RNA–Protein interactions for RNA: ENST00000401473.7

HMGA1-204, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,887 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-204ENST00000401473 EIF2AK4Q9P2K8 1649 aaKnown RBP23.9■■□□□ 1.42
HMGA1-204ENST00000401473 MADDQ8WXG6 1647 aa23.89■■□□□ 1.41
HMGA1-204ENST00000401473 GRWD1Q9BQ67 446 aaKnown RBP eCLIP23.87■■□□□ 1.412e-6■■□□□ 14.5
HMGA1-204ENST00000401473 RAB3GAP2Q9H2M9 1393 aa23.85■■□□□ 1.41
HMGA1-204ENST00000401473 MROH1Q8NDA8 1641 aa23.85■■□□□ 1.41
HMGA1-204ENST00000401473 RNF17Q9BXT8 1623 aaKnown RBP23.84■■□□□ 1.41
HMGA1-204ENST00000401473 DEPDC5O75140 1603 aa23.83■■□□□ 1.4
HMGA1-204ENST00000401473 PPP6R1Q9UPN7 881 aa23.81■■□□□ 1.4
HMGA1-204ENST00000401473 FER1L4A9Z1Z3 1794 aa23.81■■□□□ 1.4
HMGA1-204ENST00000401473 WASHC2CQ9Y4E1 1318 aa23.8■■□□□ 1.4
HMGA1-204ENST00000401473 PTPRMP28827 1452 aa23.8■■□□□ 1.4
HMGA1-204ENST00000401473 RIMS1Q86UR5 1692 aaKnown RBP23.79■■□□□ 1.4
HMGA1-204ENST00000401473 PRDM15P57071 1507 aaPredicted RBP23.79■■□□□ 1.4
HMGA1-204ENST00000401473 CEBPAP49715 358 aaPredicted RBP23.79■■□□□ 1.4
HMGA1-204ENST00000401473 ESF1Q9H501 851 aaKnown RBP23.79■■□□□ 1.4
HMGA1-204ENST00000401473 NUP155O75694 1391 aa23.78■■□□□ 1.4
HMGA1-204ENST00000401473 TRIM52Q96A61 297 aa23.77■■□□□ 1.4
HMGA1-204ENST00000401473 UNC13BO14795 1591 aa23.77■■□□□ 1.4
HMGA1-204ENST00000401473 HRCP23327 699 aa23.77■■□□□ 1.4
HMGA1-204ENST00000401473 PLPPR3Q6T4P5 718 aa23.76■■□□□ 1.39
HMGA1-204ENST00000401473 VWDEQ8N2E2 1590 aa23.75■■□□□ 1.39
HMGA1-204ENST00000401473 CNTLNQ9NXG0 1405 aa23.75■■□□□ 1.39
HMGA1-204ENST00000401473 ZMYM3Q14202 1370 aa23.75■■□□□ 1.39
HMGA1-204ENST00000401473 CLTCQ00610 1675 aaKnown RBP23.74■■□□□ 1.39
HMGA1-204ENST00000401473 KDM5DQ9BY66 1539 aa23.74■■□□□ 1.39
HMGA1-204ENST00000401473 ABCC3O15438 1527 aa23.74■■□□□ 1.39
HMGA1-204ENST00000401473 KANK1Q14678 1352 aa23.73■■□□□ 1.39
HMGA1-204ENST00000401473 CEP152O94986 1710 aa23.72■■□□□ 1.39
HMGA1-204ENST00000401473 FAM135AQ9P2D6 1515 aa23.69■■□□□ 1.38
HMGA1-204ENST00000401473 CFAP65Q6ZU64 1925 aaKnown RBP23.69■■□□□ 1.38
HMGA1-204ENST00000401473 IQGAP3Q86VI3 1631 aa23.68■■□□□ 1.38
HMGA1-204ENST00000401473 PZPP20742 1482 aa23.68■■□□□ 1.38
HMGA1-204ENST00000401473 C3P01024 1663 aa23.68■■□□□ 1.38
HMGA1-204ENST00000401473 LMTK2Q8IWU2 1503 aa23.67■■□□□ 1.38
HMGA1-204ENST00000401473 MROH2AA6NES4 1674 aa23.67■■□□□ 1.38
HMGA1-204ENST00000401473 FBXO31Q5XUX0 539 aaPredicted RBP23.66■■□□□ 1.38
HMGA1-204ENST00000401473 MPHOSPH9Q99550 1183 aa23.66■■□□□ 1.38
HMGA1-204ENST00000401473 SLC4A1APQ9BWU0 796 aaKnown RBP23.66■■□□□ 1.38
HMGA1-204ENST00000401473 ZC3H13Q5T200 1668 aaKnown RBP23.66■■□□□ 1.38
HMGA1-204ENST00000401473 AEBP2Q6ZN18 517 aaPredicted RBP23.65■■□□□ 1.38
HMGA1-204ENST00000401473 ACIN1Q9UKV3 1341 aaKnown RBP23.65■■□□□ 1.38
HMGA1-204ENST00000401473 CAMSAP1Q5T5Y3 1602 aa23.63■■□□□ 1.37
HMGA1-204ENST00000401473 NPATQ14207 1427 aa23.63■■□□□ 1.37
HMGA1-204ENST00000401473 PKD2Q13563 968 aa23.62■■□□□ 1.37
HMGA1-204ENST00000401473 TET3O43151 1660 aa23.61■■□□□ 1.37
HMGA1-204ENST00000401473 ARHGAP31Q2M1Z3 1444 aa23.61■■□□□ 1.37
HMGA1-204ENST00000401473 FOXD1Q16676 465 aa23.61■■□□□ 1.37
HMGA1-204ENST00000401473 EFCAB6Q5THR3 1501 aa23.6■■□□□ 1.37
HMGA1-204ENST00000401473 E9PCH4 1651 aa23.59■■□□□ 1.37
HMGA1-204ENST00000401473 SETD1BQ9UPS6 1966 aaKnown RBP23.53■■□□□ 1.36
HMGA1-204ENST00000401473 ERVK-7P63135 1459 aa23.53■■□□□ 1.36
HMGA1-204ENST00000401473 RPRD2Q5VT52 1461 aaKnown RBP23.53■■□□□ 1.36
HMGA1-204ENST00000401473 TNRQ92752 1358 aa23.51■■□□□ 1.35
HMGA1-204ENST00000401473 SPATA31D1Q6ZQQ2 1576 aa23.51■■□□□ 1.35
HMGA1-204ENST00000401473 PREX1Q8TCU6 1659 aa23.5■■□□□ 1.35
HMGA1-204ENST00000401473 NOS1P29475 1434 aa23.5■■□□□ 1.35
HMGA1-204ENST00000401473 PLA2R1Q13018 1463 aa23.49■■□□□ 1.35
HMGA1-204ENST00000401473 DHX57Q6P158 1386 aaKnown RBP23.49■■□□□ 1.35
HMGA1-204ENST00000401473 PTPRTO14522 1441 aa23.47■■□□□ 1.35
HMGA1-204ENST00000401473 LMTK3Q96Q04 1460 aa23.47■■□□□ 1.35
HMGA1-204ENST00000401473 SYNMO15061 1565 aa23.45■■□□□ 1.34
HMGA1-204ENST00000401473 IDI1Q13907 227 aa23.45■■□□□ 1.34
HMGA1-204ENST00000401473 UHRF1BP1Q6BDS2 1440 aa23.44■■□□□ 1.34
HMGA1-204ENST00000401473 SPHKAPQ2M3C7 1700 aa23.43■■□□□ 1.34
HMGA1-204ENST00000401473 ANKRD30BQ9BXX2 1392 aa23.42■■□□□ 1.34
HMGA1-204ENST00000401473 MYO3AQ8NEV4 1616 aa23.42■■□□□ 1.34
HMGA1-204ENST00000401473 HSPA2P54652 639 aa23.42■■□□□ 1.34
HMGA1-204ENST00000401473 UGGT1Q9NYU2 1555 aa23.42■■□□□ 1.34
HMGA1-204ENST00000401473 SLC52A1Q9NWF4 448 aa23.41■■□□□ 1.34
HMGA1-204ENST00000401473 NLRP1Q9C000 1473 aa23.39■■□□□ 1.33
HMGA1-204ENST00000401473 TRPM2O94759 1503 aa23.38■■□□□ 1.33
HMGA1-204ENST00000401473 CEP170BQ9Y4F5 1589 aaPredicted RBP23.37■■□□□ 1.33
HMGA1-204ENST00000401473 A2ML1A8K2U0 1454 aa23.37■■□□□ 1.33
HMGA1-204ENST00000401473 PIK3C2BO00750 1634 aa23.36■■□□□ 1.33
HMGA1-204ENST00000401473 ZNF142P52746 1687 aaPredicted RBP23.34■■□□□ 1.33
HMGA1-204ENST00000401473 CLTCL1P53675 1640 aa23.34■■□□□ 1.33
HMGA1-204ENST00000401473 SIN3AQ96ST3 1273 aa23.32■■□□□ 1.32
HMGA1-204ENST00000401473 CCDC144AA2RUR9 1427 aa23.32■■□□□ 1.32
HMGA1-204ENST00000401473 CHGAP10645 457 aaKnown RBP23.3■■□□□ 1.32
HMGA1-204ENST00000401473 THEMISQ8N1K5 641 aaPredicted RBP23.28■■□□□ 1.32
HMGA1-204ENST00000401473 CCER1Q8TC90 406 aaPredicted RBP23.28■■□□□ 1.32
HMGA1-204ENST00000401473 STAG3Q9UJ98 1225 aa23.28■■□□□ 1.32
HMGA1-204ENST00000401473 MYO5BQ9ULV0 1848 aa23.27■■□□□ 1.32
HMGA1-204ENST00000401473 UBR1Q8IWV7 1749 aa23.27■■□□□ 1.32
HMGA1-204ENST00000401473 TMEM131LA2VDJ0 1609 aa23.26■■□□□ 1.31
HMGA1-204ENST00000401473 KIF1BO60333 1816 aa23.25■■□□□ 1.31
HMGA1-204ENST00000401473 NEUROD1Q13562 356 aa23.24■■□□□ 1.31
HMGA1-204ENST00000401473 RGL3Q3MIN7 710 aa23.24■■□□□ 1.31
HMGA1-204ENST00000401473 ADGRB3O60242 1522 aa23.23■■□□□ 1.31
HMGA1-204ENST00000401473 SPATA31E1Q6ZUB1 1445 aa23.23■■□□□ 1.31
HMGA1-204ENST00000401473 KDM5AP29375 1690 aaKnown RBP23.21■■□□□ 1.31
HMGA1-204ENST00000401473 NCKAP5LQ9HCH0 1330 aa23.21■■□□□ 1.31
HMGA1-204ENST00000401473 TMEM2Q9UHN6 1383 aa23.2■■□□□ 1.31
HMGA1-204ENST00000401473 LTKP29376 864 aa23.19■■□□□ 1.3
HMGA1-204ENST00000401473 ZNF326Q5BKZ1 582 aaKnown RBP23.19■■□□□ 1.3
HMGA1-204ENST00000401473 CLSPNQ9HAW4 1339 aa23.19■■□□□ 1.3
HMGA1-204ENST00000401473 STRCQ7RTU9 1775 aa23.19■■□□□ 1.3
HMGA1-204ENST00000401473 ARHGAP23Q9P227 1491 aa23.18■■□□□ 1.3
HMGA1-204ENST00000401473 SLIT1O75093 1534 aa23.18■■□□□ 1.3
HMGA1-204ENST00000401473 NUTM2DQ5VT03 806 aaPredicted RBP23.17■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms