.15■■□□□ 1.14
NIF3L1-205ENST00000409588 RPRD2Q5VT52 1461 aaKnown RBP22.15■■□□□ 1.14
NIF3L1-205ENST00000409588 CFAP65Q6ZU64 1925 aaKnown RBP22.14■■□□□ 1.13
NIF3L1-205ENST00000409588 IDI1Q13907 227 aa22.13■■□□□ 1.13
NIF3L1-205ENST00000409588 NEURL4Q96JN8 1562 aa22.12■■□□□ 1.13
NIF3L1-205ENST00000409588 TXNDC2Q86VQ3 553 aa22.12■■□□□ 1.13
NIF3L1-205ENST00000409588 PPARGC1BQ86YN6 1023 aaKnown RBP22.12■■□□□ 1.13
NIF3L1-205ENST00000409588 NOS1P29475 1434 aa22.11■■□□□ 1.13
NIF3L1-205ENST00000409588 CPS1P31327 1500 aa22.11■■□□□ 1.13
NIF3L1-205ENST00000409588 SLIT1O75093 1534 aa22.1■■□□□ 1.13
NIF3L1-205ENST00000409588 EFCAB6Q5THR3 1501 aa22.1■■□□□ 1.13
NIF3L1-205ENST00000409588 ARHGAP23Q9P227 1491 aa22.09■■□□□ 1.13
NIF3L1-205ENST00000409588 UBR1Q8IWV7 1749 aa22.09■■□□□ 1.13
NIF3L1-205ENST00000409588 ITGAEP38570 1179 aa22.09■■□□□ 1.13
NIF3L1-205ENST00000409588 KDM5AP29375 1690 aaKnown RBP22.09■■□□□ 1.13
NIF3L1-205ENST00000409588 HDGFP51858 240 aaKnown RBP22.08■■□□□ 1.13
NIF3L1-205ENST00000409588 TMEM2Q9UHN6 1383 aa22.08■■□□□ 1.12
NIF3L1-205ENST00000409588 RRBP1Q9P2E9 1410 aaKnown RBP22.07■■□□□ 1.12
NIF3L1-205ENST00000409588 SCAF11Q99590 1463 aaKnown RBP22.07■■□□□ 1.12
NIF3L1-205ENST00000409588 LTKP29376 864 aa22.06■■□□□ 1.12
NIF3L1-205ENST00000409588 C1QBPQ07021 282 aaKnown RBP22.06■■□□□ 1.12
NIF3L1-205ENST00000409588 IQGAP1P46940 1657 aa22.04■■□□□ 1.12
NIF3L1-205ENST00000409588 UBAP1LF5GYI3 381 aa22.04■■□□□ 1.12
NIF3L1-205ENST00000409588 UNC13BO14795 1591 aa22.04■■□□□ 1.12
NIF3L1-205ENST00000409588 NUP155O75694 1391 aa22.03■■□□□ 1.12
NIF3L1-205ENST00000409588 TOM1O60784 492 aa22.03■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 7 ms