RNA–Protein interactions for RNA: ENST00000367255.9

SYNE1-207, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene SYNE1, Length 27,748 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-207ENST00000367255 VPS8Q8N3P4 1428 aa4.67□□□□□ -1.66
SYNE1-207ENST00000367255 RGS3P49796 1198 aa4.67□□□□□ -1.66
SYNE1-207ENST00000367255 ZRSR1Q15695 479 aaKnown RBP4.67□□□□□ -1.66
SYNE1-207ENST00000367255 KIAA1211Q6ZU35 1233 aa4.67□□□□□ -1.66
SYNE1-207ENST00000367255 FMN1Q68DA7 1419 aa4.67□□□□□ -1.66
SYNE1-207ENST00000367255 RNF214Q8ND24 703 aa4.67□□□□□ -1.66
SYNE1-207ENST00000367255 GBP2P32456 591 aaPredicted RBP4.67□□□□□ -1.66
SYNE1-207ENST00000367255 NEUROD2Q15784 382 aa4.67□□□□□ -1.66
SYNE1-207ENST00000367255 RBM28Q9NW13 759 aaKnown RBP4.67□□□□□ -1.66
SYNE1-207ENST00000367255 ZHX1Q9UKY1 873 aaPredicted RBP4.66□□□□□ -1.66
SYNE1-207ENST00000367255 PLCB2Q00722 1185 aa4.66□□□□□ -1.66
SYNE1-207ENST00000367255 MCM2P49736 904 aa4.66□□□□□ -1.66
SYNE1-207ENST00000367255 PTMAP06454 111 aaKnown RBP4.66□□□□□ -1.66
SYNE1-207ENST00000367255 PLEKHH2Q8IVE3 1493 aa4.66□□□□□ -1.66
SYNE1-207ENST00000367255 TMED8Q6PL24 325 aaPredicted RBP4.66□□□□□ -1.66
SYNE1-207ENST00000367255 TICAM2Q86XR7 235 aa4.66□□□□□ -1.66
SYNE1-207ENST00000367255 MIA2Q96PC5 1412 aa4.66□□□□□ -1.66
SYNE1-207ENST00000367255 UBE2Q2Q8WVN8 375 aa4.66□□□□□ -1.66
SYNE1-207ENST00000367255 NEFHP12036 1026 aa4.66□□□□□ -1.66
SYNE1-207ENST00000367255 NUTM1Q86Y26 1132 aa4.66□□□□□ -1.66
SYNE1-207ENST00000367255 FBXO3Q9UK99 471 aa4.66□□□□□ -1.66
SYNE1-207ENST00000367255 PPP6R1Q9UPN7 881 aa4.66□□□□□ -1.66
SYNE1-207ENST00000367255 MCM3P25205 808 aa4.66□□□□□ -1.66
SYNE1-207ENST00000367255 CDR1P51861 262 aa4.66□□□□□ -1.66
SYNE1-207ENST00000367255 MCCP23508 829 aa4.65□□□□□ -1.66
SYNE1-207ENST00000367255 ITGB1BP2Q9UKP3 347 aa4.65□□□□□ -1.66
SYNE1-207ENST00000367255 TPM4P67936 248 aa4.65□□□□□ -1.66
SYNE1-207ENST00000367255 ZBED9Q6R2W3 1325 aa4.65□□□□□ -1.66
SYNE1-207ENST00000367255 PLIN1O60240 522 aa4.65□□□□□ -1.67
SYNE1-207ENST00000367255 SKAP1Q86WV1 359 aa4.65□□□□□ -1.67
SYNE1-207ENST00000367255 V9GYY5 206 aaPredicted RBP4.65□□□□□ -1.67
SYNE1-207ENST00000367255 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP4.65□□□□□ -1.67
SYNE1-207ENST00000367255 MNS1Q8NEH6 495 aa4.65□□□□□ -1.67
SYNE1-207ENST00000367255 MRE11P49959 708 aa4.65□□□□□ -1.67
SYNE1-207ENST00000367255 IPO9Q96P70 1041 aaKnown RBP4.64□□□□□ -1.67
SYNE1-207ENST00000367255 GRWD1Q9BQ67 446 aaKnown RBP eCLIP4.64□□□□□ -1.67
SYNE1-207ENST00000367255 TMX4Q9H1E5 349 aaPredicted RBP4.64□□□□□ -1.67
SYNE1-207ENST00000367255 RBM10P98175 930 aaKnown RBP4.64□□□□□ -1.67
SYNE1-207ENST00000367255 ZNF777Q9ULD5 760 aaPredicted RBP4.64□□□□□ -1.67
SYNE1-207ENST00000367255 CFAP53Q96M91 514 aa4.64□□□□□ -1.67
SYNE1-207ENST00000367255 BAZ1AQ9NRL2 1556 aaPredicted RBP4.64□□□□□ -1.67
SYNE1-207ENST00000367255 ARGLU1Q9NWB6 273 aaPredicted RBP4.64□□□□□ -1.67
SYNE1-207ENST00000367255 KIF20AO95235 890 aa4.64□□□□□ -1.67
SYNE1-207ENST00000367255 ERCC6Q03468 1493 aa4.64□□□□□ -1.67
SYNE1-207ENST00000367255 DNTTIP2Q5QJE6 756 aaKnown RBP4.64□□□□□ -1.67
SYNE1-207ENST00000367255 FAM43AQ8N2R8 423 aa4.64□□□□□ -1.67
SYNE1-207ENST00000367255 FAM13BQ9NYF5 915 aa4.64□□□□□ -1.67
SYNE1-207ENST00000367255 EPB41L2O43491 1005 aaKnown RBP4.64□□□□□ -1.67
SYNE1-207ENST00000367255 PAK3O75914 559 aaPredicted RBP4.64□□□□□ -1.67
SYNE1-207ENST00000367255 UACAQ9BZF9 1416 aa4.64□□□□□ -1.67
SYNE1-207ENST00000367255 CCDC70Q6NSX1 233 aa4.63□□□□□ -1.67
SYNE1-207ENST00000367255 BRPF3Q9ULD4 1205 aa4.63□□□□□ -1.67
SYNE1-207ENST00000367255 PPP1R1BQ9UD71 204 aaPredicted RBP4.63□□□□□ -1.67
SYNE1-207ENST00000367255 PRPF40AO75400 957 aaKnown RBP4.63□□□□□ -1.67
SYNE1-207ENST00000367255 HSPA5P11021 654 aaKnown RBP4.63□□□□□ -1.67
SYNE1-207ENST00000367255 SRPK2P78362 688 aaKnown RBP4.63□□□□□ -1.67
SYNE1-207ENST00000367255 TUBB2AQ13885 445 aa4.63□□□□□ -1.67
SYNE1-207ENST00000367255 TUBB2BQ9BVA1 445 aa4.63□□□□□ -1.67
SYNE1-207ENST00000367255 VGFO15240 615 aaPredicted RBP4.63□□□□□ -1.67
SYNE1-207ENST00000367255 ERCC4Q92889 916 aaPredicted RBP4.63□□□□□ -1.67
SYNE1-207ENST00000367255 IQSEC3Q9UPP2 1182 aaPredicted RBP4.63□□□□□ -1.67
SYNE1-207ENST00000367255 ANKRD30BQ9BXX2 1392 aa4.63□□□□□ -1.67
SYNE1-207ENST00000367255 ZMYM4Q5VZL5 1548 aa4.63□□□□□ -1.67
SYNE1-207ENST00000367255 NEMFO60524 1076 aa4.63□□□□□ -1.67
SYNE1-207ENST00000367255 RGL3Q3MIN7 710 aa4.63□□□□□ -1.67
SYNE1-207ENST00000367255 FOXD4L6Q3SYB3 417 aaPredicted RBP4.63□□□□□ -1.67
SYNE1-207ENST00000367255 FOXD4L3Q6VB84 417 aaPredicted RBP4.63□□□□□ -1.67
SYNE1-207ENST00000367255 PLEKHH1Q9ULM0 1364 aa4.63□□□□□ -1.67
SYNE1-207ENST00000367255 SETSIPP0DME0 302 aa4.62□□□□□ -1.67
SYNE1-207ENST00000367255 DNAAF4Q8WXU2 420 aa4.62□□□□□ -1.67
SYNE1-207ENST00000367255 GTF3C5Q9Y5Q8 519 aaPredicted RBP4.62□□□□□ -1.67
SYNE1-207ENST00000367255 GOLGA6L7A0A1B0GV03 622 aa4.62□□□□□ -1.67
SYNE1-207ENST00000367255 MBD3O95983 291 aa4.62□□□□□ -1.67
SYNE1-207ENST00000367255 MSH5O43196 834 aa4.62□□□□□ -1.67
SYNE1-207ENST00000367255 OS9Q13438 667 aaPredicted RBP4.62□□□□□ -1.67
SYNE1-207ENST00000367255 DDX11Q96FC9 970 aa4.62□□□□□ -1.67
SYNE1-207ENST00000367255 PODNQ7Z5L7 613 aa4.62□□□□□ -1.67
SYNE1-207ENST00000367255 IQCEQ6IPM2 695 aa4.62□□□□□ -1.67
SYNE1-207ENST00000367255 MYO6Q9UM54 1294 aa4.62□□□□□ -1.67
SYNE1-207ENST00000367255 USH1CQ9Y6N9 552 aa4.62□□□□□ -1.67
SYNE1-207ENST00000367255 CENPHQ9H3R5 247 aa4.62□□□□□ -1.67
SYNE1-207ENST00000367255 CENPJQ9HC77 1338 aaPredicted RBP4.62□□□□□ -1.67
SYNE1-207ENST00000367255 KNSTRNQ9Y448 316 aa4.62□□□□□ -1.67
SYNE1-207ENST00000367255 CHGAP10645 457 aaKnown RBP4.62□□□□□ -1.67
SYNE1-207ENST00000367255 FEZ1Q99689 392 aa4.62□□□□□ -1.67
SYNE1-207ENST00000367255 UTP14AQ9BVJ6 771 aaKnown RBP4.62□□□□□ -1.67
SYNE1-207ENST00000367255 MAP3K1Q13233 1512 aa4.62□□□□□ -1.67
SYNE1-207ENST00000367255 RPAINQ86UA6 219 aa4.62□□□□□ -1.67
SYNE1-207ENST00000367255 CANXP27824 592 aaKnown RBP4.61□□□□□ -1.67
SYNE1-207ENST00000367255 NLRP13Q86W25 1043 aa4.61□□□□□ -1.67
SYNE1-207ENST00000367255 CHMP3Q9Y3E7 222 aa4.61□□□□□ -1.67
SYNE1-207ENST00000367255 LMOD3Q0VAK6 560 aa4.61□□□□□ -1.67
SYNE1-207ENST00000367255 CWC22Q9HCG8 908 aaKnown RBP4.61□□□□□ -1.67
SYNE1-207ENST00000367255 LRRFIP1Q32MZ4 808 aaKnown RBP4.61□□□□□ -1.67
SYNE1-207ENST00000367255 RWDD1Q9H446 243 aaPredicted RBP4.61□□□□□ -1.67
SYNE1-207ENST00000367255 TMC1Q8TDI8 760 aa4.61□□□□□ -1.67
SYNE1-207ENST00000367255 PDE6BP35913 854 aa4.61□□□□□ -1.67
SYNE1-207ENST00000367255 RRBP1Q9P2E9 1410 aaKnown RBP4.61□□□□□ -1.67
SYNE1-207ENST00000367255 RB1CC1Q8TDY2 1594 aa4.61□□□□□ -1.67
SYNE1-207ENST00000367255 CGNQ9P2M7 1197 aaKnown RBP4.61□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms