RNA–Protein interactions for RNA: ENST00000406327.2

HMGB3P18-201, Transcript of high mobility group box 3 pseudogene 18, humanhuman

BASIC

Gene HMGB3P18, Length 590 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P18-201ENST00000406327 TBC1D12O60347 775 aa9.28□□□□□ -0.92
HMGB3P18-201ENST00000406327 MINK1Q8N4C8 1332 aaPredicted RBP9.28□□□□□ -0.92
HMGB3P18-201ENST00000406327 GRXCR2A6NFK2 248 aa9.27□□□□□ -0.93
HMGB3P18-201ENST00000406327 PDE4DQ08499 809 aa9.27□□□□□ -0.93
HMGB3P18-201ENST00000406327 KDM4CQ9H3R0 1056 aa9.27□□□□□ -0.93
HMGB3P18-201ENST00000406327 HCSTQ9UBK5 93 aa9.27□□□□□ -0.93
HMGB3P18-201ENST00000406327 NUTM2FA1L443 756 aa9.26□□□□□ -0.93
HMGB3P18-201ENST00000406327 MAP2K5Q13163 448 aa9.26□□□□□ -0.93
HMGB3P18-201ENST00000406327 GPBP1L1Q9HC44 474 aaPredicted RBP9.25□□□□□ -0.93
HMGB3P18-201ENST00000406327 GPR37O15354 613 aa9.24□□□□□ -0.93
HMGB3P18-201ENST00000406327 HIC1Q14526 733 aa9.24□□□□□ -0.93
HMGB3P18-201ENST00000406327 OXER1Q8TDS5 423 aa9.24□□□□□ -0.93
HMGB3P18-201ENST00000406327 FCHSD2O94868 740 aa9.23□□□□□ -0.93
HMGB3P18-201ENST00000406327 UPF1Q92900 1129 aaKnown RBP eCLIP9.23□□□□□ -0.93
HMGB3P18-201ENST00000406327 GNPATO15228 680 aa9.22□□□□□ -0.93
HMGB3P18-201ENST00000406327 NUDT7P0C024 238 aa9.22□□□□□ -0.93
HMGB3P18-201ENST00000406327 DDRGK1Q96HY6 314 aa9.21□□□□□ -0.94
HMGB3P18-201ENST00000406327 AXIN2Q9Y2T1 843 aa9.21□□□□□ -0.94
HMGB3P18-201ENST00000406327 OSBPP22059 807 aa9.2□□□□□ -0.94
HMGB3P18-201ENST00000406327 POTEEQ6S8J3 1075 aa9.2□□□□□ -0.94
HMGB3P18-201ENST00000406327 IL27Q8NEV9 243 aa9.2□□□□□ -0.94
HMGB3P18-201ENST00000406327 CCDC102AQ96A19 550 aa9.2□□□□□ -0.94
HMGB3P18-201ENST00000406327 IRF6O14896 467 aa9.19□□□□□ -0.94
HMGB3P18-201ENST00000406327 AMHR2Q16671 573 aa9.19□□□□□ -0.94
HMGB3P18-201ENST00000406327 LHX6Q9UPM6 363 aa9.19□□□□□ -0.94
HMGB3P18-201ENST00000406327 EVI5O60447 810 aa9.18□□□□□ -0.94
HMGB3P18-201ENST00000406327 DDX12PQ92771 950 aa9.17□□□□□ -0.94
HMGB3P18-201ENST00000406327 ADGRD1Q6QNK2 874 aa9.16□□□□□ -0.94
HMGB3P18-201ENST00000406327 SLC34A2O95436 690 aa9.15□□□□□ -0.94
HMGB3P18-201ENST00000406327 HOMEZQ8IX15 550 aa9.15□□□□□ -0.94
HMGB3P18-201ENST00000406327 PTCD2Q8WV60 388 aaKnown RBP9.15□□□□□ -0.94
HMGB3P18-201ENST00000406327 PCDHGA4Q9Y5G9 962 aa9.15□□□□□ -0.94
HMGB3P18-201ENST00000406327 ARHGAP33O14559 1287 aa9.14□□□□□ -0.95
HMGB3P18-201ENST00000406327 EPAS1Q99814 870 aa9.13□□□□□ -0.95
HMGB3P18-201ENST00000406327 PSDA5PKW4 1024 aaPredicted RBP9.12□□□□□ -0.95
HMGB3P18-201ENST00000406327 PTGDRQ13258 359 aa9.12□□□□□ -0.95
HMGB3P18-201ENST00000406327 TTLL12Q14166 644 aaPredicted RBP9.12□□□□□ -0.95
HMGB3P18-201ENST00000406327 PARP9Q8IXQ6 854 aa9.11□□□□□ -0.95
HMGB3P18-201ENST00000406327 FAM117AQ9C073 453 aa9.11□□□□□ -0.95
HMGB3P18-201ENST00000406327 TK2O00142 265 aa9.1□□□□□ -0.95
HMGB3P18-201ENST00000406327 PHF14O94880 888 aa9.1□□□□□ -0.95
HMGB3P18-201ENST00000406327 ANO8Q9HCE9 1232 aaPredicted RBP9.1□□□□□ -0.95
HMGB3P18-201ENST00000406327 GOPCQ9HD26 462 aa9.09□□□□□ -0.95
HMGB3P18-201ENST00000406327 EN1Q05925 392 aaPredicted RBP9.08□□□□□ -0.96
HMGB3P18-201ENST00000406327 MAP3K7O43318 606 aa9.07□□□□□ -0.96
HMGB3P18-201ENST00000406327 HRO43593 1189 aa9.07□□□□□ -0.96
HMGB3P18-201ENST00000406327 ZMYND15Q9H091 742 aa9.06□□□□□ -0.96
HMGB3P18-201ENST00000406327 SUPT5HO00267 1087 aaKnown RBP9.05□□□□□ -0.96
HMGB3P18-201ENST00000406327 FECHP22830 423 aa9.05□□□□□ -0.96
HMGB3P18-201ENST00000406327 CLCN1P35523 988 aa9.05□□□□□ -0.96
HMGB3P18-201ENST00000406327 FLIIQ13045 1269 aa9.05□□□□□ -0.96
HMGB3P18-201ENST00000406327 FBXW7Q969H0 707 aa9.05□□□□□ -0.96
HMGB3P18-201ENST00000406327 KCTD12Q96CX2 325 aaKnown RBP9.05□□□□□ -0.96
HMGB3P18-201ENST00000406327 PLEKHG3A1L390 1219 aa9.04□□□□□ -0.96
HMGB3P18-201ENST00000406327 TYW1BQ6NUM6 668 aa9.04□□□□□ -0.96
HMGB3P18-201ENST00000406327 GIGYF2Q6Y7W6 1299 aaKnown RBP9.04□□□□□ -0.96
HMGB3P18-201ENST00000406327 STAC3Q96MF2 364 aa9.04□□□□□ -0.96
HMGB3P18-201ENST00000406327 RSPH6AQ9H0K4 717 aa9.04□□□□□ -0.96
HMGB3P18-201ENST00000406327 DMRTA1Q5VZB9 504 aa9.03□□□□□ -0.96
HMGB3P18-201ENST00000406327 CERKQ8TCT0 537 aa9.03□□□□□ -0.96
HMGB3P18-201ENST00000406327 RGS20O76081 388 aa9.02□□□□□ -0.97
HMGB3P18-201ENST00000406327 PRIM1P49642 420 aaKnown RBP9.02□□□□□ -0.97
HMGB3P18-201ENST00000406327 PSEN2P49810 448 aa9.02□□□□□ -0.97
HMGB3P18-201ENST00000406327 PCMTD1Q96MG8 357 aaPredicted RBP9.02□□□□□ -0.97
HMGB3P18-201ENST00000406327 JPH4Q96JJ6 628 aa9.01□□□□□ -0.97
HMGB3P18-201ENST00000406327 KDM4FA0A1W2PPD8 638 aa9□□□□□ -0.97
HMGB3P18-201ENST00000406327 GPCPD1Q9NPB8 672 aa9□□□□□ -0.97
HMGB3P18-201ENST00000406327 PPP4R3BQ5MIZ7 849 aa8.99□□□□□ -0.97
HMGB3P18-201ENST00000406327 CDHR5Q9HBB8 845 aa8.99□□□□□ -0.97
HMGB3P18-201ENST00000406327 PCDHGA10Q9Y5H3 936 aa8.99□□□□□ -0.97
HMGB3P18-201ENST00000406327 OATP04181 439 aa8.98□□□□□ -0.97
HMGB3P18-201ENST00000406327 RBM33Q96EV2 1170 aaKnown RBP8.98□□□□□ -0.97
HMGB3P18-201ENST00000406327 IRX2Q9BZI1 471 aaPredicted RBP8.98□□□□□ -0.97
HMGB3P18-201ENST00000406327 NPDC1Q9NQX5 325 aaPredicted RBP8.98□□□□□ -0.97
HMGB3P18-201ENST00000406327 SH3D19Q5HYK7 790 aa8.97□□□□□ -0.97
HMGB3P18-201ENST00000406327 MS4A1P11836 297 aa8.96□□□□□ -0.98
HMGB3P18-201ENST00000406327 IFFO2Q5TF58 517 aa8.96□□□□□ -0.98
HMGB3P18-201ENST00000406327 KCNH8Q96L42 1107 aa8.96□□□□□ -0.98
HMGB3P18-201ENST00000406327 RBM27Q9P2N5 1060 aaKnown RBP8.96□□□□□ -0.98
HMGB3P18-201ENST00000406327 TMUB1Q9BVT8 246 aa8.95□□□□□ -0.98
HMGB3P18-201ENST00000406327 PTPN5P54829 565 aa8.94□□□□□ -0.98
HMGB3P18-201ENST00000406327 MDM2Q00987 491 aaPredicted RBP8.94□□□□□ -0.98
HMGB3P18-201ENST00000406327 TSR1Q2NL82 804 aaKnown RBP8.94□□□□□ -0.98
HMGB3P18-201ENST00000406327 FOSBP53539 338 aa8.93□□□□□ -0.98
HMGB3P18-201ENST00000406327 ZDHHC16Q969W1 377 aa8.93□□□□□ -0.98
HMGB3P18-201ENST00000406327 SSTR3P32745 418 aaPredicted RBP8.92□□□□□ -0.98
HMGB3P18-201ENST00000406327 METTL3Q86U44 580 aaKnown RBP8.92□□□□□ -0.98
HMGB3P18-201ENST00000406327 SKIV2LQ15477 1246 aaKnown RBP8.91□□□□□ -0.98
HMGB3P18-201ENST00000406327 DIXDC1Q155Q3 683 aa8.91□□□□□ -0.98
HMGB3P18-201ENST00000406327 KCNK17Q96T54 332 aa8.91□□□□□ -0.98
HMGB3P18-201ENST00000406327 C6orf132Q5T0Z8 1188 aa8.9□□□□□ -0.98
HMGB3P18-201ENST00000406327 ZNF454Q8N9F8 522 aa8.9□□□□□ -0.98
HMGB3P18-201ENST00000406327 REPIN1Q9BWE0 567 aaKnown RBP8.9□□□□□ -0.98
HMGB3P18-201ENST00000406327 VPS9D1Q9Y2B5 631 aa8.9□□□□□ -0.98
HMGB3P18-201ENST00000406327 A0A0G2JS52 829 aa8.89□□□□□ -0.99
HMGB3P18-201ENST00000406327 PADI6Q6TGC4 694 aa8.89□□□□□ -0.99
HMGB3P18-201ENST00000406327 RBM46Q8TBY0 533 aaKnown RBP8.89□□□□□ -0.99
HMGB3P18-201ENST00000406327 PXYLP1Q8TE99 480 aa8.89□□□□□ -0.99
HMGB3P18-201ENST00000406327 BEGAINQ9BUH8 593 aa8.89□□□□□ -0.99
HMGB3P18-201ENST00000406327 FAM217BQ9NTX9 383 aaPredicted RBP8.89□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms