RNA–Protein interactions for RNA: ENST00000404008.6

USP42-202, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 2

Gene USP42, Length 1,380 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-202ENST00000404008 MADDQ8WXG6 1647 aa44.2■■■■■ 4.67
USP42-202ENST00000404008 TRIM26Q12899 539 aaPredicted RBP44.18■■■■■ 4.66
USP42-202ENST00000404008 GGT6Q6P531 493 aa44.17■■■■■ 4.66
USP42-202ENST00000404008 PRDM15P57071 1507 aaPredicted RBP44.14■■■■■ 4.66
USP42-202ENST00000404008 KDM4FA0A1W2PPD8 638 aa44.12■■■■■ 4.65
USP42-202ENST00000404008 UNC13BO14795 1591 aa44.11■■■■■ 4.65
USP42-202ENST00000404008 RIMS1Q86UR5 1692 aaKnown RBP44.1■■■■■ 4.65
USP42-202ENST00000404008 FAM135AQ9P2D6 1515 aa44.08■■■■■ 4.65
USP42-202ENST00000404008 CLTCQ00610 1675 aaKnown RBP44.07■■■■■ 4.65
USP42-202ENST00000404008 PPP6R1Q9UPN7 881 aa44.06■■■■■ 4.64
USP42-202ENST00000404008 ZC3H13Q5T200 1668 aaKnown RBP44.05■■■■■ 4.64
USP42-202ENST00000404008 KDM5DQ9BY66 1539 aa44.05■■■■■ 4.64
USP42-202ENST00000404008 MROH2AA6NES4 1674 aa44.02■■■■■ 4.64
USP42-202ENST00000404008 SETD5Q9C0A6 1442 aa44.01■■■■■ 4.64
USP42-202ENST00000404008 VWDEQ8N2E2 1590 aa44.01■■■■■ 4.64
USP42-202ENST00000404008 CEP152O94986 1710 aa44.01■■■■■ 4.64
USP42-202ENST00000404008 CNTLNQ9NXG0 1405 aa44.01■■■■■ 4.64
USP42-202ENST00000404008 ABCC3O15438 1527 aa43.99■■■■■ 4.63
USP42-202ENST00000404008 GRWD1Q9BQ67 446 aaKnown RBP eCLIP43.97■■■■■ 4.63
USP42-202ENST00000404008 ESF1Q9H501 851 aaKnown RBP43.97■■■■■ 4.63
USP42-202ENST00000404008 KANK1Q14678 1352 aa43.95■■■■■ 4.63
USP42-202ENST00000404008 WASHC2CQ9Y4E1 1318 aa43.94■■■■■ 4.63
USP42-202ENST00000404008 IQGAP3Q86VI3 1631 aa43.92■■■■■ 4.62
USP42-202ENST00000404008 PTPRMP28827 1452 aa43.92■■■■■ 4.62
USP42-202ENST00000404008 C3P01024 1663 aa43.91■■■■■ 4.62
USP42-202ENST00000404008 CAMSAP1Q5T5Y3 1602 aa43.9■■■■■ 4.62
USP42-202ENST00000404008 LMTK2Q8IWU2 1503 aa43.9■■■■■ 4.62
USP42-202ENST00000404008 RAB3GAP2Q9H2M9 1393 aa43.89■■■■■ 4.62
USP42-202ENST00000404008 NUP155O75694 1391 aa43.85■■■■■ 4.61
USP42-202ENST00000404008 ZMYM3Q14202 1370 aa43.83■■■■■ 4.61
USP42-202ENST00000404008 TET3O43151 1660 aa43.82■■■■■ 4.61
USP42-202ENST00000404008 EFCAB6Q5THR3 1501 aa43.78■■■■■ 4.6
USP42-202ENST00000404008 PZPP20742 1482 aa43.74■■■■■ 4.59
USP42-202ENST00000404008 ACIN1Q9UKV3 1341 aaKnown RBP43.74■■■■■ 4.59
USP42-202ENST00000404008 TRIM52Q96A61 297 aa43.74■■■■■ 4.59
USP42-202ENST00000404008 ARHGAP31Q2M1Z3 1444 aa43.72■■■■■ 4.59
USP42-202ENST00000404008 CEBPAP49715 358 aaPredicted RBP43.72■■■■■ 4.59
USP42-202ENST00000404008 HRCP23327 699 aa43.71■■■■■ 4.59
USP42-202ENST00000404008 E9PCH4 1651 aa43.68■■■■■ 4.58
USP42-202ENST00000404008 PLPPR3Q6T4P5 718 aa43.67■■■■■ 4.58
USP42-202ENST00000404008 NPATQ14207 1427 aa43.67■■■■■ 4.58
USP42-202ENST00000404008 PREX1Q8TCU6 1659 aa43.64■■■■■ 4.58
USP42-202ENST00000404008 PCGF6Q9BYE7 350 aa43.64■■■■■ 4.58
USP42-202ENST00000404008 CFAP65Q6ZU64 1925 aaKnown RBP43.64■■■■■ 4.58
USP42-202ENST00000404008 RPRD2Q5VT52 1461 aaKnown RBP43.62■■■■■ 4.57
USP42-202ENST00000404008 SPATA31D1Q6ZQQ2 1576 aa43.58■■■■■ 4.57
USP42-202ENST00000404008 FBXO31Q5XUX0 539 aaPredicted RBP43.57■■■■■ 4.57
USP42-202ENST00000404008 ERVK-7P63135 1459 aa43.57■■■■■ 4.57
USP42-202ENST00000404008 SLC4A1APQ9BWU0 796 aaKnown RBP43.55■■■■■ 4.56
USP42-202ENST00000404008 SETD1BQ9UPS6 1966 aaKnown RBP43.53■■■■■ 4.56
USP42-202ENST00000404008 MPHOSPH9Q99550 1183 aa43.51■■■■■ 4.56
USP42-202ENST00000404008 PKD2Q13563 968 aa43.47■■■■■ 4.55
USP42-202ENST00000404008 SPHKAPQ2M3C7 1700 aa43.47■■■■■ 4.55
USP42-202ENST00000404008 NOS1P29475 1434 aa43.47■■■■■ 4.55
USP42-202ENST00000404008 MYO3AQ8NEV4 1616 aa43.46■■■■■ 4.55
USP42-202ENST00000404008 TNRQ92752 1358 aa43.46■■■■■ 4.55
USP42-202ENST00000404008 SYNMO15061 1565 aa43.46■■■■■ 4.55
USP42-202ENST00000404008 AEBP2Q6ZN18 517 aaPredicted RBP43.42■■■■■ 4.54
USP42-202ENST00000404008 PTPRTO14522 1441 aa43.37■■■■■ 4.53
USP42-202ENST00000404008 ZNF142P52746 1687 aaPredicted RBP43.36■■■■■ 4.53
USP42-202ENST00000404008 UHRF1BP1Q6BDS2 1440 aa43.34■■■■■ 4.53
USP42-202ENST00000404008 NLRP1Q9C000 1473 aa43.34■■■■■ 4.53
USP42-202ENST00000404008 PIK3C2BO00750 1634 aa43.33■■■■■ 4.53
USP42-202ENST00000404008 FOXD1Q16676 465 aa43.32■■■■■ 4.53
USP42-202ENST00000404008 TRPM2O94759 1503 aa43.32■■■■■ 4.53
USP42-202ENST00000404008 CEP170BQ9Y4F5 1589 aaPredicted RBP43.31■■■■■ 4.52
USP42-202ENST00000404008 PLA2R1Q13018 1463 aa43.29■■■■■ 4.52
USP42-202ENST00000404008 LMTK3Q96Q04 1460 aa43.28■■■■■ 4.52
USP42-202ENST00000404008 UGGT1Q9NYU2 1555 aa43.27■■■■■ 4.52
USP42-202ENST00000404008 A2ML1A8K2U0 1454 aa43.26■■■■■ 4.52
USP42-202ENST00000404008 SLC52A1Q9NWF4 448 aa43.22■■■■■ 4.51
USP42-202ENST00000404008 CLTCL1P53675 1640 aa43.22■■■■■ 4.51
USP42-202ENST00000404008 UBR1Q8IWV7 1749 aa43.21■■■■■ 4.51
USP42-202ENST00000404008 KDM5AP29375 1690 aaKnown RBP43.2■■■■■ 4.51
USP42-202ENST00000404008 IDI1Q13907 227 aa43.19■■■■■ 4.5
USP42-202ENST00000404008 DHX57Q6P158 1386 aaKnown RBP43.17■■■■■ 4.5
USP42-202ENST00000404008 ADGRB3O60242 1522 aa43.14■■■■■ 4.5
USP42-202ENST00000404008 ANKRD30BQ9BXX2 1392 aa43.12■■■■■ 4.49
USP42-202ENST00000404008 TMEM131LA2VDJ0 1609 aa43.11■■■■■ 4.49
USP42-202ENST00000404008 MYO5BQ9ULV0 1848 aa43.11■■■■■ 4.49
USP42-202ENST00000404008 KIF1BO60333 1816 aa43.1■■■■■ 4.49
USP42-202ENST00000404008 CCDC144AA2RUR9 1427 aa43.08■■■■■ 4.49
USP42-202ENST00000404008 HSPA2P54652 639 aa43.01■■■■■ 4.48
USP42-202ENST00000404008 STAG3Q9UJ98 1225 aa43.01■■■■■ 4.48
USP42-202ENST00000404008 THEMISQ8N1K5 641 aaPredicted RBP43■■■■■ 4.47
USP42-202ENST00000404008 CHGAP10645 457 aaKnown RBP42.94■■■■■ 4.46
USP42-202ENST00000404008 SLIT1O75093 1534 aa42.93■■■■■ 4.46
USP42-202ENST00000404008 ARHGAP23Q9P227 1491 aa42.91■■■■■ 4.46
USP42-202ENST00000404008 NEURL4Q96JN8 1562 aa42.91■■■■■ 4.46
USP42-202ENST00000404008 POLR1AO95602 1720 aaPredicted RBP42.89■■■■■ 4.46
USP42-202ENST00000404008 TMEM2Q9UHN6 1383 aa42.89■■■■■ 4.46
USP42-202ENST00000404008 STRCQ7RTU9 1775 aa42.88■■■■■ 4.46
USP42-202ENST00000404008 SPATA31E1Q6ZUB1 1445 aa42.88■■■■■ 4.45
USP42-202ENST00000404008 ZFYVE9O95405 1425 aa42.82■■■■■ 4.45
USP42-202ENST00000404008 RIMS2Q9UQ26 1411 aa42.79■■■■■ 4.44
USP42-202ENST00000404008 NEXMIFQ5QGS0 1516 aa42.78■■■■■ 4.44
USP42-202ENST00000404008 ZNF326Q5BKZ1 582 aaKnown RBP42.78■■■■■ 4.44
USP42-202ENST00000404008 SCAF11Q99590 1463 aaKnown RBP42.76■■■■■ 4.44
USP42-202ENST00000404008 PPLO60437 1756 aa42.76■■■■■ 4.44
USP42-202ENST00000404008 IFT172Q9UG01 1749 aa42.76■■■■■ 4.44
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms