RNA–Protein interactions for RNA: ENST00000377575.2

HMGN4-201, Transcript of high mobility group nucleosomal binding domain 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGN4, Length 1,225 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4-201ENST00000377575 ABCC5O15440 1437 aa26.12■■□□□ 1.77
HMGN4-201ENST00000377575 DAPK1P53355 1430 aa26.12■■□□□ 1.77
HMGN4-201ENST00000377575 DUOX2Q9NRD8 1548 aa26.11■■□□□ 1.77
HMGN4-201ENST00000377575 ZC3H13Q5T200 1668 aaKnown RBP26.09■■□□□ 1.77
HMGN4-201ENST00000377575 MYO3AQ8NEV4 1616 aa26.08■■□□□ 1.77
HMGN4-201ENST00000377575 ZNF142P52746 1687 aaPredicted RBP26.06■■□□□ 1.76
HMGN4-201ENST00000377575 PTPRKQ15262 1439 aa26.05■■□□□ 1.76
HMGN4-201ENST00000377575 KIF15Q9NS87 1388 aa26.05■■□□□ 1.76
HMGN4-201ENST00000377575 ERBINQ96RT1 1412 aa26.03■■□□□ 1.76
HMGN4-201ENST00000377575 STRCQ7RTU9 1775 aa26.02■■□□□ 1.76
HMGN4-201ENST00000377575 PZPP20742 1482 aa26.01■■□□□ 1.75
HMGN4-201ENST00000377575 MROH1Q8NDA8 1641 aa26.01■■□□□ 1.75
HMGN4-201ENST00000377575 SENP3Q9H4L4 574 aaPredicted RBP26.01■■□□□ 1.75
HMGN4-201ENST00000377575 WASHC2CQ9Y4E1 1318 aa26.01■■□□□ 1.75
HMGN4-201ENST00000377575 CEP170BQ9Y4F5 1589 aaPredicted RBP25.99■■□□□ 1.75
HMGN4-201ENST00000377575 ANKRD30AQ9BXX3 1397 aa25.99■■□□□ 1.75
HMGN4-201ENST00000377575 ABCC3O15438 1527 aa25.98■■□□□ 1.75
HMGN4-201ENST00000377575 CEP152O94986 1710 aa25.98■■□□□ 1.75
HMGN4-201ENST00000377575 FAM50AQ14320 339 aaKnown RBP25.98■■□□□ 1.75
HMGN4-201ENST00000377575 PRDM15P57071 1507 aaPredicted RBP25.97■■□□□ 1.75
HMGN4-201ENST00000377575 DEPDC5O75140 1603 aa25.96■■□□□ 1.75
HMGN4-201ENST00000377575 ADGRL2O95490 1459 aa25.96■■□□□ 1.75
HMGN4-201ENST00000377575 PHF23Q9BUL5 403 aaPredicted RBP25.95■■□□□ 1.74
HMGN4-201ENST00000377575 RRP7BPQ9NSQ0 103 aa25.95■■□□□ 1.74
HMGN4-201ENST00000377575 CAMSAP1Q5T5Y3 1602 aa25.95■■□□□ 1.74
HMGN4-201ENST00000377575 NCOA1Q15788 1441 aa25.92■■□□□ 1.74
HMGN4-201ENST00000377575 CHIC2Q9UKJ5 165 aa25.92■■□□□ 1.74
HMGN4-201ENST00000377575 DMRT2Q9Y5R5 561 aa25.91■■□□□ 1.74
HMGN4-201ENST00000377575 TNRQ92752 1358 aa25.9■■□□□ 1.74
HMGN4-201ENST00000377575 A2ML1A8K2U0 1454 aa25.9■■□□□ 1.74
HMGN4-201ENST00000377575 PLA2R1Q13018 1463 aa25.87■■□□□ 1.73
HMGN4-201ENST00000377575 SPATA31D1Q6ZQQ2 1576 aa25.86■■□□□ 1.73
HMGN4-201ENST00000377575 FBXO31Q5XUX0 539 aaPredicted RBP25.85■■□□□ 1.73
HMGN4-201ENST00000377575 PTPRTO14522 1441 aa25.85■■□□□ 1.73
HMGN4-201ENST00000377575 NLRP1Q9C000 1473 aa25.85■■□□□ 1.73
HMGN4-201ENST00000377575 KANK1Q14678 1352 aa25.84■■□□□ 1.73
HMGN4-201ENST00000377575 PPARGC1BQ86YN6 1023 aaKnown RBP25.83■■□□□ 1.73
HMGN4-201ENST00000377575 ERVK-7P63135 1459 aa25.82■■□□□ 1.72
HMGN4-201ENST00000377575 CFAP65Q6ZU64 1925 aaKnown RBP25.82■■□□□ 1.72
HMGN4-201ENST00000377575 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP25.82■■□□□ 1.725e-7■■■■■ 29.7
HMGN4-201ENST00000377575 VWDEQ8N2E2 1590 aa25.81■■□□□ 1.72
HMGN4-201ENST00000377575 POLR1AO95602 1720 aaPredicted RBP25.8■■□□□ 1.72
HMGN4-201ENST00000377575 ARHGAP31Q2M1Z3 1444 aa25.8■■□□□ 1.72
HMGN4-201ENST00000377575 ANKRD50Q9ULJ7 1429 aa25.8■■□□□ 1.72
HMGN4-201ENST00000377575 LMTK2Q8IWU2 1503 aa25.78■■□□□ 1.72
HMGN4-201ENST00000377575 GRWD1Q9BQ67 446 aaKnown RBP eCLIP25.78■■□□□ 1.72
HMGN4-201ENST00000377575 ROCK1Q13464 1354 aa25.78■■□□□ 1.72
HMGN4-201ENST00000377575 UGGT1Q9NYU2 1555 aa25.77■■□□□ 1.72
HMGN4-201ENST00000377575 PKD2Q13563 968 aa25.76■■□□□ 1.71
HMGN4-201ENST00000377575 ILDR1Q86SU0 546 aaPredicted RBP25.76■■□□□ 1.71
HMGN4-201ENST00000377575 UNC13BO14795 1591 aa25.73■■□□□ 1.71
HMGN4-201ENST00000377575 EFCAB6Q5THR3 1501 aa25.73■■□□□ 1.71
HMGN4-201ENST00000377575 RRBP1Q9P2E9 1410 aaKnown RBP25.72■■□□□ 1.71
HMGN4-201ENST00000377575 NCKAP5LQ9HCH0 1330 aa25.71■■□□□ 1.71
HMGN4-201ENST00000377575 UBR1Q8IWV7 1749 aa25.7■■□□□ 1.7
HMGN4-201ENST00000377575 TET3O43151 1660 aa25.68■■□□□ 1.7
HMGN4-201ENST00000377575 GCC2Q8IWJ2 1684 aa25.68■■□□□ 1.7
HMGN4-201ENST00000377575 THEMISQ8N1K5 641 aaPredicted RBP25.68■■□□□ 1.7
HMGN4-201ENST00000377575 FBXO41Q8TF61 875 aa25.68■■□□□ 1.7
HMGN4-201ENST00000377575 ITGAEP38570 1179 aa25.67■■□□□ 1.7
HMGN4-201ENST00000377575 NEURL4Q96JN8 1562 aa25.67■■□□□ 1.7
HMGN4-201ENST00000377575 CERKQ8TCT0 537 aa25.66■■□□□ 1.7
HMGN4-201ENST00000377575 RPRD2Q5VT52 1461 aaKnown RBP25.64■■□□□ 1.69
HMGN4-201ENST00000377575 KDM5AP29375 1690 aaKnown RBP25.63■■□□□ 1.69
HMGN4-201ENST00000377575 PIK3C2BO00750 1634 aa25.63■■□□□ 1.69
HMGN4-201ENST00000377575 IQGAP3Q86VI3 1631 aa25.63■■□□□ 1.69
HMGN4-201ENST00000377575 LTBP4Q8N2S1 1624 aa25.63■■□□□ 1.69
HMGN4-201ENST00000377575 SYNMO15061 1565 aa25.61■■□□□ 1.69
HMGN4-201ENST00000377575 ANKLE2Q86XL3 938 aa25.61■■□□□ 1.69
HMGN4-201ENST00000377575 IQGAP1P46940 1657 aa25.59■■□□□ 1.69
HMGN4-201ENST00000377575 NOS1P29475 1434 aa25.58■■□□□ 1.69
HMGN4-201ENST00000377575 MED14O60244 1454 aa25.58■■□□□ 1.69
HMGN4-201ENST00000377575 E9PCH4 1651 aa25.55■■□□□ 1.68
HMGN4-201ENST00000377575 IQSEC2Q5JU85 1478 aa25.55■■□□□ 1.68
HMGN4-201ENST00000377575 SLIT1O75093 1534 aa25.55■■□□□ 1.68
HMGN4-201ENST00000377575 NPHP4O75161 1426 aaPredicted RBP25.54■■□□□ 1.68
HMGN4-201ENST00000377575 ZNF335Q9H4Z2 1342 aaPredicted RBP25.53■■□□□ 1.68
HMGN4-201ENST00000377575 ARHGAP23Q9P227 1491 aa25.53■■□□□ 1.68
HMGN4-201ENST00000377575 ADGRB3O60242 1522 aa25.53■■□□□ 1.68
HMGN4-201ENST00000377575 SCAF11Q99590 1463 aaKnown RBP25.52■■□□□ 1.68
HMGN4-201ENST00000377575 NUP155O75694 1391 aa25.5■■□□□ 1.67
HMGN4-201ENST00000377575 STAG3Q9UJ98 1225 aa25.5■■□□□ 1.67
HMGN4-201ENST00000377575 SLC52A1Q9NWF4 448 aa25.48■■□□□ 1.67
HMGN4-201ENST00000377575 IDI1Q13907 227 aa25.47■■□□□ 1.67
HMGN4-201ENST00000377575 CPS1P31327 1500 aa25.47■■□□□ 1.67
HMGN4-201ENST00000377575 NAIPQ13075 1403 aa25.46■■□□□ 1.67
HMGN4-201ENST00000377575 TMEM2Q9UHN6 1383 aa25.45■■□□□ 1.67
HMGN4-201ENST00000377575 MYO5BQ9ULV0 1848 aa25.45■■□□□ 1.66
HMGN4-201ENST00000377575 EID1Q9Y6B2 187 aa25.44■■□□□ 1.66
HMGN4-201ENST00000377575 HFM1A2PYH4 1435 aa25.44■■□□□ 1.66
HMGN4-201ENST00000377575 SPHKAPQ2M3C7 1700 aa25.42■■□□□ 1.66
HMGN4-201ENST00000377575 TXNDC2Q86VQ3 553 aa25.41■■□□□ 1.66
HMGN4-201ENST00000377575 TMEM131LA2VDJ0 1609 aa25.41■■□□□ 1.66
HMGN4-201ENST00000377575 LTKP29376 864 aa25.39■■□□□ 1.66
HMGN4-201ENST00000377575 STRCP1A6NGW2 1772 aa25.36■■□□□ 1.65
HMGN4-201ENST00000377575 ZFYVE9O95405 1425 aa25.31■■□□□ 1.64
HMGN4-201ENST00000377575 RIMS2Q9UQ26 1411 aa25.29■■□□□ 1.64
HMGN4-201ENST00000377575 TRPM2O94759 1503 aa25.28■■□□□ 1.64
HMGN4-201ENST00000377575 CHGAP10645 457 aaKnown RBP25.27■■□□□ 1.64
HMGN4-201ENST00000377575 HDGFP51858 240 aaKnown RBP25.26■■□□□ 1.63
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms