RNA–Protein interactions for RNA: ENST00000409285.6

VSX1-203, Transcript of visual system homeobox 1, humanhuman

TSL 1 (best)

Gene VSX1, Length 1,486 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1-203ENST00000409285 MROH1Q8NDA8 1641 aa30.66■■■□□ 2.5
VSX1-203ENST00000409285 ACIN1Q9UKV3 1341 aaKnown RBP30.63■■■□□ 2.49
VSX1-203ENST00000409285 HRCP23327 699 aa30.63■■■□□ 2.49
VSX1-203ENST00000409285 KDM5DQ9BY66 1539 aa30.61■■■□□ 2.49
VSX1-203ENST00000409285 IQGAP3Q86VI3 1631 aa30.59■■■□□ 2.49
VSX1-203ENST00000409285 FAM135AQ9P2D6 1515 aa30.59■■■□□ 2.49
VSX1-203ENST00000409285 ZC3H13Q5T200 1668 aaKnown RBP30.58■■■□□ 2.49
VSX1-203ENST00000409285 VWDEQ8N2E2 1590 aa30.58■■■□□ 2.49
VSX1-203ENST00000409285 KIF3BO15066 747 aa30.52■■■□□ 2.48
VSX1-203ENST00000409285 CEP152O94986 1710 aa30.51■■■□□ 2.48
VSX1-203ENST00000409285 TET3O43151 1660 aa30.48■■■□□ 2.47
VSX1-203ENST00000409285 LMTK2Q8IWU2 1503 aa30.47■■■□□ 2.47
VSX1-203ENST00000409285 FER1L4A9Z1Z3 1794 aa30.47■■■□□ 2.47
VSX1-203ENST00000409285 ABCC3O15438 1527 aa30.44■■■□□ 2.46
VSX1-203ENST00000409285 MROH2AA6NES4 1674 aa30.44■■■□□ 2.46
VSX1-203ENST00000409285 PZPP20742 1482 aa30.43■■■□□ 2.46
VSX1-203ENST00000409285 CAMSAP1Q5T5Y3 1602 aa30.43■■■□□ 2.46
VSX1-203ENST00000409285 ADAMTSL3P82987 1691 aa30.43■■■□□ 2.46
VSX1-203ENST00000409285 PPP6R1Q9UPN7 881 aa30.43■■■□□ 2.46
VSX1-203ENST00000409285 CLTCQ00610 1675 aaKnown RBP30.43■■■□□ 2.46
VSX1-203ENST00000409285 NUP155O75694 1391 aa30.42■■■□□ 2.46
VSX1-203ENST00000409285 KANK1Q14678 1352 aa30.42■■■□□ 2.46
VSX1-203ENST00000409285 ARID4BQ4LE39 1312 aaPredicted RBP30.42■■■□□ 2.46
VSX1-203ENST00000409285 KDM4FA0A1W2PPD8 638 aa30.4■■■□□ 2.46
VSX1-203ENST00000409285 EFCAB6Q5THR3 1501 aa30.39■■■□□ 2.46
VSX1-203ENST00000409285 GGT6Q6P531 493 aa30.38■■■□□ 2.45
VSX1-203ENST00000409285 E9PCH4 1651 aa30.37■■■□□ 2.45
VSX1-203ENST00000409285 MADDQ8WXG6 1647 aa30.34■■■□□ 2.45
VSX1-203ENST00000409285 TRIM52Q96A61 297 aa30.34■■■□□ 2.45
VSX1-203ENST00000409285 CNTLNQ9NXG0 1405 aa30.33■■■□□ 2.45
VSX1-203ENST00000409285 GRWD1Q9BQ67 446 aaKnown RBP eCLIP30.33■■■□□ 2.45
VSX1-203ENST00000409285 RPRD2Q5VT52 1461 aaKnown RBP30.3■■■□□ 2.44
VSX1-203ENST00000409285 WASHC2CQ9Y4E1 1318 aa30.29■■■□□ 2.44
VSX1-203ENST00000409285 ARHGAP31Q2M1Z3 1444 aa30.29■■■□□ 2.44
VSX1-203ENST00000409285 RIMS1Q86UR5 1692 aaKnown RBP30.28■■■□□ 2.44
VSX1-203ENST00000409285 DHX57Q6P158 1386 aaKnown RBP30.27■■■□□ 2.44
VSX1-203ENST00000409285 MLECQ14165 292 aa30.27■■■□□ 2.44
VSX1-203ENST00000409285 SPHKAPQ2M3C7 1700 aa30.27■■■□□ 2.44
VSX1-203ENST00000409285 C3P01024 1663 aa30.27■■■□□ 2.44
VSX1-203ENST00000409285 AEBP2Q6ZN18 517 aaPredicted RBP30.26■■■□□ 2.44
VSX1-203ENST00000409285 MPHOSPH9Q99550 1183 aa30.25■■■□□ 2.43
VSX1-203ENST00000409285 SLC4A1APQ9BWU0 796 aaKnown RBP30.25■■■□□ 2.43
VSX1-203ENST00000409285 PREX1Q8TCU6 1659 aa30.24■■■□□ 2.43
VSX1-203ENST00000409285 CFAP65Q6ZU64 1925 aaKnown RBP30.24■■■□□ 2.43
VSX1-203ENST00000409285 NPATQ14207 1427 aa30.22■■■□□ 2.43
VSX1-203ENST00000409285 ESF1Q9H501 851 aaKnown RBP30.19■■■□□ 2.42
VSX1-203ENST00000409285 SPATA31D1Q6ZQQ2 1576 aa30.16■■■□□ 2.42
VSX1-203ENST00000409285 PKD2Q13563 968 aa30.16■■■□□ 2.42
VSX1-203ENST00000409285 ZMYM3Q14202 1370 aa30.15■■■□□ 2.42
VSX1-203ENST00000409285 TRPM2O94759 1503 aa30.14■■■□□ 2.42
VSX1-203ENST00000409285 PTPRTO14522 1441 aa30.13■■■□□ 2.41
VSX1-203ENST00000409285 NOS1P29475 1434 aa30.11■■■□□ 2.41
VSX1-203ENST00000409285 PTPRMP28827 1452 aa30.1■■■□□ 2.41
VSX1-203ENST00000409285 ERVK-7P63135 1459 aa30.1■■■□□ 2.41
VSX1-203ENST00000409285 PIK3C2BO00750 1634 aa30.1■■■□□ 2.41
VSX1-203ENST00000409285 SYNMO15061 1565 aa30.1■■■□□ 2.41
VSX1-203ENST00000409285 CLSPNQ9HAW4 1339 aa30.09■■■□□ 2.41
VSX1-203ENST00000409285 PLA2R1Q13018 1463 aa30.07■■■□□ 2.41
VSX1-203ENST00000409285 ANKRD30BQ9BXX2 1392 aa30.07■■■□□ 2.4
VSX1-203ENST00000409285 SETD1BQ9UPS6 1966 aaKnown RBP30.05■■■□□ 2.4
VSX1-203ENST00000409285 CLTCL1P53675 1640 aa30.03■■■□□ 2.4
VSX1-203ENST00000409285 KIF1BO60333 1816 aa30.03■■■□□ 2.4
VSX1-203ENST00000409285 FOXD1Q16676 465 aa30.02■■■□□ 2.4
VSX1-203ENST00000409285 KDM5AP29375 1690 aaKnown RBP30■■■□□ 2.39
VSX1-203ENST00000409285 CCER1Q8TC90 406 aaPredicted RBP29.99■■■□□ 2.39
VSX1-203ENST00000409285 MYO3AQ8NEV4 1616 aa29.97■■■□□ 2.39
VSX1-203ENST00000409285 NEURL4Q96JN8 1562 aa29.96■■■□□ 2.39
VSX1-203ENST00000409285 CCDC144AA2RUR9 1427 aa29.95■■■□□ 2.39
VSX1-203ENST00000409285 UGGT1Q9NYU2 1555 aa29.95■■■□□ 2.38
VSX1-203ENST00000409285 ZNF142P52746 1687 aaPredicted RBP29.94■■■□□ 2.38
VSX1-203ENST00000409285 FBXO31Q5XUX0 539 aaPredicted RBP29.93■■■□□ 2.38
VSX1-203ENST00000409285 PLPPR3Q6T4P5 718 aa29.93■■■□□ 2.38
VSX1-203ENST00000409285 TNRQ92752 1358 aa29.92■■■□□ 2.38
VSX1-203ENST00000409285 NLRP1Q9C000 1473 aa29.92■■■□□ 2.38
VSX1-203ENST00000409285 MYO5BQ9ULV0 1848 aa29.92■■■□□ 2.38
VSX1-203ENST00000409285 CEBPAP49715 358 aaPredicted RBP29.91■■■□□ 2.38
VSX1-203ENST00000409285 SLC52A1Q9NWF4 448 aa29.89■■■□□ 2.38
VSX1-203ENST00000409285 TMEM131LA2VDJ0 1609 aa29.88■■■□□ 2.37
VSX1-203ENST00000409285 UBR1Q8IWV7 1749 aa29.88■■■□□ 2.37
VSX1-203ENST00000409285 ADGRB3O60242 1522 aa29.88■■■□□ 2.37
VSX1-203ENST00000409285 CEP170BQ9Y4F5 1589 aaPredicted RBP29.84■■■□□ 2.37
VSX1-203ENST00000409285 IFT172Q9UG01 1749 aa29.82■■■□□ 2.36
VSX1-203ENST00000409285 SPATA31E1Q6ZUB1 1445 aa29.82■■■□□ 2.36
VSX1-203ENST00000409285 A2ML1A8K2U0 1454 aa29.8■■■□□ 2.36
VSX1-203ENST00000409285 IDI1Q13907 227 aa29.79■■■□□ 2.36
VSX1-203ENST00000409285 PPLO60437 1756 aa29.77■■■□□ 2.36
VSX1-203ENST00000409285 SIN3AQ96ST3 1273 aa29.77■■■□□ 2.36
VSX1-203ENST00000409285 UHRF1BP1Q6BDS2 1440 aa29.73■■■□□ 2.35
VSX1-203ENST00000409285 LMTK3Q96Q04 1460 aa29.69■■■□□ 2.34
VSX1-203ENST00000409285 TIMELESSQ9UNS1 1208 aa29.68■■■□□ 2.34
VSX1-203ENST00000409285 NEXMIFQ5QGS0 1516 aa29.68■■■□□ 2.34
VSX1-203ENST00000409285 NEUROD1Q13562 356 aa29.68■■■□□ 2.34
VSX1-203ENST00000409285 SLIT1O75093 1534 aa29.67■■■□□ 2.34
VSX1-203ENST00000409285 TONSLQ96HA7 1378 aa29.65■■■□□ 2.34
VSX1-203ENST00000409285 ARHGAP23Q9P227 1491 aa29.63■■■□□ 2.33
VSX1-203ENST00000409285 MYOM2P54296 1465 aa29.62■■■□□ 2.33
VSX1-203ENST00000409285 ZFYVE9O95405 1425 aa29.61■■■□□ 2.33
VSX1-203ENST00000409285 POLR1AO95602 1720 aaPredicted RBP29.61■■■□□ 2.33
VSX1-203ENST00000409285 RPGRIP1LQ68CZ1 1315 aa29.61■■■□□ 2.33
VSX1-203ENST00000409285 STAG3Q9UJ98 1225 aa29.6■■■□□ 2.33
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms