RNA–Protein interactions for RNA: ENST00000399523.5

UFD1-202, Transcript of ubiquitin recognition factor in ER associated degradation 1, humanhuman

TSL 1 (best) BASIC

Gene UFD1, Length 1,007 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UFD1-202ENST00000399523 TNRQ92752 1358 aa29.47■■■□□ 2.31
UFD1-202ENST00000399523 RTEL1-TNFRSF6BF6WH68 1400 aa29.46■■■□□ 2.31
UFD1-202ENST00000399523 DHX29Q7Z478 1369 aaKnown RBP29.46■■■□□ 2.31
UFD1-202ENST00000399523 MBD5Q9P267 1494 aa29.46■■■□□ 2.31
UFD1-202ENST00000399523 FBXO31Q5XUX0 539 aaPredicted RBP29.45■■■□□ 2.31
UFD1-202ENST00000399523 ZNF644Q9H582 1327 aaPredicted RBP29.45■■■□□ 2.3
UFD1-202ENST00000399523 ANKLE2Q86XL3 938 aa29.43■■■□□ 2.3
UFD1-202ENST00000399523 PZPP20742 1482 aa29.42■■■□□ 2.3
UFD1-202ENST00000399523 VWDEQ8N2E2 1590 aa29.42■■■□□ 2.3
UFD1-202ENST00000399523 MTUS2Q5JR59 1369 aa29.4■■■□□ 2.3
UFD1-202ENST00000399523 ALKQ9UM73 1620 aa29.4■■■□□ 2.3
UFD1-202ENST00000399523 FAM135AQ9P2D6 1515 aa29.4■■■□□ 2.3
UFD1-202ENST00000399523 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP29.39■■■□□ 2.292e-7■□□□□ 9.2
UFD1-202ENST00000399523 THEMISQ8N1K5 641 aaPredicted RBP29.38■■■□□ 2.29
UFD1-202ENST00000399523 MED14O60244 1454 aa29.37■■■□□ 2.29
UFD1-202ENST00000399523 KIF3BO15066 747 aa29.37■■■□□ 2.29
UFD1-202ENST00000399523 PHF23Q9BUL5 403 aaPredicted RBP29.37■■■□□ 2.29
UFD1-202ENST00000399523 TIAM1Q13009 1591 aa29.37■■■□□ 2.29
UFD1-202ENST00000399523 KDM5DQ9BY66 1539 aa29.36■■■□□ 2.29
UFD1-202ENST00000399523 MIA2Q96PC5 1412 aa29.35■■■□□ 2.29
UFD1-202ENST00000399523 DEPDC5O75140 1603 aa29.34■■■□□ 2.29
UFD1-202ENST00000399523 NPHP4O75161 1426 aaPredicted RBP29.34■■■□□ 2.29
UFD1-202ENST00000399523 NLRP1Q9C000 1473 aa29.34■■■□□ 2.29
UFD1-202ENST00000399523 WASHC2CQ9Y4E1 1318 aa29.32■■■□□ 2.28
UFD1-202ENST00000399523 UGGT1Q9NYU2 1555 aa29.3■■■□□ 2.28
UFD1-202ENST00000399523 CEP162Q5TB80 1403 aa29.26■■■□□ 2.27
UFD1-202ENST00000399523 EHBP1L1Q8N3D4 1523 aa29.25■■■□□ 2.27
UFD1-202ENST00000399523 IQGAP1P46940 1657 aa29.25■■■□□ 2.27
UFD1-202ENST00000399523 CCDC141Q6ZP82 1450 aa29.25■■■□□ 2.27
UFD1-202ENST00000399523 RSPH4AQ5TD94 716 aa29.24■■■□□ 2.27
UFD1-202ENST00000399523 LRRC7Q96NW7 1537 aa29.24■■■□□ 2.27
UFD1-202ENST00000399523 STRCP1A6NGW2 1772 aa29.24■■■□□ 2.27
UFD1-202ENST00000399523 RNF17Q9BXT8 1623 aaKnown RBP29.18■■■□□ 2.26
UFD1-202ENST00000399523 SYNMO15061 1565 aa29.17■■■□□ 2.26
UFD1-202ENST00000399523 CAMSAP2Q08AD1 1489 aa29.16■■■□□ 2.26
UFD1-202ENST00000399523 SENP3Q9H4L4 574 aaPredicted RBP29.14■■■□□ 2.26
UFD1-202ENST00000399523 RGS17Q9UGC6 210 aaPredicted RBP29.14■■■□□ 2.26
UFD1-202ENST00000399523 ZC3H13Q5T200 1668 aaKnown RBP29.1■■■□□ 2.25
UFD1-202ENST00000399523 ABCC3O15438 1527 aa29.1■■■□□ 2.25
UFD1-202ENST00000399523 ARHGEF5Q12774 1597 aa29.09■■■□□ 2.25
UFD1-202ENST00000399523 TSPY4P0CV99 314 aa29.09■■■□□ 2.25
UFD1-202ENST00000399523 TSPY10P0CW01 314 aa29.09■■■□□ 2.25
UFD1-202ENST00000399523 NCOA2Q15596 1464 aa29.09■■■□□ 2.25
UFD1-202ENST00000399523 ERVK-7P63135 1459 aa29.07■■■□□ 2.24
UFD1-202ENST00000399523 SCAF11Q99590 1463 aaKnown RBP29.03■■■□□ 2.24
UFD1-202ENST00000399523 UBR1Q8IWV7 1749 aa29.03■■■□□ 2.24
UFD1-202ENST00000399523 XIRP1Q702N8 1843 aaKnown RBP28.99■■■□□ 2.23
UFD1-202ENST00000399523 CFAP65Q6ZU64 1925 aaKnown RBP28.99■■■□□ 2.23
UFD1-202ENST00000399523 LTKP29376 864 aa28.99■■■□□ 2.23
UFD1-202ENST00000399523 EIF2AK4Q9P2K8 1649 aaKnown RBP28.98■■■□□ 2.23
UFD1-202ENST00000399523 ARHGAP23Q9P227 1491 aa28.98■■■□□ 2.23
UFD1-202ENST00000399523 MAST1Q9Y2H9 1570 aa28.97■■■□□ 2.23
UFD1-202ENST00000399523 SLIT1O75093 1534 aa28.97■■■□□ 2.23
UFD1-202ENST00000399523 MROH1Q8NDA8 1641 aa28.97■■■□□ 2.23
UFD1-202ENST00000399523 FAM135BQ49AJ0 1406 aa28.96■■■□□ 2.23
UFD1-202ENST00000399523 TXNDC2Q86VQ3 553 aa28.96■■■□□ 2.23
UFD1-202ENST00000399523 CEP152O94986 1710 aa28.91■■■□□ 2.22
UFD1-202ENST00000399523 POTEAQ6S8J7 498 aa28.91■■■□□ 2.22
UFD1-202ENST00000399523 ARHGAP31Q2M1Z3 1444 aa28.88■■■□□ 2.21
UFD1-202ENST00000399523 EID1Q9Y6B2 187 aa28.88■■■□□ 2.21
UFD1-202ENST00000399523 TMEM94Q12767 1356 aa28.83■■■□□ 2.21
UFD1-202ENST00000399523 TMEM2Q9UHN6 1383 aa28.83■■■□□ 2.21
UFD1-202ENST00000399523 DUOX2Q9NRD8 1548 aa28.83■■■□□ 2.21
UFD1-202ENST00000399523 KCNA6P17658 529 aa28.79■■■□□ 2.2
UFD1-202ENST00000399523 PRDM15P57071 1507 aaPredicted RBP28.79■■■□□ 2.2
UFD1-202ENST00000399523 LRRC9Q6ZRR7 1453 aa28.78■■■□□ 2.2
UFD1-202ENST00000399523 ROBO1Q9Y6N7 1651 aa28.78■■■□□ 2.2
UFD1-202ENST00000399523 PIK3C2BO00750 1634 aa28.78■■■□□ 2.2
UFD1-202ENST00000399523 MAP3K1Q13233 1512 aa28.75■■■□□ 2.19
UFD1-202ENST00000399523 MYOM3Q5VTT5 1437 aa28.74■■■□□ 2.19
UFD1-202ENST00000399523 KDM5AP29375 1690 aaKnown RBP28.74■■■□□ 2.19
UFD1-202ENST00000399523 PROSER2Q86WR7 435 aaPredicted RBP28.73■■■□□ 2.19
UFD1-202ENST00000399523 TET3O43151 1660 aa28.73■■■□□ 2.19
UFD1-202ENST00000399523 STAG3Q9UJ98 1225 aa28.72■■■□□ 2.19
UFD1-202ENST00000399523 ERBINQ96RT1 1412 aa28.71■■■□□ 2.19
UFD1-202ENST00000399523 KIF15Q9NS87 1388 aa28.71■■■□□ 2.19
UFD1-202ENST00000399523 EFCAB6Q5THR3 1501 aa28.7■■■□□ 2.19
UFD1-202ENST00000399523 IDI1Q13907 227 aa28.69■■■□□ 2.18
UFD1-202ENST00000399523 SLC26A8Q96RN1 970 aa28.69■■■□□ 2.18
UFD1-202ENST00000399523 RBM33Q96EV2 1170 aaKnown RBP28.68■■■□□ 2.18
UFD1-202ENST00000399523 NKTRP30414 1462 aaKnown RBP28.66■■■□□ 2.18
UFD1-202ENST00000399523 GRWD1Q9BQ67 446 aaKnown RBP eCLIP28.65■■■□□ 2.181e-6■■□□□ 11.7
UFD1-202ENST00000399523 SETD1AO15047 1707 aaKnown RBP28.65■■■□□ 2.18
UFD1-202ENST00000399523 NWD1Q149M9 1564 aa28.64■■■□□ 2.18
UFD1-202ENST00000399523 KANK4Q5T7N3 995 aaPredicted RBP28.64■■■□□ 2.18
UFD1-202ENST00000399523 RRP7BPQ9NSQ0 103 aa28.64■■■□□ 2.18
UFD1-202ENST00000399523 SLAIN2Q9P270 581 aa28.64■■■□□ 2.18
UFD1-202ENST00000399523 JCADQ9P266 1359 aa28.63■■■□□ 2.17
UFD1-202ENST00000399523 MSH6P52701 1360 aa28.62■■■□□ 2.17
UFD1-202ENST00000399523 KANK1Q14678 1352 aa28.62■■■□□ 2.17
UFD1-202ENST00000399523 ABCC5O15440 1437 aa28.61■■■□□ 2.17
UFD1-202ENST00000399523 VPS8Q8N3P4 1428 aa28.61■■■□□ 2.17
UFD1-202ENST00000399523 PHLPP1O60346 1717 aa28.61■■■□□ 2.17
UFD1-202ENST00000399523 LMTK2Q8IWU2 1503 aa28.61■■■□□ 2.17
UFD1-202ENST00000399523 CROCC2H7BZ55 1655 aa28.59■■■□□ 2.17
UFD1-202ENST00000399523 NOS1P29475 1434 aa28.57■■■□□ 2.16
UFD1-202ENST00000399523 ADGRB3O60242 1522 aa28.55■■■□□ 2.16
UFD1-202ENST00000399523 SLC52A1Q9NWF4 448 aa28.53■■■□□ 2.16
UFD1-202ENST00000399523 COL16A1Q07092 1604 aaPredicted RBP28.53■■■□□ 2.16
UFD1-202ENST00000399523 UPF1Q92900 1129 aaKnown RBP eCLIP28.51■■■□□ 2.15
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms