RNA–Protein interactions for RNA: ENST00000360046.9

HOXA4-201, Transcript of homeobox A4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXA4, Length 1,747 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA4-201ENST00000360046 MPHOSPH9Q99550 1183 aa32.14■■■□□ 2.74
HOXA4-201ENST00000360046 PZPP20742 1482 aa32.13■■■□□ 2.73
HOXA4-201ENST00000360046 GRWD1Q9BQ67 446 aaKnown RBP eCLIP32.13■■■□□ 2.73
HOXA4-201ENST00000360046 ARHGEF40Q8TER5 1519 aa32.12■■■□□ 2.73
HOXA4-201ENST00000360046 SLC4A1APQ9BWU0 796 aaKnown RBP32.12■■■□□ 2.73
HOXA4-201ENST00000360046 DEPDC5O75140 1603 aa32.11■■■□□ 2.73
HOXA4-201ENST00000360046 CLSPNQ9HAW4 1339 aa32.1■■■□□ 2.73
HOXA4-201ENST00000360046 FAM135AQ9P2D6 1515 aa32.07■■■□□ 2.72
HOXA4-201ENST00000360046 IQGAP3Q86VI3 1631 aa32.06■■■□□ 2.72
HOXA4-201ENST00000360046 BCORL1Q5H9F3 1711 aa32.06■■■□□ 2.72
HOXA4-201ENST00000360046 RNF17Q9BXT8 1623 aaKnown RBP32.04■■■□□ 2.72
HOXA4-201ENST00000360046 REREQ9P2R6 1566 aa32.03■■■□□ 2.72
HOXA4-201ENST00000360046 GGT6Q6P531 493 aa32.03■■■□□ 2.72
HOXA4-201ENST00000360046 MROH1Q8NDA8 1641 aa32.02■■■□□ 2.72
HOXA4-201ENST00000360046 PRDM15P57071 1507 aaPredicted RBP32.02■■■□□ 2.72
HOXA4-201ENST00000360046 ZEB1P37275 1124 aaPredicted RBP32.01■■■□□ 2.72
HOXA4-201ENST00000360046 KANK1Q14678 1352 aa32.01■■■□□ 2.71
HOXA4-201ENST00000360046 FOXD1Q16676 465 aa31.98■■■□□ 2.71
HOXA4-201ENST00000360046 ARID4BQ4LE39 1312 aaPredicted RBP31.98■■■□□ 2.71
HOXA4-201ENST00000360046 PKD2Q13563 968 aa31.97■■■□□ 2.71
HOXA4-201ENST00000360046 VWDEQ8N2E2 1590 aa31.95■■■□□ 2.7
HOXA4-201ENST00000360046 SIGLEC1Q9BZZ2 1709 aa31.93■■■□□ 2.7
HOXA4-201ENST00000360046 AGLP35573 1532 aa31.93■■■□□ 2.7
HOXA4-201ENST00000360046 MLECQ14165 292 aa31.92■■■□□ 2.7
HOXA4-201ENST00000360046 CEP152O94986 1710 aa31.89■■■□□ 2.7
HOXA4-201ENST00000360046 TET3O43151 1660 aa31.89■■■□□ 2.7
HOXA4-201ENST00000360046 SIN3AQ96ST3 1273 aa31.88■■■□□ 2.69
HOXA4-201ENST00000360046 NEUROD1Q13562 356 aa31.86■■■□□ 2.69
HOXA4-201ENST00000360046 WASHC2CQ9Y4E1 1318 aa31.86■■■□□ 2.69
HOXA4-201ENST00000360046 ANKRD30BQ9BXX2 1392 aa31.85■■■□□ 2.69
HOXA4-201ENST00000360046 E9PCH4 1651 aa31.83■■■□□ 2.69
HOXA4-201ENST00000360046 LMTK2Q8IWU2 1503 aa31.83■■■□□ 2.69
HOXA4-201ENST00000360046 ABCC3O15438 1527 aa31.82■■■□□ 2.68
HOXA4-201ENST00000360046 ZC3H13Q5T200 1668 aaKnown RBP31.81■■■□□ 2.68
HOXA4-201ENST00000360046 EFCAB6Q5THR3 1501 aa31.8■■■□□ 2.68
HOXA4-201ENST00000360046 CAMSAP1Q5T5Y3 1602 aa31.76■■■□□ 2.67
HOXA4-201ENST00000360046 ESF1Q9H501 851 aaKnown RBP31.75■■■□□ 2.67
HOXA4-201ENST00000360046 PPP6R1Q9UPN7 881 aa31.75■■■□□ 2.67
HOXA4-201ENST00000360046 SPHKAPQ2M3C7 1700 aa31.71■■■□□ 2.67
HOXA4-201ENST00000360046 RPRD2Q5VT52 1461 aaKnown RBP31.7■■■□□ 2.66
HOXA4-201ENST00000360046 CLTCQ00610 1675 aaKnown RBP31.69■■■□□ 2.66
HOXA4-201ENST00000360046 PLA2R1Q13018 1463 aa31.68■■■□□ 2.66
HOXA4-201ENST00000360046 TONSLQ96HA7 1378 aa31.68■■■□□ 2.66
HOXA4-201ENST00000360046 NPATQ14207 1427 aa31.66■■■□□ 2.66
HOXA4-201ENST00000360046 CCDC144AA2RUR9 1427 aa31.66■■■□□ 2.66
HOXA4-201ENST00000360046 CFAP65Q6ZU64 1925 aaKnown RBP31.64■■■□□ 2.66
HOXA4-201ENST00000360046 TRPM2O94759 1503 aa31.64■■■□□ 2.66
HOXA4-201ENST00000360046 PTPRTO14522 1441 aa31.62■■■□□ 2.65
HOXA4-201ENST00000360046 TIMELESSQ9UNS1 1208 aa31.62■■■□□ 2.65
HOXA4-201ENST00000360046 ARHGAP31Q2M1Z3 1444 aa31.61■■■□□ 2.65
HOXA4-201ENST00000360046 CNTLNQ9NXG0 1405 aa31.55■■■□□ 2.64
HOXA4-201ENST00000360046 CLTCL1P53675 1640 aa31.55■■■□□ 2.64
HOXA4-201ENST00000360046 ZMYM3Q14202 1370 aa31.55■■■□□ 2.64
HOXA4-201ENST00000360046 FER1L4A9Z1Z3 1794 aa31.53■■■□□ 2.64
HOXA4-201ENST00000360046 PREX1Q8TCU6 1659 aa31.53■■■□□ 2.64
HOXA4-201ENST00000360046 FBXO31Q5XUX0 539 aaPredicted RBP31.52■■■□□ 2.64
HOXA4-201ENST00000360046 UGGT1Q9NYU2 1555 aa31.51■■■□□ 2.63
HOXA4-201ENST00000360046 PLPPR3Q6T4P5 718 aa31.5■■■□□ 2.63
HOXA4-201ENST00000360046 NOS1P29475 1434 aa31.49■■■□□ 2.63
HOXA4-201ENST00000360046 MROH2AA6NES4 1674 aa31.49■■■□□ 2.63
HOXA4-201ENST00000360046 L3MBTL2Q969R5 705 aa31.48■■■□□ 2.63
HOXA4-201ENST00000360046 SYNMO15061 1565 aa31.47■■■□□ 2.63
HOXA4-201ENST00000360046 MADDQ8WXG6 1647 aa31.47■■■□□ 2.63
HOXA4-201ENST00000360046 CEBPAP49715 358 aaPredicted RBP31.46■■■□□ 2.63
HOXA4-201ENST00000360046 ERVK-7P63135 1459 aa31.45■■■□□ 2.63
HOXA4-201ENST00000360046 ADAMTSL3P82987 1691 aa31.44■■■□□ 2.62
HOXA4-201ENST00000360046 KIF1BO60333 1816 aa31.44■■■□□ 2.62
HOXA4-201ENST00000360046 PPP1R15AO75807 674 aaPredicted RBP31.43■■■□□ 2.62
HOXA4-201ENST00000360046 RIMS1Q86UR5 1692 aaKnown RBP31.42■■■□□ 2.62
HOXA4-201ENST00000360046 RGL3Q3MIN7 710 aa31.41■■■□□ 2.62
HOXA4-201ENST00000360046 PIK3C2BO00750 1634 aa31.4■■■□□ 2.62
HOXA4-201ENST00000360046 SPATA31D1Q6ZQQ2 1576 aa31.4■■■□□ 2.62
HOXA4-201ENST00000360046 SPATA31E1Q6ZUB1 1445 aa31.39■■■□□ 2.62
HOXA4-201ENST00000360046 C3P01024 1663 aa31.37■■■□□ 2.61
HOXA4-201ENST00000360046 CHGAP10645 457 aaKnown RBP31.35■■■□□ 2.61
HOXA4-201ENST00000360046 SLC52A1Q9NWF4 448 aa31.34■■■□□ 2.61
HOXA4-201ENST00000360046 KDM4FA0A1W2PPD8 638 aa31.32■■■□□ 2.61
HOXA4-201ENST00000360046 IDI1Q13907 227 aa31.32■■■□□ 2.61
HOXA4-201ENST00000360046 DCAF11Q8TEB1 546 aa31.32■■■□□ 2.61
HOXA4-201ENST00000360046 NEURL4Q96JN8 1562 aa31.32■■■□□ 2.6
HOXA4-201ENST00000360046 ADGRB3O60242 1522 aa31.31■■■□□ 2.6
HOXA4-201ENST00000360046 TNRQ92752 1358 aa31.3■■■□□ 2.6
HOXA4-201ENST00000360046 KDM2AQ9Y2K7 1162 aa31.29■■■□□ 2.6
HOXA4-201ENST00000360046 ZNF326Q5BKZ1 582 aaKnown RBP31.27■■■□□ 2.6
HOXA4-201ENST00000360046 AEBP2Q6ZN18 517 aaPredicted RBP31.27■■■□□ 2.6
HOXA4-201ENST00000360046 STAG3Q9UJ98 1225 aa31.25■■■□□ 2.59
HOXA4-201ENST00000360046 PTPRMP28827 1452 aa31.23■■■□□ 2.59
HOXA4-201ENST00000360046 MYO5BQ9ULV0 1848 aa31.23■■■□□ 2.59
HOXA4-201ENST00000360046 TMEM131LA2VDJ0 1609 aa31.22■■■□□ 2.59
HOXA4-201ENST00000360046 NBPF8Q3BBV2 869 aa31.21■■■□□ 2.59
HOXA4-201ENST00000360046 UHRF1BP1Q6BDS2 1440 aa31.19■■■□□ 2.58
HOXA4-201ENST00000360046 IFT172Q9UG01 1749 aa31.19■■■□□ 2.58
HOXA4-201ENST00000360046 PPLO60437 1756 aa31.16■■■□□ 2.58
HOXA4-201ENST00000360046 PRAG1Q86YV5 1406 aa31.16■■■□□ 2.58
HOXA4-201ENST00000360046 NLRP1Q9C000 1473 aa31.13■■■□□ 2.57
HOXA4-201ENST00000360046 STAC3Q96MF2 364 aa31.12■■■□□ 2.57
HOXA4-201ENST00000360046 MYOM2P54296 1465 aa31.12■■■□□ 2.57
HOXA4-201ENST00000360046 RPGRIP1LQ68CZ1 1315 aa31.12■■■□□ 2.57
HOXA4-201ENST00000360046 A2ML1A8K2U0 1454 aa31.1■■■□□ 2.57
HOXA4-201ENST00000360046 NEXMIFQ5QGS0 1516 aa31.1■■■□□ 2.57
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms